Sgra000168.1
Basic Information
- Insect
- Scaptomyza graminum
- Gene Symbol
- -
- Assembly
- GCA_018901835.1
- Location
- JAEIFL010000016.1:856286-860653[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.072 4.7 7.7 5.8 2 23 357 379 356 379 0.96 2 17 0.017 1.1 9.7 1.8 2 23 422 443 422 443 0.93 3 17 5.2 3.4e+02 1.8 3.0 2 17 454 469 453 480 0.75 4 17 4.7 3e+02 2.0 0.5 3 23 484 505 483 505 0.92 5 17 0.6 39 4.8 1.7 3 23 513 533 511 533 0.90 6 17 0.0037 0.24 11.7 0.1 1 23 541 564 541 564 0.97 7 17 0.0013 0.085 13.1 0.0 2 23 569 590 568 590 0.97 8 17 8.9e-05 0.0058 16.8 0.4 1 22 638 659 638 662 0.90 9 17 0.19 12 6.3 1.3 3 21 669 687 669 688 0.90 10 17 0.005 0.32 11.3 0.7 1 23 707 732 707 732 0.96 11 17 0.011 0.69 10.3 1.4 2 23 748 770 747 770 0.93 12 17 0.0073 0.47 10.8 0.2 2 23 776 798 775 798 0.92 13 17 0.003 0.2 12.0 0.2 2 23 802 824 801 824 0.96 14 17 2.9e-05 0.0019 18.3 2.5 1 23 830 852 830 852 0.98 15 17 0.017 1.1 9.6 0.6 2 23 857 879 856 879 0.93 16 17 3.3e-05 0.0021 18.2 2.0 1 23 885 908 885 908 0.97 17 17 0.021 1.4 9.3 0.7 5 23 921 940 912 940 0.83
Sequence Information
- Coding Sequence
- ATGTCGGAAAGCGTAAAAAATACGAAAAGTGTACCTAGCTGCCTGCATTGCAGAGCATGCAATTCAAAACAACAATATCAAGAAATATTCGATAAAGTGGGCATTGAAATAGATCTTGCCAAACTAGTTGCAAAGTATTTTAAAATAATTGTTAAACCAGACGCTAAAAAGCCGCAGCAGCTATGTGGAGAGTGCGTTAATAATCTCATACGTTCCTTTGATATCGACGAACACAAAAAGAAGAAAGATGCTTCAAATGCTGCTAAAAAAAATAACCATAAGAACGCTAAAATTGTTACGCCAGTGCCTCCGGCACGCCCAGCTGCCGCCAAGATAGGTGTTGCAATTTCCGCCAAAAAGAGGACAGCTGTTCCGAATACTACACAAATTCATACAAACGTCTCAGCAGCAGCATCGACAAAGCAAGCAAAGCTAACGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCAAGAACCAGTTGATATTCGTATCACTAGAGCCAGAAACGCTCCGCCAAAAAGATTGCCCATTAAAGTAAAGGAAGCAGTCACAGCAAAAACAAACGCCAAATCGCGACATTCGAAAGAAGTGCCTCAGGGTGATCAGGAGCAGATAAGCGCGCTAATACGCGACATTCTAGACGATGAGGAGTTGCCAGCCGATGACAAGTTTGTGGAAGCCACAGCTACATTATGTCAGCTGGAAAAACAGACACCTGAAGTGCAGCAGCAGTCGAAGAAGAAACCTAGTAAAGTGGTAGAACAAAAAGTGTTGGAGGAGGAGGACAATAATGAGCTGGAATTTTTGGTTGAGCGGGAAGATAACTCCTCGGAACTAGGTGTTCGCCACTTCAAAGTTGAGCAAAAAATTAAACGCGCCACGTCGCAGTCGCAAAATGAAAGCCAAAGCGAGGATGAATCCTTTAAAGTGGAACCATTCAACTTTGTGCTTATCAAGGAATCTGATAACATTGGAGATTTGTACGAGTATTTGGGCACAGTGGTGAAGACTTGTTTCGAGTCTTTGACTTTCGACTGGGACACTGTTTGCCGACATTGCTCGCTGAAGTGCAGCACTTATGAAAGTCTATTTAATCACATGCTGAAGCGGCATGAGTCGGCGAACGAGATTTACAAGTGCCCCATTGATGAGTGCACGACAGAGCTGCAAGGTGGCAAGTCTTTGGCCATGCATTTGGTTGTGCTGCATGCGCCGGTTGCTGATATACCCATTTATGGCAGTTGTCCCGAATGCAACATGACCTTTTCAAACATACTGCAGTACAACAAACACTCTTGCGCGCATGTCATTAAAAAACGACGTGGCATACGCCTTTATTGTGAAATGTGCGGCTTGGAGTTTCCATCCTGGAAGCGCTTTAATTTTCACAATCAATTTCACTTGGAGCGCCACAGACCGCGCGCATGCTTTGTTTGCAGCTATTCGGATACAAATATCGATGAGCTATTTCATCATTTGAACTATGCCCATGAACCAGAAGGCACCCTCTTTTGTGATCTATGTGATCGCAATTTTCGTGATCATGCTATCTTTATGGAGCACAACAAATCGCACTCCAATGTCAGCAGCACTACCTACACGTGCGTCGAATGCAGCGCTAATTTTGAGACACGCGGTCGCCTCAACGGTCATATGCGTGCCGCACATGGAAGTGTCATTAGCTGCGGGCTGTGTGGCCGTGAGTTTGCCGCGGAGGCCACTTACAATATACATATGAAAACCCATCTGATTATTGAACGCGAAGTGCATGTGTGCAACAGTTGCGGCTTGCTCAGCGAAAGCAACGAAAAGATGGTGTCTCATGTATCGGATGATGATTCGGGTTGCTTTGGTAGCGATGTTTTAGTGGAGATGATGCGTGATGCTTATGTTTGTGAATACTGCTCGGCCTACTTTAAGCAAAAAAGCGATTTGCGTGCTCATCGCGATTCGGGGGTTCATAAGAGTGGCATCTTCTGGTGTCAGCCTTGCAACAAGGAATTTACCGACATGAAACTATATCGTCACCATTTGCGCAACTATCAGCAAATGCGAACAGATGTTGCGCATCGCAATCTCGAAATATGTCTTTACTACATGTGCGACTTTGAGTTTTGCGATGAGGCATATATCAATTGGAATTCCTTATACACTCACAAACGGCGCACGCACGATGCCGTCGAGAAGCTGGAACCTAAGACAAAAGAAAATGACTGGATCTGTCAGTTTTGTCAGAAAGTGTGCCGCTCTAAAATGTCGCTCTCAGTTCACGTGGCACGCAGTCACAACAATAATAATATAGTTTGCCCACTGTGCAAAGCTTCTTATAAAGATGATGAGGCTCTTAAGAAACATCACGCCTATTGGCACGAGCCAATGGAGTGTCCTTTGTGCTTAAAAGTTGTCAAGAATCGTCGCAACTATGACACACACATGAATGTGGTGCACTCAAACAATAAGCGCTACTCATGTAGTGAGTGTCAAAAAGGATTCTACCACAAGAGCGAAATGGAGGCGCATCGGCGGTTACATGCCGAGTCGTTAAAATGTGATCAATGTAACTTTACGACGAGAAACGAAAAATCGCTGTCCGTTCATGTTATGGGACAGCACTACAAGCGGTTTGCTTTCGAGTGCAAGCAATGCAAAAAGCGTTTTGGACGTCGCCAAGGACTCTCGAATCATATGCAGCGTGTGCATGGTTGCAAATATATTTGTCGTGACTTTTTTAAGGGCGGCTGCAGCAAATCTTTTGCATCAACTACCCGGCTGAACGTGCATGTGCGTAAGACACATAGCAGCAAAATTTATCTGCCCGAAGATCAAGTTGTCAAGGTGGAGGAGGATATAACAAGTAATGGTCCATCGACATCAAAAAAACGTTCCATACGCCTCAATGCAAACACTCAAATTGAGTTTATTGGCGATGCGGCTGATGGCGAGGATAACGCGAGTCAGACTAGTTCGATCACGTTCGAGGAGTATCGGGAGATTAAGAAAGAAGCAAAAGAACCACCAAAAAAGAAACAGAAGAAAAGTCAATAG
- Protein Sequence
- MSESVKNTKSVPSCLHCRACNSKQQYQEIFDKVGIEIDLAKLVAKYFKIIVKPDAKKPQQLCGECVNNLIRSFDIDEHKKKKDASNAAKKNNHKNAKIVTPVPPARPAAAKIGVAISAKKRTAVPNTTQIHTNVSAAASTKQAKLTPXXXXXXXXXXXXXXXXSQEPVDIRITRARNAPPKRLPIKVKEAVTAKTNAKSRHSKEVPQGDQEQISALIRDILDDEELPADDKFVEATATLCQLEKQTPEVQQQSKKKPSKVVEQKVLEEEDNNELEFLVEREDNSSELGVRHFKVEQKIKRATSQSQNESQSEDESFKVEPFNFVLIKESDNIGDLYEYLGTVVKTCFESLTFDWDTVCRHCSLKCSTYESLFNHMLKRHESANEIYKCPIDECTTELQGGKSLAMHLVVLHAPVADIPIYGSCPECNMTFSNILQYNKHSCAHVIKKRRGIRLYCEMCGLEFPSWKRFNFHNQFHLERHRPRACFVCSYSDTNIDELFHHLNYAHEPEGTLFCDLCDRNFRDHAIFMEHNKSHSNVSSTTYTCVECSANFETRGRLNGHMRAAHGSVISCGLCGREFAAEATYNIHMKTHLIIEREVHVCNSCGLLSESNEKMVSHVSDDDSGCFGSDVLVEMMRDAYVCEYCSAYFKQKSDLRAHRDSGVHKSGIFWCQPCNKEFTDMKLYRHHLRNYQQMRTDVAHRNLEICLYYMCDFEFCDEAYINWNSLYTHKRRTHDAVEKLEPKTKENDWICQFCQKVCRSKMSLSVHVARSHNNNNIVCPLCKASYKDDEALKKHHAYWHEPMECPLCLKVVKNRRNYDTHMNVVHSNNKRYSCSECQKGFYHKSEMEAHRRLHAESLKCDQCNFTTRNEKSLSVHVMGQHYKRFAFECKQCKKRFGRRQGLSNHMQRVHGCKYICRDFFKGGCSKSFASTTRLNVHVRKTHSSKIYLPEDQVVKVEEDITSNGPSTSKKRSIRLNANTQIEFIGDAADGEDNASQTSSITFEEYREIKKEAKEPPKKKQKKSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01320620;
- 90% Identity
- -
- 80% Identity
- -