Sgra002676.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scaptomyza graminum
Gene Symbol
lov
Assembly
GCA_018901835.1
Location
JAEIFL010000132.1:18209616-18219711[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.9e-19 1.7e-15 56.2 0.0 1 44 882 925 882 926 0.96

Sequence Information

Coding Sequence
ATGTTAAAGGACGCCGAGGAGCTGATAAAACGCTGCAAACTGACGTCATTGCCGCTGGCGTTGCATATGAACGATTACGGCCGCCAGGTTGTGCCAGCGCTGCCGCTGCCGCTGCCGCTCCTCGCAAAGCCGCCAACAACAACGATGGCAGCAACTGAAATTGGCATTGGAGCTGATCTCTCGCATCATCTGCATACGCATCATCATCAGCTGACGCCCTCGTCGCATGCCAGCCACGCCCATGCATCGATGCACACGACACCGCCCACAACGCCGCCCACGCCGCCACCGCTGCCGCTAAACATGAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACACAGTCCACCTGCCACACCCACTGCGGTCAGCGCACCCACGCAGGATCATTATAGTCTGCGCTGGAACAACCATCAGAATCACATCCTGCGCGCCTTCGACGCCCTGCTGCAGACTAAGACCCTTGTGGATGTGACCCTGGTCTGTGCTGAAACATCGATACGCGCCCACAAAATGGTCCTCTCCGCCTGTTCGCCCTTCTTTCAGCGCGTCTTTGCCGAGACGCCCTGCAAGCATCCTGTCATTGTGCTAAAGGACTTTCGTGGTTGGGTAGTGCAGGCAATTGTGGATTTTATGTATCGCGGCGAAATTAGCGTACCCCAACAGCGTCTCCAAACTCTAATCCAGGCGGGAGAGTCACTGCAGGTGCGCGGCTTGGTGGAGAGTTCTGTTCCGGAACACACTCCCACTCCAGCTGCCTCACCCGACGATTTTAATCTGCTGGACGCCTCGCTACTTTCGTCCAGCTTCGAGGATGAGTCGCCCTCGATGGTCAGACCCTCAACTGGCAAGCTGATGATGCCCTCGAGATTCTTTGGTAACCCTTCTAGCGCGATGGCGGTGTTAAGTATGCGACGCAAGCGAGAGCAGGAATGCGAACGGGAACTGGAGAGCGATCAGGAGCTTGGAGGTAGCTCACCCATGCCTCGGCGTAAGCAAGCGCGTCCCAGGCGAAGATCGGGTGATGTGCCTCACGACTTTGCGCTAAGTAAGCCAGAAACGGAGACACTCCAAACTGTGATCAAACATGAGCTGCAGGATGAGCAGGAACCGGAGCAGAGCGATAAGCAGCGATCCGAAAGAGAGGAAGAGAGTAATCCCATGGAACTAGATGATCAGCAGTCACAGGAAAATAACGAGAACGAAGAGCGAGTTGCAAACGAAGTTGACGTGACTGATCGGACGGACCGCAGGGATCAACAGCAACAGGAGCACGCTTTACCCCTCATCACTCCTTGCAACCAGAGCAATCAGCAGATGGAGCAGGAACTGGATGAAGAGGACGATGAGGATGATAGAGAGCCAGAGCATGATCAGGAGCAAGAAAACGATCTTGATCAAGAAGAGCCCGGTCATGATATCGATCACGATCCGGACGACGACGAAGAGGAACAAGACATTGAAGAGCTTATACATACGACCAACGAACTGCGGCGTCAAGCGGCAGTCGCTGCTGCCAATGCGGCAGCAATGTCACCCTGTCCCAGTGATGGGCCCGAGGATCTGTGCACCACCAAGAAGGATAAGGACACAAGTAACTCGCACTCTTCCGATAACGAGAGCAACAACAACAATAGCAGTAAACTGCAGGACAACAATCAACGCATCATGTTGTCACTGAAGGACATTCGGCAGCTAAATGCCAAGCCCAGTGCCACCTCAACGCCCACCCACACGCCCAACAGCTGTGCGCCAGGGAACAATGGTATGTTGTCATTTCCCCCACCCGGCTTGCGTCCGCCCGGCCTAAACGACAGTCCACCCTGCCACATGGAGGCTCTCGAAGCGCAAATGCATGCTGCGGCCGCTGCCGCAGTGGCGGCTGCAGGTGCCGGCGAGAATCCCTTCCATCATATGGAGCATCAAATGGAAATGTCGCTAGCGGCAGCAGCTGCAGCAGCAGCCATGCATCAACGGGATCCCCGGGACCACAGAGAAACCCGAGAGCAAGCGATGCAGAGGGAGCACAATGCGTTCGCCAGTAATCTTTTGGGTCCGATGGGTCTGCCACCATTCCATGGACACAATGGCTCCATGCCGGGCGGCGGATGTCCGGGTCAGGCGCCGCATGAGCGGCTCGAGGAGAGCATGAATCGTCTGAGCAAAGAGTTTGGCAAAGAGTTTGGCAAGGAGTTCGGCAAGGACTTCGGCAAGGATTTTGGCAAGGACTTTGGCAAAGACTTCTGCAAAGATTTTGCGCCAACATCGCCAATGAGCCTACCCGGTCACTACAATCCGCAGGACGGACACCAACATCCGCCGTCACCGCTGCCCTTTCCTGGTATGTCCTCAGCGTTGACGCTGACACCACCACACATGTTTGGTTTGGACTCGCCACTTGGCTTATTTCCGCCCGGCATGGATCCTGGCAAACTTTATAATCCGCTAATGGAAATGAGCGATCCACGCGATATGCCCGGCGGACCGCCACCGTTTCTCAAAAAGAAAATGCCACGCCCCAAGGGACAGCATTCGGCGCCACGAGGAGGTCCACCACGGTCGTGGACAAACACAGAGCTAACAGAGGCACTGCAGCATGTGTGGAACAAGAAGATGACCACGTCGCAGGCATCGCGTATCTTTGGAATACCATACAACTCCCTGCTGATGTATGTGAGGGGGAAGTATGGGAAGAGTCTGAAGCTGGAGCAGTTGCGCAAGGATTGCATTAGTGGACCACCGATTGAGATGCTTCAGATGGGCATCAGTGGCGGTGGTGGAGGCGGTGGCTCCAAGAGCGAGAAAAAGGAGCGCAAGGAGAAGGACAAGGAGAAGAATTCCTCATCCAACAACTCCAGCTCGAACAACAACAACAATAGCTCTGGCGGCTGCGGCAATCCCAATTCATCCCAAATGCCACATCCCAGCGATTTGGGCTCATTGGGTCCACTCGATTTGGAGCTGGGATTGCCGCTGGGTCCACCCGCCGGACCACGCAGTGGAAGCTCAGAGCCGGATATGCTTGGAGGGCCTGGAGCACTCTTCAATCCCTTCAATCCACAGGGCTTCTATCCGGACTTTGCTGGCGGTTTTCCCGGACTTCCGCTCAGCATGCTGAATCTTCTGCCGCCGTCGGAGCGTCACCATGCCGCCGTGGCCATGCATCATCTGGGTGTCAGCATGGATGAAGACTGCAAGTCCGTTGGCTCCAAGCAATCCTCCTCCCTGGACGATGACTTCACAGGTCTTCCACTCTCCCTCGAACAGCGACGGCACGGTGAACTCTCGAGCAATGGAGCGCCGACGTTGGCCCAGGCGAATGGTGCGGCCCAGGATTGA
Protein Sequence
MLKDAEELIKRCKLTSLPLALHMNDYGRQVVPALPLPLPLLAKPPTTTMAATEIGIGADLSHHLHTHHHQLTPSSHASHAHASMHTTPPTTPPTPPPLPLNMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPHSPPATPTAVSAPTQDHYSLRWNNHQNHILRAFDALLQTKTLVDVTLVCAETSIRAHKMVLSACSPFFQRVFAETPCKHPVIVLKDFRGWVVQAIVDFMYRGEISVPQQRLQTLIQAGESLQVRGLVESSVPEHTPTPAASPDDFNLLDASLLSSSFEDESPSMVRPSTGKLMMPSRFFGNPSSAMAVLSMRRKREQECERELESDQELGGSSPMPRRKQARPRRRSGDVPHDFALSKPETETLQTVIKHELQDEQEPEQSDKQRSEREEESNPMELDDQQSQENNENEERVANEVDVTDRTDRRDQQQQEHALPLITPCNQSNQQMEQELDEEDDEDDREPEHDQEQENDLDQEEPGHDIDHDPDDDEEEQDIEELIHTTNELRRQAAVAAANAAAMSPCPSDGPEDLCTTKKDKDTSNSHSSDNESNNNNSSKLQDNNQRIMLSLKDIRQLNAKPSATSTPTHTPNSCAPGNNGMLSFPPPGLRPPGLNDSPPCHMEALEAQMHAAAAAAVAAAGAGENPFHHMEHQMEMSLAAAAAAAAMHQRDPRDHRETREQAMQREHNAFASNLLGPMGLPPFHGHNGSMPGGGCPGQAPHERLEESMNRLSKEFGKEFGKEFGKDFGKDFGKDFGKDFCKDFAPTSPMSLPGHYNPQDGHQHPPSPLPFPGMSSALTLTPPHMFGLDSPLGLFPPGMDPGKLYNPLMEMSDPRDMPGGPPPFLKKKMPRPKGQHSAPRGGPPRSWTNTELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPIEMLQMGISGGGGGGGSKSEKKERKEKDKEKNSSSNNSSSNNNNNSSGGCGNPNSSQMPHPSDLGSLGPLDLELGLPLGPPAGPRSGSSEPDMLGGPGALFNPFNPQGFYPDFAGGFPGLPLSMLNLLPPSERHHAAVAMHHLGVSMDEDCKSVGSKQSSSLDDDFTGLPLSLEQRRHGELSSNGAPTLAQANGAAQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01326317;
90% Identity
iTF_01322738;
80% Identity
iTF_01322738;