Sgra007225.1
Basic Information
- Insect
- Scaptomyza graminum
- Gene Symbol
- ken1
- Assembly
- GCA_018901835.1
- Location
- JAEIFL010000243.1:13930633-13932924[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.044 2.8 8.3 6.7 3 23 229 249 227 249 0.96 2 12 0.00074 0.048 13.9 0.3 1 23 255 280 255 280 0.93 3 12 0.0015 0.095 13.0 1.6 2 23 288 312 287 312 0.93 4 12 0.0005 0.032 14.5 4.6 1 23 322 344 322 344 0.97 5 12 0.00048 0.031 14.5 1.7 2 23 352 373 351 373 0.96 6 12 0.0062 0.4 11.0 0.5 1 23 379 401 379 401 0.97 7 12 0.045 3 8.3 2.6 1 23 407 430 407 430 0.97 8 12 0.016 1.1 9.7 4.1 1 23 436 458 436 458 0.95 9 12 0.008 0.52 10.7 2.3 2 23 465 486 464 486 0.96 10 12 0.00015 0.0097 16.1 0.8 1 23 574 597 574 597 0.96 11 12 0.0082 0.53 10.6 3.1 1 23 603 625 603 625 0.95 12 12 1.6e-05 0.001 19.2 4.0 3 23 633 653 631 653 0.97
Sequence Information
- Coding Sequence
- ATGCAAGAGGAGAAGCAAATCTCTATTCATGCAGTGTGCCGCACTTGTTTGGCAAACTTGCAGAGTACTGCTGCCTACAATCTGTTTGTGGTTCCCGGACTTGCCAAAAAACTTTGTATGTGCACTTCACTTTCAGTGGAAGAGCAGGATGGCTTCCCGAAAAACCTTTGCCCAAATTGCTATACCCGGCTAACCGATTTACATGATTTTCGAATGAAATGCGCGTATTCAATGAAAAAGTTAAAAGATTTGCTATCTAGCAATTATTTTACAACCGATACTGACAGTTTTGATTTGCTAAATGTGGCTTCAGAGGATGTTGATATGCTGATCGAGGAGGACGAGAACATTAATTTTGATCCACTTATAAATACAAAAATTGAGATAATTGAGAATGAGGAGGTTGTCTTCAAAATGTTAGAATATGTCGACAAAGAAGTGAACCAGGAAGAGATGGCGAAAGACTCCTCCAGTGATACCGAACACAACTTTTTGAAAAATTTACACTGTGAAGCGAAAAGCAGCGACTCTGACGACGCCTTGCCCCTTTCCCGATTAAGGAATTCAACAAAACATGCTCCGGATAGCGATGATTATAGCTCAAGCTCTGATATCCAGGCAAAATACACGAGAAAGCAGAAGCGAATTCCGGCCACTGAGCGTGATTTGCGTCAACTGATAGATTGTCATATATGTCATCAGAAATTCAAGAAGGCGAATCGTTATGAAGAACATATGAAGCATCACAACGATCTTTTGCCATTCCAGTGTGCTGTAGAGACCTGCAAGAAGGGTTTCACTACTGCTGGTGGTCTGCGTCTTCATATGGACCACGCGCACTCAGATCTGTGCGAAGTGCATGCCTGCAGTGTGGAAGGATGTGACATGGTATTCCCCCGTACACGAACGCTTACACATCACCTGAAAAAGGTCCACAAAATTGCTAAGCCTGAGATCCGTGATCATCCTTGCACGGAGTGCAATAAGGTGTTTCGGTGCCCAACAGCTCTTAAGAAACACATGTACAAGCACACTGGCGAGGAGCTGCCGATTTCCTGTAACATCTGTAGCAAACGCTTCCACATCAACAGTGAACTTAGAGATCATCTCCTGCGGCACGCTGGCGTTAAGAACCATGTATGTCCCTATTGCGGTGTCGGTAAAACAACTCGTCAGGAGTGGAACAAACACATATTGACCCACACCAGGGAAAAGCAGTTCCAGTGTCGCCAGTGCGATCATGCCTCCCACAATAAACAGGCTTTGTCCAATCACGTCAAGGTGGTACACATGAAGATCAAGAACTTTGCGTGTCAGTATTGCGGCAAGACCTTTGGCAAATCTCATGCCTGTAAGATCCACGAGAGGCTTCACACTGGCGAAAACTGTTGCGAGTGCAAGATCTGTGGCAAGATCTTCCTTTTCGAGAAGAGATTGACCAAGCATTTGCAGATCCATGAGAAGCGTGATATAGCCCCCTCTGCGACTACTGTTAAGCCACCGGACAATCAGAGTCTTCCTAATGCTCAAAACTTGAGCCAGCACTCTACTGAGACGGGAGATGTGACATCAATGCCAGCAGTCTCTAAGCCCAAGAATTCTCATCGAGTTGAGCGTGTGGAAATGTCACAGCTGGCTGGAACATCTGTCAATCCAATATCCTCGGTATCTGTGCCATCCTGGTCGCCGCAAGTCAACTTCACAATAAAGGAAGGACAACACATTTGTCCAGGATGTGGACGTGGCTTTAATCACATTGGAAATATGAAACTTCACTATAAGGTCATACACGAAAAGGTGAAGGACTTTGCTTGTCGCTTCTGCCCTAAGCGTTTTGGCAAGGCCCAATATCTTCGTCATCATGAATATACACATACGGGCGAGAGACCCTATGGTTGTAAAATATGCGATAAGCATTTTAGTCATGGATCATCATTGAGGAAGCATATGATTTCACACAACAGACTGCCAAAAGCCCCAAAGGTACCAAAGGACGCGACTAAGTTTAAAGAGCATCAGAAGCCGAATATCGAACTGAACATGCGTCCAATAAAAAACTATGAACAGTACAAGGATCCAGCTGCAGAACGTGCTGCTGCTACCGCTGAATTGCTGGCTCAGCGGCTTGAGGAGAGTGAGTCCAAGCGAAAGGCGGAAGCTAGGGCTCGATCGATTCAAGAGGCCGCGTGCGAGCAGCTGCAGAAACTGCAGAAGGAACCGCTTATCGAGAAAATTTCCAATTATAGTAGCTTTCAAATTAACAGGTCTCAGACCGTTTTAAGTGTGGATTAA
- Protein Sequence
- MQEEKQISIHAVCRTCLANLQSTAAYNLFVVPGLAKKLCMCTSLSVEEQDGFPKNLCPNCYTRLTDLHDFRMKCAYSMKKLKDLLSSNYFTTDTDSFDLLNVASEDVDMLIEEDENINFDPLINTKIEIIENEEVVFKMLEYVDKEVNQEEMAKDSSSDTEHNFLKNLHCEAKSSDSDDALPLSRLRNSTKHAPDSDDYSSSSDIQAKYTRKQKRIPATERDLRQLIDCHICHQKFKKANRYEEHMKHHNDLLPFQCAVETCKKGFTTAGGLRLHMDHAHSDLCEVHACSVEGCDMVFPRTRTLTHHLKKVHKIAKPEIRDHPCTECNKVFRCPTALKKHMYKHTGEELPISCNICSKRFHINSELRDHLLRHAGVKNHVCPYCGVGKTTRQEWNKHILTHTREKQFQCRQCDHASHNKQALSNHVKVVHMKIKNFACQYCGKTFGKSHACKIHERLHTGENCCECKICGKIFLFEKRLTKHLQIHEKRDIAPSATTVKPPDNQSLPNAQNLSQHSTETGDVTSMPAVSKPKNSHRVERVEMSQLAGTSVNPISSVSVPSWSPQVNFTIKEGQHICPGCGRGFNHIGNMKLHYKVIHEKVKDFACRFCPKRFGKAQYLRHHEYTHTGERPYGCKICDKHFSHGSSLRKHMISHNRLPKAPKVPKDATKFKEHQKPNIELNMRPIKNYEQYKDPAAERAAATAELLAQRLEESESKRKAEARARSIQEAACEQLQKLQKEPLIEKISNYSSFQINRSQTVLSVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01326676;
- 90% Identity
- -
- 80% Identity
- -