Basic Information

Insect: Scaptomyza graminum
Gene Symbol: -
Assembly: GCA_018901835.1
Location: JAEIFL010000303.1:3009929-3013922[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 5e-05 0.0033 17.6 0.2 1 23 150 173 150 173 0.96

2 14 0.0014 0.088 13.1 2.9 2 23 222 244 218 244 0.89

3 14 0.0071 0.46 10.8 0.8 1 23 363 386 363 386 0.93

4 14 0.36 23 5.5 4.3 2 23 435 457 434 458 0.96

5 14 0.0034 0.22 11.8 0.6 1 23 520 543 520 543 0.88

6 14 1.9 1.2e+02 3.2 0.1 2 14 562 574 561 586 0.85

7 14 0.00065 0.042 14.1 3.3 2 23 594 616 594 616 0.96

8 14 0.0003 0.02 15.1 0.1 1 23 717 740 717 740 0.95

9 14 8.2e-05 0.0053 16.9 0.2 1 23 785 808 785 808 0.94

10 14 0.0011 0.071 13.4 2.2 2 23 858 880 857 880 0.97

11 14 0.003 0.19 12.0 1.7 1 23 964 987 964 987 0.91

12 14 0.05 3.2 8.2 1.5 1 21 1039 1059 1039 1060 0.95

13 14 0.068 4.4 7.7 0.3 3 23 1104 1127 1103 1127 0.94

14 14 0.45 29 5.2 0.5 1 23 1145 1169 1145 1169 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	5e-05	0.0033	17.6	0.2	1	23	150	173	150	173	0.96
2	14	0.0014	0.088	13.1	2.9	2	23	222	244	218	244	0.89
3	14	0.0071	0.46	10.8	0.8	1	23	363	386	363	386	0.93
4	14	0.36	23	5.5	4.3	2	23	435	457	434	458	0.96
5	14	0.0034	0.22	11.8	0.6	1	23	520	543	520	543	0.88
6	14	1.9	1.2e+02	3.2	0.1	2	14	562	574	561	586	0.85
7	14	0.00065	0.042	14.1	3.3	2	23	594	616	594	616	0.96
8	14	0.0003	0.02	15.1	0.1	1	23	717	740	717	740	0.95
9	14	8.2e-05	0.0053	16.9	0.2	1	23	785	808	785	808	0.94
10	14	0.0011	0.071	13.4	2.2	2	23	858	880	857	880	0.97
11	14	0.003	0.19	12.0	1.7	1	23	964	987	964	987	0.91
12	14	0.05	3.2	8.2	1.5	1	21	1039	1059	1039	1060	0.95
13	14	0.068	4.4	7.7	0.3	3	23	1104	1127	1103	1127	0.94
14	14	0.45	29	5.2	0.5	1	23	1145	1169	1145	1169	0.82

Sequence Information

Coding Sequence: ATGGAAGGCATGGATCTGTGGACATCTATGTTTTCGGCCGACTTTGAAGAGAGTGATGTCGAGCCAAACAGTCATAGTTATGCAGACGAGTATACGGGCGAAGACGAAGATGCGAATGGGCAAGAGGCTTGTAATAATGACGAAGCCGAAAAAGGACCCGACCCAGATGACGATGCTTTATTTGATTTTGAACTAACACCATCTGTTACCCTTGCGGAGCCCGATCAAGAATCACCGCCTAGACTGTCTGTAAGATTGGCGCCGCCAATGCCGGTTGCTCCGCCTGTGCGAGCCCCGCATCATCATCAATCAACGTATGGTTCCTCTTCTTCACTGACAGGAGGAGGTCGCTGTGAAGCCGCCGCCCCATCCACACGACCAACGACATCACAAATTAATGCTATTGACGAGAACGGAGTGCCCATTAATTACGAACTAGGCGTCATCTACATATGCCCTTCCTGCGGTACCGAATACCGACAGCAGGATATGTGGAAACGTCACATGAACCAGATTCATCAGTATAACACACGCCGTGGCCTCAACTTTGTGGCCATCGATAAGCTGTATCATCGATGCCTGGAGTGCAACAAGCGGATTGCGATGCACAGTCGCGAGAATCTGCTCAAGCACAAGTTCACCCATTTGCCATATCGTTGCACTAAGTGCTACATCTGCAAGCGGGAGTACAAGTACAGGCAAGATCTAATGGTGCACCTGCGCATGGTACACTGTGACGAGGTGATAGCCATGATGCGTAATAGTGATGTCAGTGCTGGACGCAAAACTCGAGTCCGTTTACCGCGTGTCCATTTACCGCGTGTGGAGCACCGTGTTCAAAGTACGGGCAGGTTCTATTCGATCGCCAATGGGCCGGTGCCAGACGATGATGATTGTATAGAGGTGAAAAACGAGCTGATGGATGCGGAATTAATTACTGCCGATGCAAGTCGTGACGACAATGACCGTTTAAATCGCAGCTCAAATCAGACGCAGAAAAAGCGTAGTAATGCACTTACAGGCGCTGGCAACGCCGACAACGGTCATGGCAGCGGCGCGTCGGATATCTGCGAGGATTATATACATTACATGTGCCCCGATTGCGGCACCGAGTGCGACACGCATGCACAGTGGAGCCAACACATTGAATTCGTGCACGACTATGTCAGCCGACGGGGATTGAACTTTCGTAGCGTTGACATGCAGATGCAGTGCATCGAATGCAAGAAGTTTGTCACCCCAAATTCGATCAGGACCCTGCGGGCGCACAAGTTTAGCCATTTGCCGCAGCCAGATTGGATGCGCTGTAAACTGTGCTATCAGGGATATACGGAGCATCATGAGCTGGTCGCACATTTGCTAACGAAGCATCATCTGAACACATTAATGCTCGAAAAGGAGCAGGAGGTGAGGCTTACTGCCACTGCCGGTGATGATGCTGAGGACAACTGCGGCATTGATAATGGTTGCGATGATGAATCCCTGTTGCAATTTGATGACGGGCCCCGTCGTGGCGGTCGCATCAGTCTCGATGATATGTACGAGACACACATTGATTATTTGTGCCCGCAGTGCGGCCGGGAGTTCATTGAGAAGAAGCACTGGCGCACACATGTCGTCCAGATGCATGGCATGAATGATCTGGCCAAATTGAACTTTGAGGTCGTCAACGATCGTCAGCTTAAGTGCACTGAATGTGACAAGATCATAACGAATGCCTATGGCATACAGAATGCTCAGCAGCACAGGATTACCCATCTGCCCTACAAGGCTTATGCGCGCTGTCGAAAATGCCACAAATCCTATACTGATCGCAAGGGGCTGGTCAAGCATTTGGCCACATACCATCGCGTCGGCTATGAGCCGCGCAAATCCGGGGCAGGAGGCGTGATTGCCGGTGCAGGTTTAAGCCCGATTAAGCCACAAACGCCGCGCAAGCAACTTGTGACTGTGGCCAATGAAACGTATGAGATTACCTATTTGGATGAGGAGCAATCGCCGCCAAGTTGTAACAACGTTAATGAGGAAAACGATTTTGGCGAGCAAATGCAAGCGGATGATGATGATTATGCCATTGGCAGTAGCAGTTCACACGAGTTGCCACCAGCTGGCGCCAGTACATCTGCATCCAATTCGAATACAAATCGTTATAAATGCGTTGATTGTGGCTCCTTGTTTGCAACACAAGCAGCACTAAAAAAACACATAAGCGAGGAGCACGATTTTATGGACACACAATATAGTGACAAAAAATGTACAGATGAAGCAGCGCTAGCAACAACACCAACTGAAGCCGTCACCTCACCACCGAAAATCTTTACTGGCGGTTCGACAATCGAACAGAACTATATATATCTGTGCCCGTCTTGTGGCAAGCCGTATAAAACGCAATTCGAGTGGCGTCGCCACATCAACGAGGTGCACAACTTTGATAAGCGGCAATCTTTGAATATGCGTCAGCTGGACAAATATCGCTATCAGTGCACACAATGCAAGGATATTGTAAGCAATTCAAAACTAAAAGGGCTGCAGGATCATCACTTTCGACATCTGCCTTATAGGCTGTACCTTAAGTGTCTAGTGTGCGGTACCTGCTATAATCACAAGCCAAACATTGCTGCCCATCTACGCACGCGTCACAACATCTGTGAGCGCGGTACGCCCTGGCGTGATATGCAGTCTAAGCCTCAGAATGGCTTTGAAAACACTCAGTACAAAGATAGGGATTTACGAGATACTCCGGATAAGTCCGACTCACCCACGCCTGCGAGCAGCAGCAGCAACAGTGGTCGCGCCCTAAAACAGCAGGTCGGATTGCGACCCGCTGGCCTAAATACACTGGAGGATAGCATCTCCTATCACAATGCTGTGGATCTGGACTTCATTACGTATTTTTGCCCCAAGTGCAACAAAAACTTTGATTCGCACGCGTTCTGGCGCAAACACATTGTCGAGGAGCACAACTTGAACAGCCGACAGGGCTTGAACTTTCGCCAGATTGACAATCATCACTATTTGTGTCTGGAGTGCTACAAACGGGTGACTGTGACCCACACCAAAGGTGCCATTGGTCAGCTGCAGTCGCACAAGTTTCGACATCTTCCTTATCGCTCCTTCAAATGCTTGACCTGCAACGGTGAATTTGTGCGCAAGCAAATGTTTTTCAAGCATCTGAACCGCGACACCAATCGCTGCGATAACAAACCCTTGAGCGAAGAGAATTTCGATAAAGATCATCGCGTTGCAGAGCAGCCGGAGAGAGAAGCGTCGATTAACGATGCAATTGATGCCGCTTCGTATCGTTTGCTGTGTCCGCAGTGCGGCGATAATTTTAGCACCAGCTCCAAATCCCTGTGGCGTCGGCATATTAACATTCAACATGGTATGGGCAAGCGTGAGGCGCTGCACATCCGCAAGCTAGGCGAAGAGCTCTATCGCTGCACGGATTGCGACGAGCAGCTGCCAACGAAACAATTGCGTGCTTTGCAGGATCATCGCTTCCGTCATTTGCCCTATGCTGCCTATATACGCTGCAAGCTGTGCGAACAGCAACTTCCAGATGAACTCGGTCATGGGCCCGTTGCAGCCGGAATGCACAGCATGCTTGAGCTTCAACAACATATGCGCGATGAGCATCCAGCGTATGCAAAAAGCGATCAGCAAGTGCTTTCCGATGCGGATGTGGATGATGACAGTCAGCTCTCTGCGATTGCAACTAACAACGAAGCGTCCGACAGTGAATCGTATATACCAATGCCGGTAGAAATGCTCCTTGACGGCGAAGGAGATGAGGATGTGGCGGCAGCTTGCAATGACGCTTCCGGCAATGGGCGGTATATGCCACTGCCGCCACATTTGATGGACGACGAAGTTGAGGACATAGAGTTCGAAGATCAATATCTACTCGGCTAA
Protein Sequence: MEGMDLWTSMFSADFEESDVEPNSHSYADEYTGEDEDANGQEACNNDEAEKGPDPDDDALFDFELTPSVTLAEPDQESPPRLSVRLAPPMPVAPPVRAPHHHQSTYGSSSSLTGGGRCEAAAPSTRPTTSQINAIDENGVPINYELGVIYICPSCGTEYRQQDMWKRHMNQIHQYNTRRGLNFVAIDKLYHRCLECNKRIAMHSRENLLKHKFTHLPYRCTKCYICKREYKYRQDLMVHLRMVHCDEVIAMMRNSDVSAGRKTRVRLPRVHLPRVEHRVQSTGRFYSIANGPVPDDDDCIEVKNELMDAELITADASRDDNDRLNRSSNQTQKKRSNALTGAGNADNGHGSGASDICEDYIHYMCPDCGTECDTHAQWSQHIEFVHDYVSRRGLNFRSVDMQMQCIECKKFVTPNSIRTLRAHKFSHLPQPDWMRCKLCYQGYTEHHELVAHLLTKHHLNTLMLEKEQEVRLTATAGDDAEDNCGIDNGCDDESLLQFDDGPRRGGRISLDDMYETHIDYLCPQCGREFIEKKHWRTHVVQMHGMNDLAKLNFEVVNDRQLKCTECDKIITNAYGIQNAQQHRITHLPYKAYARCRKCHKSYTDRKGLVKHLATYHRVGYEPRKSGAGGVIAGAGLSPIKPQTPRKQLVTVANETYEITYLDEEQSPPSCNNVNEENDFGEQMQADDDDYAIGSSSSHELPPAGASTSASNSNTNRYKCVDCGSLFATQAALKKHISEEHDFMDTQYSDKKCTDEAALATTPTEAVTSPPKIFTGGSTIEQNYIYLCPSCGKPYKTQFEWRRHINEVHNFDKRQSLNMRQLDKYRYQCTQCKDIVSNSKLKGLQDHHFRHLPYRLYLKCLVCGTCYNHKPNIAAHLRTRHNICERGTPWRDMQSKPQNGFENTQYKDRDLRDTPDKSDSPTPASSSSNSGRALKQQVGLRPAGLNTLEDSISYHNAVDLDFITYFCPKCNKNFDSHAFWRKHIVEEHNLNSRQGLNFRQIDNHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLTCNGEFVRKQMFFKHLNRDTNRCDNKPLSEENFDKDHRVAEQPEREASINDAIDAASYRLLCPQCGDNFSTSSKSLWRRHINIQHGMGKREALHIRKLGEELYRCTDCDEQLPTKQLRALQDHRFRHLPYAAYIRCKLCEQQLPDELGHGPVAAGMHSMLELQQHMRDEHPAYAKSDQQVLSDADVDDDSQLSAIATNNEASDSESYIPMPVEMLLDGEGDEDVAAACNDASGNGRYMPLPPHLMDDEVEDIEFEDQYLLG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01320714;
90% Identity: -
80% Identity: -