Shsu017285.1
Basic Information
- Insect
- Scaptomyza hsui
- Gene Symbol
- -
- Assembly
- GCA_018152825.1
- Location
- JAECXO010000044.1:966261-970529[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.094 7.8 7.3 5.3 2 23 343 365 342 365 0.96 2 16 0.0039 0.33 11.7 1.3 2 23 408 429 408 429 0.93 3 16 5.2 4.3e+02 1.8 3.0 2 17 440 455 439 466 0.75 4 16 0.2 17 6.3 1.0 3 23 499 519 497 519 0.91 5 16 0.0014 0.12 13.1 0.2 1 23 527 550 527 550 0.97 6 16 1.4e-05 0.0012 19.3 0.2 2 23 555 576 554 576 0.97 7 16 0.00016 0.013 16.0 0.4 1 22 624 645 624 648 0.90 8 16 0.23 19 6.1 1.3 3 21 655 673 655 674 0.90 9 16 0.0011 0.087 13.5 0.4 1 23 693 718 693 718 0.97 10 16 0.02 1.6 9.5 0.7 2 23 734 756 733 756 0.93 11 16 0.0019 0.15 12.7 0.5 2 23 762 784 761 784 0.92 12 16 0.0021 0.17 12.5 0.2 2 23 788 810 787 810 0.96 13 16 2.7e-05 0.0022 18.5 2.3 1 23 816 838 816 838 0.98 14 16 0.0039 0.32 11.7 0.9 1 23 842 865 842 865 0.96 15 16 9.1e-06 0.00076 19.9 1.3 1 23 871 894 871 894 0.97 16 16 0.0054 0.45 11.2 0.2 1 23 898 926 898 926 0.89
Sequence Information
- Coding Sequence
- ATGTCGAAAAGCGTGAAAAAATCAAAAAATGTACCTAGCTGCCTGCATTGCAGCGCGTACAGTTCAAAACTACAATATCAAGAGATATTCGATAAAGTGGGCATTGAAATAGGTCTTGACAAACTGGTAGCTAAGTATTTTGAAATAATTGCAAAACCAAACGCTGAAAAGCCGCAGCTGCTATGCAAGGAGTGTGTGACTACGCTTATACGTTTTTATGATATCGACGAACTTCAAAAAAAGCAAGATGCTTTCAACGCTTCCAAAAAAAAGAATGCAAAGAATGTAAAACCACAGTCGCCTGCGTCCGCAGATGCCACCAATAACGATGGAACAATTCCCGCTAAACAGCAGACATGTGTTGCAAAGAGTCCAAAAATTTCCACAAATGTCTCGGAATCATCACCGACAAATCAGCAAAAGCCAACGTCGGTTTCTGATGGAGCTGTTGTCGTTCCTCCGGGTGGTGTAGCAAAACCCTCGCCAGAAGCAGCCAATACTAGTATCATCAGTGCGAAAAACGCTCCGCCAAAAAGATTGCCCACCAAACTGAAGGCAGCAGTAAAGGCAAGTGAAACGCCTACTGTTAAAACAGAAGCTAAACGGCAACGTTCCAAAGAAGCGGCTAAGGTTGATCAGGAGCAGATAAGCGATCTAATTCGCGACATTCTAGACGATGAGTCGCCAGCAGACGAAAAATTGGCGGAAGAGGAGCAGCAGCCGAAGGAGGCGGAAGCGCAACGTGTGCAAGTGGAGGAAGAGGAGGATAATAATGAGCTGGAATATCTGGTTGAGCGCGAAGATAATTCCTCAGAATTGGGTGTGCGGCATTTTAAACTGGAGCAAAAGATGAATCGCACCACGTCGCAGTCGCAAAACGAAAGCCAAAGCGAGGAAGAGTGCTTTAAAGTGGAACCATTCAACTTCGTGCTTATCAAGGAAACTGATAATATTAACGATTTGTACGAGTATTTGGCCACTGTGGTGAAGACTTGCTTTGAGACCTTGACATTCGACTGGGACACTGAGTGCCGACATTGCTCGTTGAAGTGCAGCACATATGAAAGTCTATTGAGTCACATGCTGAAACGGCATGAGCTGCCGGACAAGGTATACAAGTGCCCCATCGATGACTGCAATTCAGAGCTGCAAGGAGGCAAATCTTTGGCCATGCATTTGGTTGTGCTGCATGCACCAGTTGCTGATATACACATTTATGGCAGCTGTCCCGAATGCGGCATGACCTTCTCAAACATACTGCAGTACAACAAACACTCCTGCGCGCATGTCATTAAAAAACGTCGTGGCATACGCCTATATTGTGAGATGTGCGGCTTGGAGTTTCCCTCCTGGAAGCGCTTTAATTTTCACAATCAATTTCATTTGGAACGCCACAGACCGCGCGCCTGCTTTGTGTGCAGCTATGCCGATAATAATATCGATGAGCTATTCCATCATTTGCACTACGCCCACGAGCCGGAGGGCACGCTCTTTTGTGATCTCTGTGATCGCAACTTTCGCGATAATACCATCTTTATGGAGCACAACAAATCGCACTCCAATGTCAGCAGCACTACTTACAGCTGCACCGAATGCAGCGCCAATTTTGAGACGCGCGGTCGCCTCAATGGTCATATGCGTGCCGCACATGGAAGCGTCATTAGCTGCGAGCTGTGTGGCCGTGAATTTTCCTCGGAGGCCACCTACAATGTACACATGAAAACGCATCTGATTATTGAACGCGAGGTGAATGTGTGCAACAATTGTGGTTTGCTCAGCGAGAACCACTCAAAGATGGTGTCTCATGTATCGGATGATGATTCAGTTTGCCTTGGCAGTGATGTTTTAGTGGAGCTGATGCGCGATGTTTATGTGTGTGAATTTTGCAACGCCTACTTTAGGCAGAAGAGTGATTTGCGTGCTCATCGCGATTCAGGGGTTCATAAGGATGGCCTCTTCTGGTGTCAGCCGTGCAGCAAGGATTTTTCCGACATGAAACTCTATCGGCACCATATGCGCAACTATCAGCAAATGCGAACAGATACTGCGCATCGCAGTCTTGAAATTTGTCTTTACTACATGTGCGACATTCAGGATTGCGAAGAGGCGTATACCAATTGGAATTCACTGTACACTCACAAACGGCGCACACACGATGCCGTCGAGAAGCTGGATCCTAAGACAAAGGAAAATGAATGGATCTGTCAGTTTTGCCAGAAAGTGTGCCCCTCCAAAATGTCGCTCTCAGTTCACGTGGCACGCAGTCACAACAACAATAATTTGGTTTGCCCGCTGTGCAAAGCCTCCTATAAAAATGAGGAGGCGCTTAAAAAACATCACGATTATTGGCACGAGCAAATGGAGTGTCCGCTGTGCTTAAAGGTTGTCAAGAATCGTCGCAACTTTGACACTCACATGAACGTGGTGCACTCAAACAATAAACGTTACTCGTGCAATGTGTGCCAGAAAGGATTCTACCACAAGAGCGAAATGGAGGCACATCGGCGGCTACATACCGAATCGTTTAAATGTGACCAATGCAGTTTCACTACGAGGAACGAGAAATCGCTGTCGGTTCATATAATGGGACAGCACTTTAAGCGGTTTGCTTTCGAGTGCAAGCAGTGCGATAAGCGGTTCGGACGTCGCCAGGGACTTTCAAATCATATGCAGCGTGTACACAACTCCAAATATACTTGTCGAGACCTCTTTGATGGGGGCTGCAGCAAAGCTTTTGCATCAACATCCCGGCTCAATGTGCATGTGCGTAAGGCGCATAACAGCAGCGTTTTCCTGACCGAGGATCAAGTCAAGTCGGAGAGGGGTGATGAGTCGGTCGAGGAGTTAACAAGTGATGGTCCATCGACATCAAGAAAACGCCGTATACGCATCAATACAAACACTAAAATTGAGTTCATTGGCAATGCAGTTGATGGCGAGGACAACGAGGATAACGAGAGCCAGGCGAGCTCAGCGATTTCCGAGGAGTATCGGAAGATCAAGAACGTGAAAAAGGAACCACCAAAAAAGAAACAGAAGCAAAGTCTATATAATTGA
- Protein Sequence
- MSKSVKKSKNVPSCLHCSAYSSKLQYQEIFDKVGIEIGLDKLVAKYFEIIAKPNAEKPQLLCKECVTTLIRFYDIDELQKKQDAFNASKKKNAKNVKPQSPASADATNNDGTIPAKQQTCVAKSPKISTNVSESSPTNQQKPTSVSDGAVVVPPGGVAKPSPEAANTSIISAKNAPPKRLPTKLKAAVKASETPTVKTEAKRQRSKEAAKVDQEQISDLIRDILDDESPADEKLAEEEQQPKEAEAQRVQVEEEEDNNELEYLVEREDNSSELGVRHFKLEQKMNRTTSQSQNESQSEEECFKVEPFNFVLIKETDNINDLYEYLATVVKTCFETLTFDWDTECRHCSLKCSTYESLLSHMLKRHELPDKVYKCPIDDCNSELQGGKSLAMHLVVLHAPVADIHIYGSCPECGMTFSNILQYNKHSCAHVIKKRRGIRLYCEMCGLEFPSWKRFNFHNQFHLERHRPRACFVCSYADNNIDELFHHLHYAHEPEGTLFCDLCDRNFRDNTIFMEHNKSHSNVSSTTYSCTECSANFETRGRLNGHMRAAHGSVISCELCGREFSSEATYNVHMKTHLIIEREVNVCNNCGLLSENHSKMVSHVSDDDSVCLGSDVLVELMRDVYVCEFCNAYFRQKSDLRAHRDSGVHKDGLFWCQPCSKDFSDMKLYRHHMRNYQQMRTDTAHRSLEICLYYMCDIQDCEEAYTNWNSLYTHKRRTHDAVEKLDPKTKENEWICQFCQKVCPSKMSLSVHVARSHNNNNLVCPLCKASYKNEEALKKHHDYWHEQMECPLCLKVVKNRRNFDTHMNVVHSNNKRYSCNVCQKGFYHKSEMEAHRRLHTESFKCDQCSFTTRNEKSLSVHIMGQHFKRFAFECKQCDKRFGRRQGLSNHMQRVHNSKYTCRDLFDGGCSKAFASTSRLNVHVRKAHNSSVFLTEDQVKSERGDESVEELTSDGPSTSRKRRIRINTNTKIEFIGNAVDGEDNEDNESQASSAISEEYRKIKNVKKEPPKKKQKQSLYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -