Basic Information

Insect: Scaptomyza flava
Gene Symbol: -
Assembly: GCA_003952975.1
Location: RKRM01000386.1:70539-72446[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.23 1.5e+02 2.4 0.2 12 29 48 65 43 82 0.80

2 11 0.069 45 4.0 0.2 18 38 82 99 69 107 0.83

3 11 0.086 56 3.7 6.5 18 43 110 132 99 133 0.77

4 11 0.82 5.3e+02 0.6 0.6 14 26 162 174 157 184 0.82

5 11 5.8 3.8e+03 -2.1 0.2 8 22 185 198 178 205 0.73

6 11 0.08 52 3.8 2.0 6 43 211 244 206 245 0.70

7 11 0.003 2 8.4 0.3 19 44 313 335 311 335 0.87

8 11 1.5e-05 0.01 15.7 3.1 12 44 344 373 338 373 0.91

9 11 0.0026 1.7 8.6 2.4 15 43 380 405 376 406 0.89

10 11 0.00068 0.44 10.5 0.9 12 44 427 456 419 456 0.84

11 11 0.015 10 6.1 0.1 18 39 473 491 466 496 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.23	1.5e+02	2.4	0.2	12	29	48	65	43	82	0.80
2	11	0.069	45	4.0	0.2	18	38	82	99	69	107	0.83
3	11	0.086	56	3.7	6.5	18	43	110	132	99	133	0.77
4	11	0.82	5.3e+02	0.6	0.6	14	26	162	174	157	184	0.82
5	11	5.8	3.8e+03	-2.1	0.2	8	22	185	198	178	205	0.73
6	11	0.08	52	3.8	2.0	6	43	211	244	206	245	0.70
7	11	0.003	2	8.4	0.3	19	44	313	335	311	335	0.87
8	11	1.5e-05	0.01	15.7	3.1	12	44	344	373	338	373	0.91
9	11	0.0026	1.7	8.6	2.4	15	43	380	405	376	406	0.89
10	11	0.00068	0.44	10.5	0.9	12	44	427	456	419	456	0.84
11	11	0.015	10	6.1	0.1	18	39	473	491	466	496	0.77

Sequence Information

Coding Sequence: ATGAGTGCAAAATTCGACGAGTCCTACGAAGAAATCAAGCAGGAGCTTCAAGAAGTGACGATAGATTCCGATTTGAAGGACGCTTGCGAAAGGAAGGTtggcttaaataaaaaatcaaatgaagcAGCGGGGAATCAAACGGCTAAAAAGAATCTCAACCAGTGTCCATACTGTCCGCGAACTTTTGTAACAAGCCGCGATCTTAAAATACACCAACATGTACACACCGAGCAGTTAGGTTACCATTGCGGCTATTGTCCGAGCATTTTTTCAGATAAATCCAATTTCACAACACATGTGTTGGCACATACGAAAACCTTCCCTTTCAAGTGCAACAAATGCTTGAAGAGATACCTCCATGCCAGCGAACTCAAAAGGCATCTCGAGTCGCATCATGAGTCTGATGTCGAATGGAATAAAGTAAAGCCGGTGTACACATGCCTCGTATGTCAAGGAAGCTGCAACTGTGCCACGATTAAACGCAAAGAACCAATACAGTGTAAAAAGTGTGCTCGCACCTTTGTCGATGTCTTCGAACTCAAGATTCACATGAAAATTCATACCGATCAGCTAACCTACAAGTGTCCCTATTGCCCTTTAAGCTTTGCCCACAAATCTATCATTGTCTCGCATATGTACGAGCATACAAAGTATTATCCATACAGATGCAATTATTGTAGGCTATCATATAAGCAACAAGGCGAGCTAAATAAACACATGCTTGAAAAACACCAATTGACCCCTAAAATTAACCGCAAAGCTAATAAACAGATGGAAACTACAGATTTACGTAGTGCAAAAAAGGAGCAGGAGACAAACTTGCATACCTCAAAGCTTACTCCAAGTAACCATAACAATAACGAGATGAAAACTAAGATGGAAGTAGAACAACCATCCTTGCCCATTGAGGAGCGTGCAGGAGTTATACCACACATGTGCATATATTGTATGAAAAAGTTTAGCTTCAAAAGCGATCTATTTATGCACGTGCGCGATGTACATCCAAAGACAGAAACTACTATAGCTAACCACAAGGACAATAAgcacaaatgcatttattgtGCAGAAGAATACAGATATCGATCTCAGCTATTTAGACACTTACGTGACAAACACAATGAGCTCACAAATTtgataacaattaataaatgcaACTATTGTCCGAAAGAATATAGGTCTCTCAAACAATTACGAAAACACGTGAGTGATAAACATCATCAGCTCTTAAAATCGGCTACAAGTGAAGTTCTTAGTGAGCACAAAGAGTCGGAGGAGCATAcagaaaatacattttacGTATGCATTCATTGTTCGAAAGAATTTAATGATCAAAGCGAACTGTTACAACATGTGCATGATACGCATCCTTTGACTTCAGAATCGACTACAAATAACAAGAAAGAACCTTTATCCCGCATATGCGTCTATTGTTCGAAAGAATTTAGCAACAGTAGGACACTATATGAACATGTGCTTGCTGAACATCCTTCATATGCTAGTTGTGACAAAGAGGAGCTTAAAGAAGTGGAGGTACTAAGCGAACCTATTTTAGACATCTCTTGCGTAGAAGAAACTGTTAATGCTGATCCGTTGTATGTGGATTCTCCCACTTCAATTCACaacgaagaaaaaaagaatgcAAAGAGAAGTTCAAAGAAAGTCAAGGCTTCAATAAAGTTTcttgaagatgatgatgatgttgaactcgagccaaaacaaatcaaacttCAAAAATCACCTAAGGACAAACAGTAA
Protein Sequence: MSAKFDESYEEIKQELQEVTIDSDLKDACERKVGLNKKSNEAAGNQTAKKNLNQCPYCPRTFVTSRDLKIHQHVHTEQLGYHCGYCPSIFSDKSNFTTHVLAHTKTFPFKCNKCLKRYLHASELKRHLESHHESDVEWNKVKPVYTCLVCQGSCNCATIKRKEPIQCKKCARTFVDVFELKIHMKIHTDQLTYKCPYCPLSFAHKSIIVSHMYEHTKYYPYRCNYCRLSYKQQGELNKHMLEKHQLTPKINRKANKQMETTDLRSAKKEQETNLHTSKLTPSNHNNNEMKTKMEVEQPSLPIEERAGVIPHMCIYCMKKFSFKSDLFMHVRDVHPKTETTIANHKDNKHKCIYCAEEYRYRSQLFRHLRDKHNELTNLITINKCNYCPKEYRSLKQLRKHVSDKHHQLLKSATSEVLSEHKESEEHTENTFYVCIHCSKEFNDQSELLQHVHDTHPLTSESTTNNKKEPLSRICVYCSKEFSNSRTLYEHVLAEHPSYASCDKEELKEVEVLSEPILDISCVEETVNADPLYVDSPTSIHNEEKKNAKRSSKKVKASIKFLEDDDDVELEPKQIKLQKSPKDKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01322112;
90% Identity: iTF_01322112;
80% Identity: iTF_01322112;