Basic Information

Insect: Scaptomyza hsui
Gene Symbol: -
Assembly: GCA_018152825.1
Location: JAECXO010000269.1:7304876-7316635[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.5e-05 0.0021 18.6 2.1 1 23 115 137 115 137 0.97

2 18 8.2e-06 0.00068 20.1 0.4 1 23 143 165 143 165 0.97

3 18 0.0012 0.1 13.3 0.9 1 23 171 193 171 193 0.95

4 18 1.7e-05 0.0014 19.1 3.1 1 23 199 221 199 221 0.97

5 18 3.9e-05 0.0033 17.9 4.7 1 23 227 249 227 249 0.99

6 18 7.2e-05 0.006 17.1 5.7 1 23 255 277 255 277 0.97

7 18 3.5e-07 2.9e-05 24.4 4.3 1 23 283 305 283 305 0.98

8 18 1.3e-07 1e-05 25.8 2.4 1 23 311 333 311 333 0.97

9 18 7.4e-05 0.0061 17.1 6.7 1 23 340 362 340 362 0.97

10 18 0.00013 0.011 16.3 6.5 1 23 368 390 368 390 0.98

11 18 1.1e-05 0.00095 19.6 4.5 1 23 396 418 396 418 0.98

12 18 8.3e-06 0.00069 20.1 8.1 1 23 424 446 424 446 0.98

13 18 6.8e-06 0.00056 20.4 7.6 1 23 452 474 452 474 0.97

14 18 7.6e-07 6.3e-05 23.4 7.7 1 23 480 502 480 502 0.98

15 18 0.00024 0.02 15.5 9.5 1 23 508 531 508 531 0.95

16 18 8.4e-05 0.0069 16.9 0.9 1 23 537 559 537 559 0.98

17 18 0.00092 0.076 13.6 3.4 1 23 569 591 569 591 0.97

18 18 1e-05 0.00086 19.8 1.6 1 23 597 620 597 620 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.5e-05	0.0021	18.6	2.1	1	23	115	137	115	137	0.97
2	18	8.2e-06	0.00068	20.1	0.4	1	23	143	165	143	165	0.97
3	18	0.0012	0.1	13.3	0.9	1	23	171	193	171	193	0.95
4	18	1.7e-05	0.0014	19.1	3.1	1	23	199	221	199	221	0.97
5	18	3.9e-05	0.0033	17.9	4.7	1	23	227	249	227	249	0.99
6	18	7.2e-05	0.006	17.1	5.7	1	23	255	277	255	277	0.97
7	18	3.5e-07	2.9e-05	24.4	4.3	1	23	283	305	283	305	0.98
8	18	1.3e-07	1e-05	25.8	2.4	1	23	311	333	311	333	0.97
9	18	7.4e-05	0.0061	17.1	6.7	1	23	340	362	340	362	0.97
10	18	0.00013	0.011	16.3	6.5	1	23	368	390	368	390	0.98
11	18	1.1e-05	0.00095	19.6	4.5	1	23	396	418	396	418	0.98
12	18	8.3e-06	0.00069	20.1	8.1	1	23	424	446	424	446	0.98
13	18	6.8e-06	0.00056	20.4	7.6	1	23	452	474	452	474	0.97
14	18	7.6e-07	6.3e-05	23.4	7.7	1	23	480	502	480	502	0.98
15	18	0.00024	0.02	15.5	9.5	1	23	508	531	508	531	0.95
16	18	8.4e-05	0.0069	16.9	0.9	1	23	537	559	537	559	0.98
17	18	0.00092	0.076	13.6	3.4	1	23	569	591	569	591	0.97
18	18	1e-05	0.00086	19.8	1.6	1	23	597	620	597	620	0.96

Sequence Information

Coding Sequence: ATGCAGCACGCGAGCGCTGCCAGTTCGGCACCTTCGGTGGTTTCAGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCAGCTTGGGCGGACCGCCGCCATTGCCAAGTGGCAAGCATTCGGAACACCATAAAGAGGACGGCAGCAAGCCGCCGCACGGCATTGAAATGTATAAAGTAAACATTGAGGATATTTCACAGCTATTTACGTATCACGAGGTCTTTGGCAAAATCCATGGCGATGTGTTGCTAATGCCGAAAATGGAGGGCGGCATCCATGGCGTCGATGGGCAGTCGAGCGTTGCGTTGGCGCCGGATGGCACGCCCATTGCGACTGGTACGCATGTGTGCGACATTTGTGGCAAGATGTTCCAGTTTCGCTATCAGCTGATTGTGCACCGCCGCTACCACAGCGAGCGCAAGCCGTTTATGTGTCAGGTGTGCGGTCAGGGTTTTACCACATCGCAGGATTTGACCCGTCATGGCAAGATTCACATTGGCGGTCCCATGTTTACATGCATTGTGTGCTTCAATGTTTTTGCCAATAATACGAGTCTGGAGCGCCATATGAAACGGCATTCAACGGACAAGCCATTCGCCTGCACCATTTGCCAAAAGACTTTCGCACGCAAAGAGCATCTGGACAATCATTTTCGTTCGCATACGGGCGAAACGCCGTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTCTGCGGCAAGAAATACACGCGCAAGGAGCACCTAGCCAACCATATGCGCTCCCACACCAACGAGACGCCGTTCCGTTGCGAAATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTTACGCGCAAGGAGCATTTGTTAAATCACGTGCGCCAGCACACTGGAGAGTCGCCGCATCGCTGCTCCTACTGCATGAAGACGTTTACGCGCAAGGAGCACCTGGTGAATCACATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACATATTGCACCAAGACGTTTACGCGCAAGGAGCATCTAACGAATCATGTGCGCCAGCACACGGGCGATTCGCCACATCGCTGTAGCTACTGCAAGAAGACCTTCACCCGCAAGGAGCATCTGACGAATCATGTGCGCCTGCACACGGGGGACTCGCCGCACAAGTGCGAGTACTGTCAGAAGACCTTTACGCGCAAGGAGCATCTCAACAATCATATGCGTCAGCACTCCAGCGACAATCCCCATTGTTGCAACGTGTGCAACAAGCCGTTCACACGCAAGGAGCATCTGATCAATCATATGTCACGCTGCCACACCGGTGACCGGCCCTTCACCTGTGAGACCTGCGGCAAATCCTTTCCCCTCAAGGGCAATCTGCTGTTCCATCAGCGTAGCCACACCAAGGGTCAGGAGTGCGAGCGTCCGTTTGCCTGCGAGAAATGTCCCAAGAATTTCATATGCAAAGGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGCGAGAAACCGCACGCGTGCACACTGTGCAGCAAGGCTTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCTCCACCCGTGCATCCGCATCCGCAAATACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCACCACTCGGCGACGACCACGATGCACACCATACAGCAGATAACAGCGGGCGCAGCAGCAGCGGGCGCCGGTGCCGTCCAGCTAGCGCCCGGTCTGGTGCCTCTGGTCACCAAAACGAACGTCCCTTCGCTGCTGCAACTGAATGACGATGTTCTAGCCTTGATTCTGGCCCAGTTGAGTGTGTATCAACAGTTTGAACTGACACACTTACACAGTCGTCTGAAGAGTATTGTCCAAACACTCTGGCGCACGCGCGTCCGAACTGTTGTCCTGCAGGATGAGCAACTGTGTCGTGCATCCACGCGCCAATTTCAAAAATTCATAAAGATTTTGGCACAAAATATGGAAGTGCTGCGTTGTCATGAGGTGGATGTGAGAAGATTGCGTATGCTCAATGATCTTCGTCTGCCGGGAGTCACCAGCCTGGAGTGGTTAAGCATTGAGCCACAGCTCAGACGTGGACGTATACGTTTTGTGGATGAGGATGTACGTCTTTTGAGGCGAGTGTTTCCCGCGCTGCGCAAACTAAAGCTACGTGGCTGTCAGATAACAGGAAAGTATCTGTGCGAGCTGGATAGTCTCAAAGAGCTGTGTCTGGACGAGTGTCAGTATCTGGAGTCGCTGCATTTTCATGACATCTTCAAGCATCTGAAGCTTCGCAAATTCGACATTATGGATGATTGTGATGAGGTAAACTGCTGTGATCTGGTTGATGTACAACTGTGTCCCACACTGGAGCACATCAAGATTGCCGATTACCATCTGTGCATGGAGTCGGATATCACACAGCAATTGCTCCTACTGCCCCGCCTGAACAAGCTCTCCATATACTCCAAGAACTTTGTCTTCGACGTGATGGCGCGCGTAGCGCGTCCCATCAATCCAGCTACAGGTGGCATTAAGCTAATAGACGGTTTTTGCTTCAGTGGCCTACTGCATGACTACGAGCGCTTCTTTAGTGAGCTAAGCAATCTGAACCAGCTGCGACGTCTGGAGGTGCACGGCCAGTCAAAGGATGAGGATCCACTGGAGCTAGTCACTGACCAGATGTTGATCCAGTTGGCAGGCCACCTGCCCGATCTGTGCGAGCTGCACGTGTGCGGCCATCAGCTGGAGAGTCCAGAAGGTTTGCTGCACTTTGTGAACAGCTGTCGCCAGTTGCGCATCTTGGACATGTCAAGATCACGTTGCATTGGCGATGCATTCATTTCACGCTGTCTGTCGGTGCTGTCCAAGCTAAGCTGGCGCACCGTACCGCTGGAATTGTGGATAAAAAAGAGTGACATTAGCCCCAGCTGTATGCAAGACCCGCGCTATTTGATAAACGAAAGAATTCTCGTAATTGATACCAAAAAGACGACACCTAATATGGATTATGTGTCCGGTGTGCTCAAATTTAGTTTTTTAAGATAA
Protein Sequence: MQHASAASSAPSVVSAPVVTTGGGTTISLGGPPPLPSGKHSEHHKEDGSKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVLLMPKMEGGIHGVDGQSSVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAAAGAGAVQLAPGLVPLVTKTNVPSLLQLNDDVLALILAQLSVYQQFELTHLHSRLKSIVQTLWRTRVRTVVLQDEQLCRASTRQFQKFIKILAQNMEVLRCHEVDVRRLRMLNDLRLPGVTSLEWLSIEPQLRRGRIRFVDEDVRLLRRVFPALRKLKLRGCQITGKYLCELDSLKELCLDECQYLESLHFHDIFKHLKLRKFDIMDDCDEVNCCDLVDVQLCPTLEHIKIADYHLCMESDITQQLLLLPRLNKLSIYSKNFVFDVMARVARPINPATGGIKLIDGFCFSGLLHDYERFFSELSNLNQLRRLEVHGQSKDEDPLELVTDQMLIQLAGHLPDLCELHVCGHQLESPEGLLHFVNSCRQLRILDMSRSRCIGDAFISRCLSVLSKLSWRTVPLELWIKKSDISPSCMQDPRYLINERILVIDTKKTTPNMDYVSGVLKFSFLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -