Sfla013697.1
Basic Information
- Insect
- Scaptomyza flava
- Gene Symbol
- ush
- Assembly
- GCA_003952975.1
- Location
- RKRM01000460.1:93517-100439[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.059 4.5 7.8 1.0 2 21 99 118 99 119 0.92 2 13 0.058 4.4 7.8 2.9 2 21 445 464 444 465 0.93 3 13 0.011 0.81 10.1 0.0 3 21 515 533 513 534 0.91 4 13 0.0077 0.59 10.6 0.0 2 23 603 624 602 624 0.98 5 13 0.0045 0.34 11.3 1.3 1 23 630 652 630 652 0.99 6 13 0.0016 0.12 12.8 1.9 1 23 724 747 724 747 0.96 7 13 0.059 4.5 7.8 1.0 2 21 778 797 778 798 0.92 8 13 0.058 4.4 7.8 2.9 2 21 1172 1191 1171 1192 0.93 9 13 0.011 0.81 10.1 0.0 3 21 1242 1260 1240 1261 0.91 10 13 0.0077 0.59 10.6 0.0 2 23 1330 1351 1329 1351 0.98 11 13 0.0045 0.34 11.3 1.3 1 23 1357 1379 1357 1379 0.99 12 13 0.0016 0.12 12.8 1.9 1 23 1451 1474 1451 1474 0.96 13 13 0.36 27 5.3 0.7 2 20 1584 1602 1583 1604 0.91
Sequence Information
- Coding Sequence
- CTGCGTCACATGAAATTGCTGCATCCACATGTAGCTATCAGTTCGCCCTCCATATCACCCGAGTCGCGAGAACAGGAAGCAAATCCTCATGCACTGCCtgaagtagctttagttaaTGGGGAACGGGAAGCAGCCGCTTTGGGCAGCTTTCACATTAAAACGGAGCCGCTGGAGCCAGCTGTCGCCACTTTAGGTCTGGTGCATGATAACAACAATTCACCCATTGGCACACCACACACCCACATTAAAGCTGAACCCATAGAGCTGGGTGTAGATGTGTCGCAAATTGATCGCTATTGCAGTGACTGTGATATTCGCTTCAACAACATCAAGACCTATCGAGCCCATAAGCAGCATTATTGCAGCTCCCGTCGCAGTGACGGACAACTGACGCCCAAGCCAGAGGCGAGTGGCATCGCTGGTGCAGGAGCTGTAACTCCGCCGCAACCCTTCCTGGCGCTGCCCACCAATCCAATAATCATTGTGCCCTGTTCGCTTATACGCGCAGCTAGCTTAATACCGGGGCCACTcacaaCCTCCACTTCGGGCATTATGAATCCGGAATCCACGTGCTTTACACTCGACAATGGCGCTCTGAAGCCTCTTGCCACGGCTCTGAATATAAATGCTCTAGGAGgcagtgccacgcccacacctATGACTAGTAGCAATCAAATACCAATTCCCGCTCTAGAGCCAGATCGTCCAGTTGCTGTAAACAATGTAAACAACCAGGAAGCCGAACCCAAAAGCAGTCCACCAGAACCCAAACGCAAGGAAGCAACTGGAGCACGAGAGACAACACCCTTGGACTTATCGCTTCGACGCTCACCAATTTCCGCTTTATTGCAACGTCAACGTCTCGTTCGCTCTGCCGCAGCTTTGCTCGATGCTGAAGATGCTGCTGGCAAGGATCATTTGGAGAGCATTAGTGGTGGAAGTGTAACGCCCGAGCAAATTGTTTGCGCACCCTCGCTGCCCAGCAGTCCATCGATGAGTCCGTCGCCCAAGCGACGTGCTTTGAGCCCACGCAGTTCTGGAGCCGGTAGTGCTTCATCGATGTCACCGCCAGTTTCTCATCTGCTGGACAATCTGCCGCCATTGCGTTCCATGCTGCCCTCCGATTTTGCGCTCTCCGAATCGCTGCTGGCCAAAACTAACCCGGAACTGGCTTTAAAGttggcggcagcagctgcggcAGCTGTGGCAGGCAGCAGTTCAGCAGAGCTGGCCAAATTGGGATTTCCAGGAGCAGCGGCTGCAAGTTCTTCTTCTGCAGCACCACCTCCTGCACCGAATGCACCACAGATCTACGTAAAGCAGGGCGTCTCCAAGTGCAAGGAGTGCAACATAGTCTTTTGTAAATACGAAAATTATTTGGCGCACAAGCAACATTATTGCTCGGCACGCAACCAGGAGCCGGGCCTGGATGGAGATGCCTCTAAGAATGCGGTGACGCCACCTAGTGGACTCTCCTCAGGTGGTGTCAATGCAGGCGCCTCTGCTGCTGAAACTACTCCAGTTGCCTATCAGCAGCTCATTTGCGCAGCCTGTGGCATTAAATACACCTCACTCGATAATTTGCGTGCACATCAGAACTACTATTGTCCGAAAGGTGGCGCTGCTGCGGCAGCTGCTACACCAGCTGAAGCTGCACCAGCACCGCAGCTACCAGTTTCGCTTCCCAAGGAAAAGTGTTTGAAGTGCAAGACACTTCATGAGCATGGCCAAAATTGCCCTCCACCGCCGGCAACAGTACAACTGCCTGCTCCTTCCTCCATCTCTAACACCTCGAATAGCGTCAACAAGTGTCCTGTCTGTGGTGTTGTTAGTCCCACTGCTGCCCTGGCACGCAAGCACATGGAGATGCATGGCACTGTGAAGGCTTTTCGCTGCTCCATCTGTCAGTATAAGGGGAACACCTTGCGTGGCATGCGCACCCACATTCGCACACATTTCGATAAAAAGACCAGCGATGTTAATGAGGAGCATTACATGACATGCATTTTTGAGGAGGAtgtggcagctgcagcagctgccgtaGTACCTCCTCCAACTCAAGCACTGGGTCTGGATTTGCCggctgttgcagcagcagcggtggcggcagcagcagcagcagcagcggcggcggctcAAGATCAATTGGAACAGCATCCGGCACAGCTTTTCAATTGTGATCACTGCAATTATGCTTCCACATACAAGGGCAATGTGCTGCGTCACATGAAATTGCTGCATCCACATGTAGCTATCAGTTCGCCCTCCATATCACCCGAGTCGCGAGAACAGGAAGCAAATCCTCATGCACTGCCtgaaCAAATTGATCGCTATTGCAGTGACTGTGATATTCGCTTCAACAACATCAAGACCTATCGAGCCCATAAGCAGCATTATTGCAGCTCCCGTCGCAGTGACGGACAACTGACGCCCAAGCCAGAGGCGAGTGGCATCGCTGGTGCAGGAGCTGGTGGAGTTtctggagctgctgctgcagcagttgctgctgttgctgccggcAAGCACAGCCCCCAGACGCGCAACAAGACGCCAACGCCAGCAAtggtagctgctgctgctgccgccgctgctgctgcagctgcatcgTTGCAAGTAACTCCGCCGCAACCCTTCCTGGCGCTGCCCACCAATCCAATAATCATTGTGCCCTGTTCGCTTATACGCGCAGCTAGCTTAATACCGGGGCCACTcacaaCCTCCACTTCGGGCATTATGAATCCGGAATCCACGTGCTTTACACTCGACAATGGCGCTCTGAAGCCTCTTGCCACGGCTCTGAATATAAATGCTCTAGGAGgcagtgccacgcccacacctATGACTAGTAGCAATCAAATACCAATTCCCGCTCTAGAGCCAGATCGTCCAGTTGCTGTAAACAATGTAAACAACCAGGAAGCCGAACCCAAAAGCAGTCCACCAGAACCCAAACGCAAGGAAGCAACTGGAGCACGAGAGACAACACCCTTGGACTTATCGCTTCGACGCTCACCAATTTCCGCTTTATTGCAACGTCAACGTCTCGTTCGCTCTGCCGCAGCTTTGCTCGATGCTGAAGATGCTGCTGGCAAGGATCATTTGGAGAGCATTAGTGGTGGAAGTGTAACGCCCGAGCAAATTGTTTGCGCACCCTCGCTGCCCAGCAGTCCATCGATGAGTCCGTCGCCCAAGCGACGTGCTTTGAGCCCACGCAGTTCTGGAGCCGGTAGTGCTTCATCGATGTCACCGCCAGTTTCTCATCTGCTGGACAATCTGCCGCCATTGCGTTCCATGCTGCCCTCCGATTTTGCGCTCTCCGAATCGCTGCTGGCCAAAACTAACCCGGAACTGGCTTTAAAGttggcggcagcagctgcggcAGCTGTGGCAGGCAGCAGTTCAGCAGAGCTGGCCAAATTGGGATTTCCAGGAGCAGCGGCTGCAAGTTCTTCTTCTGCAGCACCACCTCCTGCACCGAATGCACCACAGATCTACGTAAAGCAGGGCGTCTCCAAGTGCAAGGAGTGCAACATAGTCTTTTGTAAATACGAAAATTATTTGGCGCACAAGCAACATTATTGCTCGGCACGCAACCAGGAGCCGGGCCTGGATGGAGATGCCTCTAAGAATGCGGTGACGCCACCTAGTGGACTCTCCTCAGGTGGTGTCAATGCAGGCGCCTCTGCTGCTGAAACTACTCCAGTTGCCTATCAGCAGCTCATTTGCGCAGCCTGTGGCATTAAATACACCTCACTCGATAATTTGCGTGCACATCAGAACTACTATTGTCCGAAAGGTGGCGCTGCTGCGGCAGCTGCTACACCAGCTGAAGCTGCACCAGCACCGCAGCTACCAGTTTCGCTTCCCAAGGAAAAGTGTTTGAAGTGCAAGACACTTCATGAGCATGGCCAAAATTGCCCTCCACCGCCGGCAACAGTACAACTGCCTGCTCCTTCCTCCATCTCTAACACCTCGAATAGCGTCAACAAGTGTCCTGTCTGTGGTGTTGTTAGTCCCACTGCTGCCCTGGCACGCAAGCACATGGAGATGCATGGCACTGTGAAGGCTTTTCGCTGCTCCATCTGTCAGTATAAGGGGAACACCTTGCGTGGCATGCGCACCCACATTCGCACACATTTCGATAAAAAGACCAGCGATGTTAATGAGGAGCATTACATGACATGCATTTTTGAGGAGGAtgtggcagctgcagcagctgccgtaGTACCTCCTCCAACTCAAGCACTGGGTCTGGATTTGCCggctgttgcagcagcagcggtggcggcagcagcagcagcagcagcggcggcggctcAAGATCAATTGGAACAGCATCCGGCACAGCTTTTCAATTGTGATCACTGCAATTATGCTTCCACATACAAGGGCAATGTGCTGCGTCACATGAAATTGCTGCATCCACATGTAGCTATCAGTTCGCCCTCCATATCACCCGAGTCGCGAGAACAGGAAGCAAATCCTCATGCACTGCCtgaagtagctttagttaaTGGGGAACGGGAAGCAGCCGCTTTGGGCAGCTTTCACATTAAAACGGAGCCGCTGGAGCCAGCTGTCGCCACTTTAGGTCTGGTGCATGATAACAACAATTCACCCATTGGCACACCACACACCCACATTAAAGCTGAACCCATAGAGCTGGGTGTAGATGTGTCGGTACCCACGCTACCACCAGCAATTGCCAACTCTCCACTTGGTCCAAGCGCTGCCGAGGCAATGAAGAAATACTGCTCCACCTGCGACATATCCTTTAACTATGTAAAGACATTTTTGGCGCACAAACAATTCTATTGCAAGAGCAAACTGCATCGGCCAGAGTCAAACGATAGCCCAAGTCCCACGGTGGGTGGGGGTGCCTCAATGCCACTGCAATCGCCGAGcgagctgctgttgctgcaaaaaaataaggaGAATCTGCAGGAGGCGGCCATTTGA
- Protein Sequence
- LRHMKLLHPHVAISSPSISPESREQEANPHALPEVALVNGEREAAALGSFHIKTEPLEPAVATLGLVHDNNNSPIGTPHTHIKAEPIELGVDVSQIDRYCSDCDIRFNNIKTYRAHKQHYCSSRRSDGQLTPKPEASGIAGAGAVTPPQPFLALPTNPIIIVPCSLIRAASLIPGPLTTSTSGIMNPESTCFTLDNGALKPLATALNINALGGSATPTPMTSSNQIPIPALEPDRPVAVNNVNNQEAEPKSSPPEPKRKEATGARETTPLDLSLRRSPISALLQRQRLVRSAAALLDAEDAAGKDHLESISGGSVTPEQIVCAPSLPSSPSMSPSPKRRALSPRSSGAGSASSMSPPVSHLLDNLPPLRSMLPSDFALSESLLAKTNPELALKLAAAAAAAVAGSSSAELAKLGFPGAAAASSSSAAPPPAPNAPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEPGLDGDASKNAVTPPSGLSSGGVNAGASAAETTPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGAAAAAATPAEAAPAPQLPVSLPKEKCLKCKTLHEHGQNCPPPPATVQLPAPSSISNTSNSVNKCPVCGVVSPTAALARKHMEMHGTVKAFRCSICQYKGNTLRGMRTHIRTHFDKKTSDVNEEHYMTCIFEEDVAAAAAAVVPPPTQALGLDLPAVAAAAVAAAAAAAAAAAQDQLEQHPAQLFNCDHCNYASTYKGNVLRHMKLLHPHVAISSPSISPESREQEANPHALPEQIDRYCSDCDIRFNNIKTYRAHKQHYCSSRRSDGQLTPKPEASGIAGAGAGGVSGAAAAAVAAVAAGKHSPQTRNKTPTPAMVAAAAAAAAAAAASLQVTPPQPFLALPTNPIIIVPCSLIRAASLIPGPLTTSTSGIMNPESTCFTLDNGALKPLATALNINALGGSATPTPMTSSNQIPIPALEPDRPVAVNNVNNQEAEPKSSPPEPKRKEATGARETTPLDLSLRRSPISALLQRQRLVRSAAALLDAEDAAGKDHLESISGGSVTPEQIVCAPSLPSSPSMSPSPKRRALSPRSSGAGSASSMSPPVSHLLDNLPPLRSMLPSDFALSESLLAKTNPELALKLAAAAAAAVAGSSSAELAKLGFPGAAAASSSSAAPPPAPNAPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEPGLDGDASKNAVTPPSGLSSGGVNAGASAAETTPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGAAAAAATPAEAAPAPQLPVSLPKEKCLKCKTLHEHGQNCPPPPATVQLPAPSSISNTSNSVNKCPVCGVVSPTAALARKHMEMHGTVKAFRCSICQYKGNTLRGMRTHIRTHFDKKTSDVNEEHYMTCIFEEDVAAAAAAVVPPPTQALGLDLPAVAAAAVAAAAAAAAAAAQDQLEQHPAQLFNCDHCNYASTYKGNVLRHMKLLHPHVAISSPSISPESREQEANPHALPEVALVNGEREAAALGSFHIKTEPLEPAVATLGLVHDNNNSPIGTPHTHIKAEPIELGVDVSVPTLPPAIANSPLGPSAAEAMKKYCSTCDISFNYVKTFLAHKQFYCKSKLHRPESNDSPSPTVGGGASMPLQSPSELLLLQKNKENLQEAAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -