Sgra009593.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scaptomyza graminum
Gene Symbol
RREB1
Assembly
GCA_018901835.1
Location
JAEIFL010000001.1:13433242-13440639[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.028 1.8 8.9 0.8 1 21 44 64 44 66 0.93
2 13 0.00026 0.017 15.3 0.2 1 23 76 98 76 98 0.98
3 13 2.8 1.8e+02 2.7 2.2 1 12 104 115 104 118 0.89
4 13 0.11 7.4 7.0 1.2 2 20 348 366 347 368 0.93
5 13 0.012 0.81 10.1 0.2 1 23 523 545 523 545 0.97
6 13 9.7e-06 0.00063 19.8 0.7 1 23 555 577 555 577 0.99
7 13 0.00065 0.042 14.1 2.0 1 23 583 606 583 606 0.97
8 13 0.0023 0.15 12.3 2.0 1 23 878 901 878 901 0.95
9 13 6.8e-05 0.0044 17.2 0.3 2 23 1264 1285 1263 1285 0.97
10 13 0.11 7.4 7.0 6.3 1 23 1291 1314 1291 1314 0.97
11 13 7.4 4.8e+02 1.3 3.4 1 23 1427 1450 1427 1450 0.78
12 13 0.0066 0.43 10.9 0.5 3 23 1514 1534 1512 1534 0.96
13 13 0.0011 0.068 13.4 4.8 1 23 1540 1562 1540 1562 0.99

Sequence Information

Coding Sequence
ATGGCGTTTCGGGGGGGCTACGGACAAACTTCAAGCGCTAGCAGTTCGGGTGGCTCATCGCCTCAGGGTCTCTCCTCGTGCCCATCGAGTGCCGAATCGGGCATCGGTGCCGGAGATGAGCACATGAAATATCTATGTCCGATCTGTGAGGTTGTTTCGGCCACGCCCCACGAATTCACCAATCACATACGTTGCCACAATTATGCCAACGGCGACACCGAGAACTTCACCTGCCGCATCTGCTCGAAGGTTTTGTCATCGGCATCCTCCCTAGATCGTCATGTCTTAGTTCATACGGGAGAGCGTCCATTCAATTGTCGGTATTGCCATTTGACCTTCACCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCGGGATCGGCTGGACAGTTGCTGCCAGCTCGAGCTGAGAGCTATGAGAGTGATGCCAGCTGTTCGACAGATGTGTCCAGTGAGGCAAACAGTCACAGCAGCAACAGTAATCACAACAACAACAACAACAATAGCCACAAAACAAACAACAACAACAACAATGAGGAGGAAATGGAGCTGATGGAGGATGAGCTAAAGCAGCGACGCCGCAAAACAACCTTGAACAACAACAACAACAGCATTGTTAGAGATGATCAGGATCGGGTGGATGACGTCGAGGATCGGGATAATGATTCGGATGTGGATAGCGGTGATAGCGTTGCCCAGATCATAACCAGTACACCAGATGTGGCAACTCTGCTCGCCTCGGGTGGCACCTCACCCACCCACTCGCAATCGCCCTCACCGCGCCTCCGGCAGCTGCAGAGCTGCCCGGCCTGCAATATGGGTGAATTTGAATCCGTGCCAGCGCTGTGCGCTCATCTCGATGCCGAGCATTCGGACATACCGGGCAAGTGTCGGGAGTGTGAGGTCATCTTTGCCACACATCGACAGCTGCAGGCGCACAGTTGTCGGGGACTACCACCGCTGCTCGGTGCTAGTTCCTCCCCGCTGCACAGACACGAAGAGGACGAGGAGGGGGAGGACGATGACGACGATCGCCGCCGCCAGCAACACCAAGAGGATGAAGAGGATGATGATGATGATGGGGAGGAGAAGGAACAAAAGGATCAGTTAGAGCAACGAGAGTGTGAAGATTTCTTTCAGCAACTGTACCTCAAAAATAAAGACTCAACAACAAACCTACTACCCTCCCCCATCAAACATGAACCGACAGATCAGCGTCAGGATCTAGCCGACATCCAAAGCATTCTCAACATGACCAGCTCCAGCTGCACCTCAAGTTTCCTGCGCAACTTTGAGCAATCGGTGAATACACCCTGCTCCAGCCAGTACAGCGTGGATGGTCGTGACGGCGAGGAGGAGGCACAGGACGCCTTCACCAGTGAATTCCGACGCATGAAGCTACGCGGTGAGTTTCCCTGCAAACTTTGCACGGCCGTCTTTCCCAATCTGCGTGCTTTAAAGGGACACAATCGCTATCATCTGTCGGAGGTAGGAGCAACCGGACCCTTTCGATGCAACATGTGCCCCTATGCCGTCTGCGACAAGGCAGCCCTGGTACGTCACATGCGCACCCACAATGGGGACCGTCCGTACGAGTGTGCCGTCTGCAATTATGCCTTTACCACCAAGGCCAATTGCGAGCGACATTTACGCAATCGTCATGGCAAGACGAGTCGCGACGATGTCAAGCGTGCCATTGTCTATCATCCAGCCGAGGATGCCAGCTGTGAGGACAACAACAATAGGTCACGTTCCGATGCGGATCTCTTGACCGATTTGAGCGCTGGTAGTGCTGCGGGTGCTGGTGGTGGTGTTTTTCGTTGTGCTACACCCACGGAGCATAGCTCGTCGGCCAGCTCGTCGCAGTCACAATTAAAGCACATGTTGCTGGCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGATTCAAGTAAAGAGCTTGGATCAGCTGGTGGATAAGCCGATGCCAGCCTTGGATCTGAGTATGGATGTGCTGGACTTGAGCAAGAAGCCTGCACAGCTGCTAACTGAACAACGAGAGCAAAGGGAGCAGTTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGCATTGCCGCTGTCACTGCCTGTGCCGCTGTCCCTGCCCCTGCCTCTTTCCGCCGGTGGCCCCGTCAAGATGGTCATCAAGAACGGTGTCCTAATGCCAAAGCAAAAGCAACGTCGCTACCGCACCGAACGTCCCTTTGCCTGCGAGCACTGCTCGGCGCGATTCACGTTACGCTCGAACATGGAGCGGCACGTGAAGCAGCAACATCCTCAATACTATGCAACACGGCAGCGCAGCGGACATCATGTGATGCGTGGACGTGCTGCGTCCTCCCAGGCTCAAGCTCAAGCTCAAGCACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCGATTTCGGAGCAGGTCAAATATGCGATCTTGGCACAACAGTTGAAAGCGCGCAAGGATACGGATCTGTTGCAGCAGGCACTGGCCCATGGCTCCAGCAGTGTCGTTGCAAATTCCCTCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAGATGATGATGAGCCGCCGAAGCTAATTATAGACGAAGATGATGAAGATGCAGAGGGATGTGTGGATGACGAAGAGGACGACATGGAAATGGAGGAGGAGGAGCAGGATTTGGATGACATGGATGAAGAGGAAGAGCAGGAAGCTGAGGAGATGGTGCAGCAGCAACAACACCGGCAAGAGGAGAATGAAACCAAGTCAACTAAAACGGTGCCCAAACCCATGGAGGCTGCCAAAAAAGTCGCCGAAATCATTCTCGAGCAAGCAATCAAGGAGCAAGAGAGAGAGCAACAGCAGCCCGAGAAACCCGAGAAGTCCGAGAAGACCGAGAAGCCAACACCACAATTGGAGAAGCCGCAACAAGCAACCCCGACGACAATGAAAACAATGATTGCCCAAGCCGAATCGGTGGCCAAATCATTGAAGGAGGTTGCCAGCTCACCATTCAAGGATGAATCTCAGGATCTGGTGCCGGTGGCCAAACTGGTGGACAATGCGACCAGCAATCAGGTATCGTTCAACAGCTATTTCCGGCCCAGCGACGTTGCCAATCACATGGAACAGAGCGATGAGGAAGGTCTCGTTGCCAGCGGCAGCGCCAGTGAGAGCAACAACTCGGGCACCGAAGATGTCACCAGCTCCAGCAGCAGCTGTGGCAATGATACCAAGAAAAAGTCCGCATACAGCTTGGCCCCGAATCGAGTCAGTTGTCCGTATTGCCAGCGCATGTTTCCCTGGAGCAGCTCGTTGCGTCGACACATCCTAACCCATACCGGGCAGAAGCCCTTCAAGTGCTCCCATTGCCCGCTGCTCTTCACCACCAAGAGCAACTGCGATCGCCATCTGTTGCGCAAGCATGGCAATGTTGAGTCCGCCATGTCCGTGTATGTGCCCACCGAGGATGTGAGCGAGCCCATACCGGTGCCCAAGTCGGTGGAGGAAATCGAGCTGGAGGAGCAGCGTCGGCGTCAGGCGGCCGAGGCTGAACAGGCCGAACGGGAACGGGAAAGGGAGCGGGAAAGGGAGCGAGAACGGGAGCGCGAACGGGAACGTGAGCAGCAACAATTGATTCAACAACTGCGTCAACAAATGGCTGCTGCCGCTGCAGCTGCAGCAAATGCCGCCGTCGTTGTCGCCGCCGCTCCGGCTTCACCGCCAACTGTTGGTGCCTTGGAGGCGAGCAGTGATCTGCCCTACAAGTGTCATCTGTGCGAGTTTTCCTTTGGCGAGCGACTGCAATGTCTCGAGCATATCAAGCAGCTGCATTCCCATGAGTTTGCGCTCCTTTTGGCCAAGGGTGCGATCGAAACAGATGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATTCGAACCGGCGGCAAGTATCCCGACTATAGCAATCGTAAAGTGATCTGCGCCTTTTGTGTGCGTCGCTTTTGGTCAACGGAAGATTTGCGCCGCCATATGCGCACCCATTCCGGCGAACGTCCGTTCCAATGCGAGATCTGTCTGAGGAAGTTCACGTTGAAGCACAGCATGCTGCGGCACATGAAGAAGCACAGTGGACGCAGTCACAATGGCGGCGAACTTGATCATCAATCCGATTGCTCCGATGATGAGCAGCTGTTGTCGTGCTCGCCGCCAACAACGCCCACACCCACCAACAACAACAGCAACACTTGCCAGAACAACAACAACAACATGAACAACAACAACAACACAATGAACATGAACAACACAAAGCAAGTGCTGCGAGAACTCTTGGGCAAGGCCAACGAGTGGCGCATCAATCGTTTGGGTGGCGGAGAGCACAAAGAGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGTATTAGTGATCAGGGCATACTTAATAAGTTGCTCTCCTCACCGGACGAAGCAGCCAAGCTTCTCGGCGTGGAGAAGTAA
Protein Sequence
MAFRGGYGQTSSASSSGGSSPQGLSSCPSSAESGIGAGDEHMKYLCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSAGQLLPARAESYESDASCSTDVSSEANSHSSNSNHNNNNNNSHKTNNNNNNEEEMELMEDELKQRRRKTTLNNNNNSIVRDDQDRVDDVEDRDNDSDVDSGDSVAQIITSTPDVATLLASGGTSPTHSQSPSPRLRQLQSCPACNMGEFESVPALCAHLDAEHSDIPGKCRECEVIFATHRQLQAHSCRGLPPLLGASSSPLHRHEEDEEGEDDDDDRRRQQHQEDEEDDDDDGEEKEQKDQLEQRECEDFFQQLYLKNKDSTTNLLPSPIKHEPTDQRQDLADIQSILNMTSSSCTSSFLRNFEQSVNTPCSSQYSVDGRDGEEEAQDAFTSEFRRMKLRGEFPCKLCTAVFPNLRALKGHNRYHLSEVGATGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSRDDVKRAIVYHPAEDASCEDNNNRSRSDADLLTDLSAGSAAGAGGGVFRCATPTEHSSSASSSQSQLKHMLLAXXXXXXXXXXXXXXXXXXXXXXXKIQVKSLDQLVDKPMPALDLSMDVLDLSKKPAQLLTEQREQREQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALPLSLPVPLSLPLPLSAGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQYYATRQRSGHHVMRGRAASSQAQAQAQAHXXXXXXXXXXXXXXXXXXXXXXXAPISEQVKYAILAQQLKARKDTDLLQQALAHGSSSVVANSLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDDEPPKLIIDEDDEDAEGCVDDEEDDMEMEEEEQDLDDMDEEEEQEAEEMVQQQQHRQEENETKSTKTVPKPMEAAKKVAEIILEQAIKEQEREQQQPEKPEKSEKTEKPTPQLEKPQQATPTTMKTMIAQAESVAKSLKEVASSPFKDESQDLVPVAKLVDNATSNQVSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSSCGNDTKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIELEEQRRRQAAEAEQAEREREREREREREREREREREQQQLIQQLRQQMAAAAAAAANAAVVVAAAPASPPTVGALEASSDLPYKCHLCEFSFGERLQCLEHIKQLHSHEFALLLAKGAIETDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRTGGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGRSHNGGELDHQSDCSDDEQLLSCSPPTTPTPTNNNSNTCQNNNNNMNNNNNTMNMNNTKQVLRELLGKANEWRINRLGGGEHKENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISDQGILNKLLSSPDEAAKLLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-