Basic Information

Insect: Scaptomyza cyrtandrae
Gene Symbol: -
Assembly: GCA_035044605.1
Location: JAWNNS010000473.1:7517052-7519268[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0064 0.48 11.1 3.5 2 23 216 237 215 237 0.96

2 12 0.0053 0.39 11.3 0.1 1 21 243 265 243 268 0.89

3 12 0.0044 0.33 11.6 0.1 3 23 277 300 275 300 0.94

4 12 0.28 21 5.9 2.5 5 23 316 334 313 334 0.93

5 12 1e-05 0.00077 19.9 0.6 1 23 341 363 341 363 0.98

6 12 0.0061 0.46 11.1 0.1 1 23 369 391 369 391 0.98

7 12 0.041 3 8.5 4.0 1 23 397 420 397 420 0.97

8 12 0.0077 0.57 10.8 3.9 1 23 426 448 426 448 0.96

9 12 0.0002 0.015 15.8 2.7 2 23 455 476 454 476 0.96

10 12 8.9e-05 0.0066 16.9 1.6 1 23 566 589 566 589 0.95

11 12 0.012 0.87 10.2 0.7 1 19 595 613 595 617 0.95

12 12 1.2e-05 0.0009 19.6 2.5 1 23 623 645 623 645 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0064	0.48	11.1	3.5	2	23	216	237	215	237	0.96
2	12	0.0053	0.39	11.3	0.1	1	21	243	265	243	268	0.89
3	12	0.0044	0.33	11.6	0.1	3	23	277	300	275	300	0.94
4	12	0.28	21	5.9	2.5	5	23	316	334	313	334	0.93
5	12	1e-05	0.00077	19.9	0.6	1	23	341	363	341	363	0.98
6	12	0.0061	0.46	11.1	0.1	1	23	369	391	369	391	0.98
7	12	0.041	3	8.5	4.0	1	23	397	420	397	420	0.97
8	12	0.0077	0.57	10.8	3.9	1	23	426	448	426	448	0.96
9	12	0.0002	0.015	15.8	2.7	2	23	455	476	454	476	0.96
10	12	8.9e-05	0.0066	16.9	1.6	1	23	566	589	566	589	0.95
11	12	0.012	0.87	10.2	0.7	1	19	595	613	595	617	0.95
12	12	1.2e-05	0.0009	19.6	2.5	1	23	623	645	623	645	0.97

Sequence Information

Coding Sequence: ATGAGCACAACCACATCATACTCTGTTAATTCATTATGTCGAGTTTGCCTGGAATATCTTGAAGATTGTACAGTATATGACCTGTTTTTATTGCCAGATCTTGCTAAGAAATTTACTGTTTGCACATCCCTGTTATTGGATGCCCAAGATGGCTATCCCAGGCACCTGTGCTCCAGCTGCTATGCCAGATTGGATGACCTACATGATTTCCAACAGCTTTGCGTTGCCTCAGCACAGCGTTTTAAGCAAATGCTTGCCGATAAAGTCTTCCTTAATGTAAATTCAATTGATATATTCGAACCACTGCCAGTGGCCAGCAACGATGCCGAATTGTTGACCAAGGATGAGCAGCTAAGCAATGATTACGATCCACTCATAAGCCACAAACTTGAACTTATTGATAACGAAGATGATGTGTTTAAAATGCTCGAGCATGTTGACAAGGAAGCCAAAAAGGTAACCGAGGATACACGAGTTATTAACGACGACTCCTCATCCTTCGCATCGGAGTGCAGCCTCAGTGATGACGATGTGCCCTTAGCACAACGATTGCTGGATCAAAACACTGAAACGTACTCCCAAAATGCGTCGAAGGCAAAACGAAAGCGTTTTTCTGCTTCAGAGCGTCATCTTCATCGCATTCTCACCTGCCAAGTATGCCAGCAGAAATTTAAGAAGCAGATCAACTACGACGAGCACATGAAACACCACAACGAACTGTTACCGTTTCAGTGTAATGTGATAAGTTGCAAGAAGGGCTtcacaacagcagcggcaCTGCGTCTGCACGGGGATTATGCGCATGCGTTGAGTGCCACTGAAATACCCTGCACCGTTGAAGACTGTAAGCTGGTATTCCCACGCATGCGACTGCTTACAATTCATCTTAAAAAGGTTCACAACATGTCACGAGCGAGTGTGCCGCGAACGGAACAGATTTGCATTGAGTGCGGCATGCACTTCCGCTGTCCCATGGCGCTCAAGAAGCACATGTACAAGCACACCGGCGAGCAATTGCCCTATCCATGCAACATATGCGGCAAGGGCTTCCACATAAACAGCGCCCTAAAGAATCATCTGCTGCGACACGCGGGAATCAAGAACTATGTGTGCCCCTATTGTGGTGTGGGTAAAACCACACGACAGGAGTGGAGCAAACATATTCTTACTCATACCCAGGAGAAGATGTTCAAGTGTCATATATGTGAGCATGCTACACATACTAAGCGAGCGCTGGACAATCATGTAAAGATCGTGCACGAAAAGGTCCGAAACTATGCGTGTCAATACTGTGGAAAGACCTTTGGCAAGTCTCATGCTTGTAAGATACACGAGATGACACACACCGGCGAAAAGCGTTGCGAGTGCAAGGTCTGTGGCAAGAAATTCCTTTATTCAGAGAGCTTAACCAAGCATCTGAAAATTCACGAAAAGAGTGTTGAGCGTGCAATTGAAACCTATCGTCAGCGCCAGGTGCCAAATGGAAACGTTGATGATTGCCAGAAGGACAATGCTGCGGACCAGCTATTGAAGGTGTGTGCAGAGTCTGTAGCAACCATACCGCGTGATCCGCGACGTGTGGAACGCGTGGACATTGCGCAGTTGGCCGGCACCGTTGTAAATCCCATTCCCGCCGTCCTGATATCCCCCAATGTTCAGCAAGCCCAAGGCAACACTGTGGAAAAGGAGGGCATGCATTTCTGTCCCGGTTGTAATCAGGGCTTTAACAACTTGGGCAACATGAAGCGACACTACAAAAGCGTCCACGAGAAGGTCAAAGATTTTGAGTGCCGCTTCTGTGCGCGTCGTTTTGCCAACTCGCAATCCTTAAAGCAGCACGAATGGATTCATACTGGCGAAAAGCCGCATGTCTGCAAGACGTGTGGCACTCACTTCCGTCAGGAGGCGGCCCTTATACGTCACCAGAAGGTACACGAAGAGAAACCACCGAAGCCAGTGAAACCGCCCAAGCAAATAACTGAAAAGTGTCGTCAAAAGGAGCTGCAGAAATGTGAGAAACGGCGCTGTGTTGAAGCTTTGCGTCAAAAAATAGCCGAAGCCGCAAAAGAGGAGCTTGAAGAATTGGCCAAGCAGCGTGTCCtcgaaaagcaacaaaataccTACAAACAGTATCAggctgcagcggcagcagttgCTGGACAGACAACAACGATGCCACTAGACGATgaaattgaatgcaatttactgtccagttaa
Protein Sequence: MSTTTSYSVNSLCRVCLEYLEDCTVYDLFLLPDLAKKFTVCTSLLLDAQDGYPRHLCSSCYARLDDLHDFQQLCVASAQRFKQMLADKVFLNVNSIDIFEPLPVASNDAELLTKDEQLSNDYDPLISHKLELIDNEDDVFKMLEHVDKEAKKVTEDTRVINDDSSSFASECSLSDDDVPLAQRLLDQNTETYSQNASKAKRKRFSASERHLHRILTCQVCQQKFKKQINYDEHMKHHNELLPFQCNVISCKKGFTTAAALRLHGDYAHALSATEIPCTVEDCKLVFPRMRLLTIHLKKVHNMSRASVPRTEQICIECGMHFRCPMALKKHMYKHTGEQLPYPCNICGKGFHINSALKNHLLRHAGIKNYVCPYCGVGKTTRQEWSKHILTHTQEKMFKCHICEHATHTKRALDNHVKIVHEKVRNYACQYCGKTFGKSHACKIHEMTHTGEKRCECKVCGKKFLYSESLTKHLKIHEKSVERAIETYRQRQVPNGNVDDCQKDNAADQLLKVCAESVATIPRDPRRVERVDIAQLAGTVVNPIPAVLISPNVQQAQGNTVEKEGMHFCPGCNQGFNNLGNMKRHYKSVHEKVKDFECRFCARRFANSQSLKQHEWIHTGEKPHVCKTCGTHFRQEAALIRHQKVHEEKPPKPVKPPKQITEKCRQKELQKCEKRRCVEALRQKIAEAAKEELEELAKQRVLEKQQNTYKQYQAAAAAVAGQTTTMPLDDEIECNLLSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00560508;
90% Identity: iTF_01328062;
80% Identity: -