Basic Information

Insect: Scaptomyza flava
Gene Symbol: ECU03_0790
Assembly: GCA_003952975.1
Location: RKRM01000552.1:48370-49716[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0004 0.03 14.6 1.2 1 23 157 180 157 180 0.98

2 9 0.00085 0.065 13.6 0.2 1 23 187 210 187 210 0.96

3 9 0.0036 0.27 11.6 0.8 1 23 217 242 217 242 0.95

4 9 9.3e-07 7.1e-05 22.9 3.0 1 23 252 275 252 275 0.98

5 9 0.0019 0.14 12.5 7.3 1 23 291 314 291 314 0.96

6 9 0.00023 0.018 15.4 2.1 1 23 324 346 324 346 0.98

7 9 1.7e-05 0.0013 19.0 0.3 2 23 352 374 351 374 0.95

8 9 1.1e-05 0.00087 19.5 3.0 1 23 380 402 380 402 0.96

9 9 1.3e-05 0.001 19.3 2.3 1 23 408 430 408 430 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0004	0.03	14.6	1.2	1	23	157	180	157	180	0.98
2	9	0.00085	0.065	13.6	0.2	1	23	187	210	187	210	0.96
3	9	0.0036	0.27	11.6	0.8	1	23	217	242	217	242	0.95
4	9	9.3e-07	7.1e-05	22.9	3.0	1	23	252	275	252	275	0.98
5	9	0.0019	0.14	12.5	7.3	1	23	291	314	291	314	0.96
6	9	0.00023	0.018	15.4	2.1	1	23	324	346	324	346	0.98
7	9	1.7e-05	0.0013	19.0	0.3	2	23	352	374	351	374	0.95
8	9	1.1e-05	0.00087	19.5	3.0	1	23	380	402	380	402	0.96
9	9	1.3e-05	0.001	19.3	2.3	1	23	408	430	408	430	0.97

Sequence Information

Coding Sequence: ATGCAAGCGTTGAATAGCAACAATTGCTTGACGTGCCTACACCAAATAGATAAGGACAACATCCACTCGACTAATATCAGCGACCCGAAGCTACAGCATCTACTTATAGAGTGTTTGGATTGGCAGCAAACAGAACTCTCTTTGGAATGTTTACCCAAGCGCCTATGTTGCTCCTGCCACGAGCTGTTGCAGCGATTTGAGAAGTTTCAACACCATGCACGCTTTTGTCGGCAGCAGCTACTGGACTTGCTAAATCGGGAGCAGTCTAAGCAGCTGCAACCTGCCGGTTTTGAGATAATCTATGAAGAGGAATCAATGCGATGTCCAGCAGGCTTGCTGCTCGCTGTGGATGTCGAGGTCGAATCAATAGACGACCGGACGCCTCCAGACCCGTTCGAGGAGGCAGTTAAGCACTCTAAGCAAGCAAAGCCATCGCGCACCAGTCTTATGAAAGttcgtaaaaatatattcaagtGCTGGCAATGCGGTCATTCCTTTGCCCGCAGACTCACCATGGACGCACATGTGCGTAAGGTGCACGAGGGCCACAAGCGTCCCTTTAAATGCGATCTATGCGACAAGGCATACATTTTTATGGGTGGCCTCTACACACACATCAAGGAGATCCATGGCACCCAGGTGCGTTCACATCGCTGCGATTATCCCGAATGCGGGCGTGTCTATGTCAGTCGCATTGCCATGCTTAAACACAAACGGCTCAAGCATAATCCGTCCGCTACACCAGCACGCAAGTATGTTTGCGAGAAGTGCGGCGCCACCTTCAATCAGACATCGAATCTCACACATCATCGTCGCAGCAAACATCCCACGCCAGCGGAGTTAGCCACAATATCCCGCAAtagcaaacaattttattgtgATATATGCCAAAAGCATTTCCATTCTCGTTACACCCTTAAATACCATCAAATGCAACAGCACACCGACGCCACAGCCCAGCAGGAACAGCACGAGTGCAAGGTGTGTGGCAAGCGCATGGCCAAGCGATTTATGCTCCTGCGACACATGCTAACCCATAGTCAAGAGAATTTACCCTGCGAACACTGCGGTCGTCTGTTTGCTCGCCGATTCGAGCTCGAATCGCACATTCGTGCCGTCCATCTGAAGCTGAAGCCATTTTCCTGCAAATATTGTGGCGAGACTTTTGCTACTCGCAAAACGTTGACACATCACGAGTACATACATACCGGGGAGAAGCCTTACGCATGCGGCATCTGTGGACAGACCTTTCGCCAGCAAACGTGCCTCAAGACTCACAGCAAAATTCATGACGACCAGACCAAATGCAACCAATACACAACGattaaagataaaaacaagagttaa
Protein Sequence: MQALNSNNCLTCLHQIDKDNIHSTNISDPKLQHLLIECLDWQQTELSLECLPKRLCCSCHELLQRFEKFQHHARFCRQQLLDLLNREQSKQLQPAGFEIIYEEESMRCPAGLLLAVDVEVESIDDRTPPDPFEEAVKHSKQAKPSRTSLMKVRKNIFKCWQCGHSFARRLTMDAHVRKVHEGHKRPFKCDLCDKAYIFMGGLYTHIKEIHGTQVRSHRCDYPECGRVYVSRIAMLKHKRLKHNPSATPARKYVCEKCGATFNQTSNLTHHRRSKHPTPAELATISRNSKQFYCDICQKHFHSRYTLKYHQMQQHTDATAQQEQHECKVCGKRMAKRFMLLRHMLTHSQENLPCEHCGRLFARRFELESHIRAVHLKLKPFSCKYCGETFATRKTLTHHEYIHTGEKPYACGICGQTFRQQTCLKTHSKIHDDQTKCNQYTTIKDKNKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01321371;
90% Identity: iTF_01324322;
80% Identity: -