Scyr004171.1
Basic Information
- Insect
- Scaptomyza cyrtandrae
- Gene Symbol
- nfxl1
- Assembly
- GCA_035044605.1
- Location
- JAWNNS010000473.1:2729891-2732965[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2 1.9e+04 -8.1 6.4 15 19 148 152 147 152 0.82 2 19 0.087 8.2e+02 0.2 0.4 4 10 183 189 182 189 0.96 3 19 6.5e-08 0.00061 19.8 15.5 1 18 197 213 197 214 0.98 4 19 1 9.8e+03 -3.2 2.7 6 10 240 244 239 244 0.89 5 19 9.7e-08 0.00091 19.3 17.0 1 19 250 269 250 269 0.98 6 19 1.2 1.1e+04 -3.4 0.9 5 10 293 298 293 298 0.92 7 19 1.4e-07 0.0013 18.7 14.3 1 19 304 323 304 323 0.96 8 19 0.89 8.4e+03 -3.0 0.5 1 7 347 352 346 354 0.49 9 19 4.3e-06 0.041 14.0 13.6 1 18 357 374 357 375 0.96 10 19 0.7 6.6e+03 -2.7 0.4 1 5 384 388 384 393 0.73 11 19 0.022 2.1e+02 2.2 15.9 1 18 409 426 409 427 0.94 12 19 3.3e-08 0.00032 20.7 14.7 1 19 436 454 430 454 0.90 13 19 0.37 3.5e+03 -1.8 1.1 6 10 482 486 481 486 0.92 14 19 6.9e-05 0.65 10.1 9.5 9 19 499 509 497 509 0.91 15 19 0.027 2.6e+02 1.8 5.7 1 11 521 530 521 531 0.95 16 19 1e-05 0.098 12.8 3.1 1 11 596 606 596 607 0.96 17 19 0.27 2.5e+03 -1.3 18.0 3 19 636 652 635 652 0.91 18 19 1.6 1.6e+04 -3.8 1.4 8 13 657 662 656 662 0.73 19 19 6.8e-07 0.0064 16.6 11.8 1 16 703 717 703 723 0.90
Sequence Information
- Coding Sequence
- ATGGAAAAGTTTAATAAAGCGCAGGAAAAGAATTTGGCAGCTGCAAAGAAGCTTGTAGATGCGTATGCATCAAGTTCGGAGGATGAAGGCGAACTGGATGAAAAACATATACTCGATCAACTATACAAGCATTATAAATCTTCGCCGGATAACTCGAGTGACAGCAATAATGCGAATCGTACAGCTACTTTTTTGGAAAACACTCTTCACTCGGGTGCGGCGACCTGTCTGATTTGTATTGGCAGCATCCGACGTGTGGAGGGCATTTGGTCCTGCAAATTCTGCTACTGTTTCTTCCATCTCAAGTGCATCCAGCGCTGGGCAAATGATAGCGTCATGCAAATGAAAGTCAAGGCAGAACAGCAAACTGGCAGCCAGGGACACTACAATCATCTGGGCGAGTTTGTGCCACCAAAGCGTCCGAAATCGTTACACTGGTGCTGTCCACAATGCCGTACGGACTACCAGCCCATCGATCGGCCCACCCAATATGAATGTTTCTGCGGCAAAGAGGTGAATCCAGAGGCACAGCCCTTTCTAGTGCCACACTCCTGCGGCGAGCTCTGTGGCAAACTACTGCAGCCTAAATGTGGCCATGACTGCAAGCTGCTTTGTCATCCGGGTCCGTGTCCCCCATGCGCCCAACTGGCACATAGTTCCTGTCTATGTGGCAAATCTCCGACACGCTCGGTACGCTGCATCGACAAGAATTGGCAGTGCCAGCAAACGTGTCAATCTTTATTGTCCTGTGGCAAGCATAAATGCAACCAAAGATGCCATCGTCCTGGCCAGTGTCCGCCGTGCAGTAGCAAAAGTTCCCAATTCTGTGATTGCAAACGTGAGCAAAAAGTTATCAACTGCGCGGACCCCAAATGGAAgtgtaaaaatATTTGTGCCGCTTTATTTGATTGCGGTCTGCATAACTGCGATAAAGTGTGCCATGCTGGTCCCTGTGGCGGTGAATGTCCCTTAGGTGTCCGCAGTTGCCCATGTGGCAACAGCATAAGAACTGGAGGCTGCAGCGAAGTGCTGGAAACATGTGGCGACACCTGCCAGAAGCTATTGTCCTGTGGCAAACATAGCTGTGCCCAACGCTGCCACCGCGGTCATTGCAACCTAtgccTGGTGCGCACTAAGAAGAAATGCCGTTGTGGGCTGCATGAAAAGGAGCTGCCCTGCTCCAAGGATTTTAACTGCGAAAccaaatgcaaactgatgagAGATTGCAACAAGCATGCCTGTAATCGCAAGTGCTGTGGCGATCAGTGTCCGCCTTGCGAGAAGATCTGCGGCAAGCAGTTGAGCTGCAACAAGCACAAGTGTCAGAGTGTGTGCCACAATGGACCATGCTATCCATGCAAGTTGGAATCGCAGGTCAATTGTCGCTGTGGCAAGACGCGACGCAGTATCCCTTGTGGCAGGGAGAAGAATGCACGCATTGCCTGCCAGGAGCTCTGTCGCATCTCGGCTAAGTGTCATCATGCTATCAAGCATCGTTGCCACAAAGGCGAGTGCCCGCCTTGTCCACAACTTTGTGGATTACCCAATACTACCAGCGGCTGTGGACACATATGCAAGGTGCGCTGCCATGCAGCCATACGTGTGCCCAAACCAGCAGATGCAGTGCGTCCTCATGCAAATAAGTATGAATACCGTGCACAGCCGCATCCGCGTTGCGAGGAGGGTATTACCGTCACCTGCATAGGTGGTCATGAGGTCGCCACCTGGCCGTGCTGGAACTCCAAGCCGTCGTCTTGTGCACGCAAATGTGGCCGCCAATTAAAGTGTGGCAATCACAAGTGCGCGCTGTTCTGTCATGCGGTGCCAAATCTCATGGATATGCAGCAGCAGGTGGGCTGTTCTAATTGCGAGCAGGGATGCGCTCTTGCTCGTCCTGCCGGCTGCACACATGGGTGTGACAAGGGCTGTCATCCACCTCCTTGTGAGCCCTGCAGTTTTCTTATCAAGAACAAATGCCACTGCGGCCTCGTTCAGGTTATGTACAAGTGCAACGAGTTCTTTAATCAAGAGGGATCGGTGCAGGATATCCTGGAGCGCCGACAGAAGCTGTGCTGCTGTGGGAATCGTTGTTTGAAGAACTTTGCCTGTGGCCATCGCTGCATGACTATCTGCCATCCCGGACCATGTCCCAATCCGGAGATGTGCCGGAAAAAGGTACGAATTTATTGTGCTTGCAAGCGCATAAAACTGGAGATTGCTTGCGACAAGCATCGAGCGGGTCAAACATCTTTGGAGTGCGATTGCAACTGCCAAGCTGAACGCAACAAGGCTGAAGCTTCGGAACAGGAGCAATTGGAGCGCCGTTTGCGGCTGGAGGAGGAGAAGAATCGTCTAGAACTGGAGAAGTTTGAGCAAAAGTTTGGCAAGCGTAAGCCCAAGGAACGCAAGGCGATTGATGTGCAATCGACCAAATCAAAAATCGACTGGAAACGTTGGGCCATCTATGCAGTGTCGCTTCTTGCGGCAGTAGGCGCTCTAGCAGTAGCTTACTATGCGGAGAGTTAA
- Protein Sequence
- MEKFNKAQEKNLAAAKKLVDAYASSSEDEGELDEKHILDQLYKHYKSSPDNSSDSNNANRTATFLENTLHSGAATCLICIGSIRRVEGIWSCKFCYCFFHLKCIQRWANDSVMQMKVKAEQQTGSQGHYNHLGEFVPPKRPKSLHWCCPQCRTDYQPIDRPTQYECFCGKEVNPEAQPFLVPHSCGELCGKLLQPKCGHDCKLLCHPGPCPPCAQLAHSSCLCGKSPTRSVRCIDKNWQCQQTCQSLLSCGKHKCNQRCHRPGQCPPCSSKSSQFCDCKREQKVINCADPKWKCKNICAALFDCGLHNCDKVCHAGPCGGECPLGVRSCPCGNSIRTGGCSEVLETCGDTCQKLLSCGKHSCAQRCHRGHCNLCLVRTKKKCRCGLHEKELPCSKDFNCETKCKLMRDCNKHACNRKCCGDQCPPCEKICGKQLSCNKHKCQSVCHNGPCYPCKLESQVNCRCGKTRRSIPCGREKNARIACQELCRISAKCHHAIKHRCHKGECPPCPQLCGLPNTTSGCGHICKVRCHAAIRVPKPADAVRPHANKYEYRAQPHPRCEEGITVTCIGGHEVATWPCWNSKPSSCARKCGRQLKCGNHKCALFCHAVPNLMDMQQQVGCSNCEQGCALARPAGCTHGCDKGCHPPPCEPCSFLIKNKCHCGLVQVMYKCNEFFNQEGSVQDILERRQKLCCCGNRCLKNFACGHRCMTICHPGPCPNPEMCRKKVRIYCACKRIKLEIACDKHRAGQTSLECDCNCQAERNKAEASEQEQLERRLRLEEEKNRLELEKFEQKFGKRKPKERKAIDVQSTKSKIDWKRWAIYAVSLLAAVGALAVAYYAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01324578;
- 90% Identity
- iTF_01323792;
- 80% Identity
- -