Basic Information

Insect: Scaptomyza flava
Gene Symbol: prg
Assembly: GCA_003952975.1
Location: RKRM01000187.1:36758-39677[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.2 16 6.1 1.5 1 23 245 268 245 268 0.91

2 9 0.0007 0.053 13.9 0.1 1 23 274 297 274 297 0.96

3 9 4.4e-06 0.00033 20.8 0.3 1 23 303 325 303 325 0.97

4 9 9.1e-08 6.9e-06 26.1 4.3 1 23 331 353 331 353 0.98

5 9 2.4e-05 0.0018 18.5 0.6 1 23 359 381 359 381 0.98

6 9 3.5e-05 0.0027 18.0 0.3 1 23 387 409 387 409 0.98

7 9 7.2e-06 0.00055 20.1 0.9 1 23 475 497 475 497 0.96

8 9 1.7e-05 0.0013 19.0 0.2 1 23 502 525 502 525 0.91

9 9 0.16 12 6.4 2.7 1 23 529 551 529 551 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.2	16	6.1	1.5	1	23	245	268	245	268	0.91
2	9	0.0007	0.053	13.9	0.1	1	23	274	297	274	297	0.96
3	9	4.4e-06	0.00033	20.8	0.3	1	23	303	325	303	325	0.97
4	9	9.1e-08	6.9e-06	26.1	4.3	1	23	331	353	331	353	0.98
5	9	2.4e-05	0.0018	18.5	0.6	1	23	359	381	359	381	0.98
6	9	3.5e-05	0.0027	18.0	0.3	1	23	387	409	387	409	0.98
7	9	7.2e-06	0.00055	20.1	0.9	1	23	475	497	475	497	0.96
8	9	1.7e-05	0.0013	19.0	0.2	1	23	502	525	502	525	0.91
9	9	0.16	12	6.4	2.7	1	23	529	551	529	551	0.98

Sequence Information

Coding Sequence: ATGATTGATTTACAAACGCAAGGTGCAGAATCTGTAAGTAAAGATCATCATCCAGAATCAGAACGTACACCAGAATCAACGATATGTCGCATGTGCCACTCGCGCATAAAATCAACTGCAGACTCGCCCAATATTTACGAGGCGTTTGTTGATTTTGGTaaaggagaagaagaaaaaggcaaagaagaagaagaagaagaagaagtactAAAAGATAAAGACACCGAGGACGAGAAAATCTTAATAGCTGATGTTTGTCAGAGTGCTTATGGTGTCAAGTATGAACGTCACGAGTTTTTGCCAGAGCACATCTGTATGCGCTGCCTGGATATACTCAGGGACTTCAACAAGCAACGACGGTTCATGCAGCAGCGTGAGTTGCAGTTGCAGGAGGAGCTTAAAAAAGTAATTGCTGTAGATGCCAAGTATCGACCTGGCTTAAATGGCAATCCCGGTGAATTTATATTTGTCGAAGGCGAAGAGAACTGTGAAATCGTTGATGTGGATCCCGATCAATTGTGTGAGACGAGCGATGATGAATTCCTTGGCTCCGAAGGCGAAGCCGATCCAGATGACGAGGAGTGGGACGATGAGGATGAGGAAGAAGCTGCACAAAACGAAGGAGAGGCTGATCTACCGCTTGGCGTCGATGCCGCCCAAATGGCTATGATGCGGCTGCATCAAACGGTCGATGCCAGCACCATTAATGTCAATGCTCACCCAAAGAGCGCCTTTCTCTGTCAATACTGCGATTTGGCCTTTACCCTACAACAGGACTGCCAGCAGCATGAGATTACCTCCCACGACATCTCGGCACCCTACATTTGCAACTATTGTCAACTACGTTTGACAACACGTCCAGCTTTGATAGCGCACATCAAGGAGCTGCATGATGCGGAGcgtccgtatgtgtgtgcaCTGTGTAGCAAGGGATTTGTGCGACGCTCGGACTTGAAGAAGCACACTATTGTGCATACGGGCGTGCGCCCGTTCTCGTGCCACGTCTGCTCCAAGAGCTTCTCGCGCAACACCAATTTGACAAAGCATTTGCGTATTCACAGCAGTGTGAAGCCCTTCGTTTGCCAACAGTGTCCACGCTCGTTCCAGACGCCACTGGAGCTGTTGAAGCACACACGCTCCCACTCCGAAATCAAGCCTTTCCAATGCGGACGCTGCCCAGCTTCGTTTGCCCGCAAGGATAAGCTACTGATGCATCAGCAGGTGCATGTTAAACGTGACATCGAACAGAAACAAAGTCAAAGTCTGCGTATTAATATGATGCTGCCGCCGGAGCAATTGCAAGTGCAAGTCCAGCTGCCATTGCATCCCTATTTAGATGCAGATCAACAGCAGCCAACAGCTCAAATTCCatatcagcagcaacagcccaAGATGAAACCAGCGCCAAAGCCCACGCGCAATTTCCGCTGCGATGTGTGTGATCGGAGTTTCCAGCGAGAAAGAGATTTGCAACGCCATCGTGCCTTGCACATGGACACACTATTCGCCTGCAAGTTGTGCGGCCAAGGATTCAATCGTCGCGAGCAACTGCAACGTCACGAGCTGGAGGCTCACGGACCCAGCTATACTTGTGCCATCTGCTGCATTACTTTTCTGCACCAGACGGAGCTGGAGACGCATCTCAAAGTGCACGAGCTGCATCATAGTGTGGCCAAGAGCACCCAGGAGGCTTTAATAGCTGCCACCGCAATTGTACCGCCTCATCCTCCCATGGCCGTGCAAGCGGGTGCTCCCATGCCAGTCAACGTTCAGGAACCAGTTCCGCTGCCCAACATAAGGCCATCCGCTGCTGAATTGTCATTCTATAGCAACATGATACCCACAATGAATCTGGGCTTCTACAGTGAAACGCGTCCCGAGGAGCGCAATGGAGCTTAA
Protein Sequence: MIDLQTQGAESVSKDHHPESERTPESTICRMCHSRIKSTADSPNIYEAFVDFGKGEEEKGKEEEEEEEVLKDKDTEDEKILIADVCQSAYGVKYERHEFLPEHICMRCLDILRDFNKQRRFMQQRELQLQEELKKVIAVDAKYRPGLNGNPGEFIFVEGEENCEIVDVDPDQLCETSDDEFLGSEGEADPDDEEWDDEDEEEAAQNEGEADLPLGVDAAQMAMMRLHQTVDASTINVNAHPKSAFLCQYCDLAFTLQQDCQQHEITSHDISAPYICNYCQLRLTTRPALIAHIKELHDAERPYVCALCSKGFVRRSDLKKHTIVHTGVRPFSCHVCSKSFSRNTNLTKHLRIHSSVKPFVCQQCPRSFQTPLELLKHTRSHSEIKPFQCGRCPASFARKDKLLMHQQVHVKRDIEQKQSQSLRINMMLPPEQLQVQVQLPLHPYLDADQQQPTAQIPYQQQQPKMKPAPKPTRNFRCDVCDRSFQRERDLQRHRALHMDTLFACKLCGQGFNRREQLQRHELEAHGPSYTCAICCITFLHQTELETHLKVHELHHSVAKSTQEALIAATAIVPPHPPMAVQAGAPMPVNVQEPVPLPNIRPSAAELSFYSNMIPTMNLGFYSETRPEERNGA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01327312;
90% Identity: iTF_01324305;
80% Identity: -