Sgra013431.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scaptomyza graminum
Gene Symbol
-
Assembly
GCA_018901835.1
Location
JAEIFL010000002.1:7666241-7672498[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.8e-05 0.0011 19.0 2.1 1 23 262 284 262 284 0.97
2 18 5.8e-06 0.00038 20.5 0.4 1 23 290 312 290 312 0.97
3 18 0.00085 0.055 13.7 0.9 1 23 318 340 318 340 0.95
4 18 1.2e-05 0.00079 19.5 3.1 1 23 346 368 346 368 0.97
5 18 2.8e-05 0.0018 18.4 4.7 1 23 374 396 374 396 0.99
6 18 5.1e-05 0.0033 17.6 5.7 1 23 402 424 402 424 0.97
7 18 2.5e-07 1.6e-05 24.8 4.3 1 23 430 452 430 452 0.98
8 18 8.9e-08 5.8e-06 26.2 2.4 1 23 458 480 458 480 0.97
9 18 5.2e-05 0.0034 17.5 6.7 1 23 487 509 487 509 0.97
10 18 9.1e-05 0.0059 16.8 6.5 1 23 515 537 515 537 0.98
11 18 8.1e-06 0.00052 20.1 4.5 1 23 543 565 543 565 0.98
12 18 5.9e-06 0.00038 20.5 8.1 1 23 571 593 571 593 0.98
13 18 4.8e-06 0.00031 20.8 7.6 1 23 599 621 599 621 0.97
14 18 5.3e-07 3.5e-05 23.8 7.7 1 23 627 649 627 649 0.98
15 18 0.00017 0.011 16.0 9.5 1 23 655 678 655 678 0.95
16 18 5.9e-05 0.0038 17.4 0.9 1 23 684 706 684 706 0.98
17 18 0.001 0.065 13.5 4.4 1 23 716 738 716 738 0.98
18 18 7.4e-06 0.00048 20.2 1.6 1 23 744 767 744 767 0.96

Sequence Information

Coding Sequence
ATGCAGCACGTGAGCGCTGCCAGTTCGGCACCTTCGGTGGTCTCAGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCACCTTGGGCGGAGCACCGCCGTCATTGTCCAGTGGCAAACATTCGTCAGAGCACCATAAAGAGGACGGCAGCAAGCCGCCGCATCACGGCATTGAAATGTATAAAGTAAACATTGAGGATATTTCACAGTTATTTACGTATCACGAGGTCTTTGGCAAAATCCATGGCGATGTGGTTAATCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGACCACAACCAGCTCGGGCAGCAACGGGGGCAATAACAACTCGACAACGACGACGGGTGAGTTGCTAATGCCGAAAATGGAGGGCGGCATCCATGGCGTCGATGGGCAGTCGAGCGTTGCGTTGGCGCCGGATGGCACACCCATTGCGACTGGTACGCATGTGTGCGACATTTGTGGCAAGATGTTTCAGTTTCGCTATCAGCTGATTGTGCACCGCCGCTACCACAGCGAGCGCAAGCCGTTCATGTGTCAGGTGTGCGGTCAGGGTTTTACCACATCGCAGGATTTGACCCGTCATGGCAAAATACACATTGGCGGTCCCATGTTCACATGCATTGTGTGCTTCAATGTGTTTGCCAATAATACAAGCTTGGAGCGCCATATGAAACGGCATTCAACGGACAAGCCATTCGCCTGCACCATTTGCCAAAAGACTTTCGCACGCAAAGAGCATCTGGACAATCATTTTCGTTCGCATACCGGCGAAACGCCGTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTCTGCGGCAAGAAATACACGCGCAAGGAGCATCTAGCCAACCATATGCGCTCCCACACCAACGAGACGCCGTTCCGTTGCGAAATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTTACGCGCAAGGAGCATTTGTTAAATCACGTGCGCCAGCACACTGGAGAGTCACCGCATCGCTGCTCCTACTGCATGAAGACGTTCACACGCAAGGAGCATCTGGTGAATCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTTACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACATATTGCACCAAGACGTTTACACGCAAGGAGCATCTAACGAATCATGTGCGCCAGCACACGGGCGATTCGCCCCATCGCTGTAGCTACTGCAAGAAGACCTTCACCCGCAAGGAGCATCTGACGAATCATGTGCGCCTGCACACGGGGGACTCGCCGCACAAATGCGAATACTGTCAGAAGACGTTTACGCGCAAGGAGCATCTCAATAATCATATGCGTCAGCACTCCAGCGACAATCCGCATTGTTGCAATGTGTGCAACAAGCCCTTCACACGCAAGGAGCATCTGATTAATCATATGTCACGCTGCCACACCGGTGATCGTCCCTTCACCTGTGAGACATGCGGCAAATCTTTTCCCCTTAAGGGCAATCTGTTGTTCCATCAGCGTAGCCACACCAAGGGTCAGGAGTGCGAGCGTCCGTTTAACTGCGAGAAATGTCCCAAGAATTTCATATGCAAAGGTCACTTGGTTTCGCACATGCGCTCCCATTCGGGTGAGAAACCGCACGCGTGCACACTGTGCAGCAAGGCTTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCATCCGGATGCTATGATGCCGCCACCACCTGTGCATCCGCATCCGCAAATACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCATCACTCGGCGACCACCACAATGCACACCATTCAGCAAATAACAGCGGGCGCAGCGGCAGCTGGCGCCGGTGCCGTCCAGTTAGCGCCAGGTTTGCATCCTGTTGTTTACTAA
Protein Sequence
MQHVSAASSAPSVVSAPVVTTGGGTTITLGGAPPSLSSGKHSSEHHKEDGSKPPHHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTTTSSGSNGGNNNSTTTTGELLMPKMEGGIHGVDGQSSVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFNCEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAAAGAGAVQLAPGLHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00478871;
90% Identity
iTF_00553170;
80% Identity
-