Basic Information

Insect: Scaptomyza hsui
Gene Symbol: -
Assembly: GCA_018152825.1
Location: JAECXO010000307.1:8909296-8913287[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.7e-05 0.0039 17.7 1.6 1 23 212 234 212 234 0.93

2 8 1.2e-08 9.7e-07 29.0 2.6 1 23 240 262 240 262 0.98

3 8 4.8e-06 0.0004 20.8 0.8 1 23 268 290 268 290 0.98

4 8 3.5e-06 0.00029 21.3 1.0 1 23 296 318 296 318 0.97

5 8 1.7e-05 0.0014 19.1 1.4 2 23 410 431 409 431 0.96

6 8 1.8e-09 1.5e-07 31.6 1.6 1 23 437 459 437 459 0.98

7 8 0.0022 0.18 12.4 0.9 3 23 467 487 465 487 0.97

8 8 3.9e-05 0.0032 18.0 1.5 1 23 493 515 493 515 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.7e-05	0.0039	17.7	1.6	1	23	212	234	212	234	0.93
2	8	1.2e-08	9.7e-07	29.0	2.6	1	23	240	262	240	262	0.98
3	8	4.8e-06	0.0004	20.8	0.8	1	23	268	290	268	290	0.98
4	8	3.5e-06	0.00029	21.3	1.0	1	23	296	318	296	318	0.97
5	8	1.7e-05	0.0014	19.1	1.4	2	23	410	431	409	431	0.96
6	8	1.8e-09	1.5e-07	31.6	1.6	1	23	437	459	437	459	0.98
7	8	0.0022	0.18	12.4	0.9	3	23	467	487	465	487	0.97
8	8	3.9e-05	0.0032	18.0	1.5	1	23	493	515	493	515	0.99

Sequence Information

Coding Sequence: ATGGCCATCAACTTTTCGGCCTCCTTTGCGGCCTGCATAGCGGCAGGTCTGAAGGTTCCCCGCCAGATCATGTACTGCATCACGCAGGACACCGGCCAGCCCTATCTTGCCAATCAAAGCGCGCCAAATCCAAACCAAAGCAGCAACGCCGAGCAGCATGCCACAGCCAATGGCGGCGAGGCGGGGCACGTGCAACAGAACGGCAGCCAGCCACAGGGTGATCCGAGGAACGGCTTCCAAACGCCCGACTACTATGCGCCGCGTCATGCGGCAGGACCCCAAGGCGGTGGCATGCTGGCGCCACCTGGCTTCCCGCCGCTGCACTATCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCGCACGGGACCCGGACGCCCGCAGAAGAACAAGCCGCACAGCGATCTGAGGCTGTTCAAGTGCCTCACCTGCGGCAAGGACTTCAAGCAGAAGAGCACGTTGCTGCAACACGATCGGATACACACGGATGCGCGTCCCTTTCCGTGCTCCGAGTGCGGCAAGCGCTTCCGGCAGCAGTCGCATCTGACGCAACATCTGCGCATCCATGCCAACGAAAAGCCCTTCACGTGTCCTTACTGCTCGCGCAGTTTCCGGCAGCGCGCGATCCTCAATCAGCACATACGCATCCATTCGGGTGAGAAGCCCTTCGCCTGCCCCGAGTGCGGCAAGCACTTTCGCCAGAAGGCCATCCTCAATCAGCATGTGCGCACCCACCAAGATGTCTCACCGCATCTCATATTCAAGAACGGACCGCATCCGACGCTCTGGCCCTCGGACGTGCCCTTTCCGGGCGAGGAGACGGACACGAAGGGCGACATTGCTGCCGCCGGCGGTGGCTACCACGACGATGACTCACAGGGCACACCCGATGGCAGCGGTGGCATGCACTATCCCTCCTACTTCAAGGATGTCAAGGCAGGTCAAAAGATACTGCCGGAGGTGCTGCAACATATTGGGGTGCGGCCAGCGAACATGCCACTCTATGTGCGCTGCCCCATCTGCGACAAGGAGTTCAAGCAGAAGACCACACTCTTGCAGCACGGTTGCATACACATCGAGTCGCGCCCGTATCCGTGCCCCGAGTGCGGCAAACGTTTCCGCCAGCAATCGCATCTGACGCAACATCTGCGCATCCATACGAACGAGAAACCCTTCGGTTGCATGTACTGTCCACGCTTCTTCCGCCAGCGCACCATTCTCAATCAGCACTTGCGCATTCACACGGGTGAGAAACCTTACAAGTGCACCCAATGTGGCAAGGACTTTAGACAGAAGGCAATCCTGGATCAGCATACGCGCACTCACCAGGGCGATCCGCCGCCCACAACGACACACGGTGCCCCAACGGTGGCGGCGCCACAGACGGTGACGTTATCGATAACATTGCCACCGCCGCCGCCATCGGCGCATCCGCCGCATCCGCATGCGGGTCATGCACTGGCGGCCACGCCCAATGGCGTTGCGCCACCGCCGCCCCCGCCGACACTGTCGCATGCGATACCCATACACCCACACATACACTCGATATTCGGATCTCTATGA
Protein Sequence: MAINFSASFAACIAAGLKVPRQIMYCITQDTGQPYLANQSAPNPNQSSNAEQHATANGGEAGHVQQNGSQPQGDPRNGFQTPDYYAPRHAAGPQGGGMLAPPGFPPLHYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRTGPGRPQKNKPHSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPFPCSECGKRFRQQSHLTQHLRIHANEKPFTCPYCSRSFRQRAILNQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGPHPTLWPSDVPFPGEETDTKGDIAAAGGGYHDDDSQGTPDGSGGMHYPSYFKDVKAGQKILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQGDPPPTTTHGAPTVAAPQTVTLSITLPPPPPSAHPPHPHAGHALAATPNGVAPPPPPPTLSHAIPIHPHIHSIFGSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -