Basic Information

Insect: Scaptomyza cyrtandrae
Gene Symbol: -
Assembly: GCA_035044605.1
Location: JAWNNS010000650.1:5102692-5105221[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.003 0.22 12.1 0.6 1 23 221 243 221 243 0.98

2 7 0.00027 0.02 15.4 3.6 1 23 588 610 588 610 0.98

3 7 6e-06 0.00045 20.6 1.8 1 23 616 638 616 638 0.99

4 7 2.1e-05 0.0016 18.9 0.7 1 23 644 667 644 667 0.97

5 7 1.5e-07 1.1e-05 25.7 2.5 1 23 673 695 673 695 0.97

6 7 1.9e-06 0.00014 22.2 0.8 1 23 701 723 701 723 0.98

7 7 1.3e-06 9.9e-05 22.7 0.5 1 23 729 751 729 751 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.003	0.22	12.1	0.6	1	23	221	243	221	243	0.98
2	7	0.00027	0.02	15.4	3.6	1	23	588	610	588	610	0.98
3	7	6e-06	0.00045	20.6	1.8	1	23	616	638	616	638	0.99
4	7	2.1e-05	0.0016	18.9	0.7	1	23	644	667	644	667	0.97
5	7	1.5e-07	1.1e-05	25.7	2.5	1	23	673	695	673	695	0.97
6	7	1.9e-06	0.00014	22.2	0.8	1	23	701	723	701	723	0.98
7	7	1.3e-06	9.9e-05	22.7	0.5	1	23	729	751	729	751	0.98

Sequence Information

Coding Sequence: ATGGAGCGCAAAGAAGTGGACACAGAAGAGTTCATCGACCACACGCTGCTGGCGTCGGCGCTGATGCACAATAACTTTATGATGGATTTAATGGATCATACAGGCGTGTTTCCCAAAACCGAAGGTCCCACCAATCTCAGCACAAATGGACATGGCGCCACATCAGGCTCCCCGCCAGAGCTCAATTTCCACAATACGATATTCCAGTTTGTCAACAAACATGTTGTGGGAGAGGATGGAGAAGTGGGTTCAAAGCAGGTGCCCGACAAGGAAACAGGTGTAGAGTTTCTTACCATAAACAGCAGTTTCCTTGacagagcaacagcagctagcGGCTCAGAAGCAACAGGCAGCAGAGATGTGGTGCCCCAACAGCAAGAACAGGTGCCAGAATCGACATATCCTGCACTCGCAATTGAACCCACAGTGCCCATAGATGTGTCGAATGCTTTGGAGGATGATGATCTCCTTTATGCCCATAGTGCATGCACAATAAATGCTCGAAAGATCCTGCCACACAAAAAACGCATCTCGCGTAAGTTGAAGGGTTCTATGTGCATCATGGATACAGCGGatatggagcagcagcagcagcatcaacagcacaAGCATAATGTGGTACAGGATCAGCAGGTGCAGCCAACGGTGCAGGTTGCCAACTATAGCTGTGAGATCTGCGGCTATGCGGTCCATACACAAATCGAATTTTATGCACATCTCAAGCAGCATTATGATCCCGTGAGTCTCGAGCAGCGTCTCGAtgtaccacaacaacagcagcaacaccaacagcagcaacaacaacaacagcatcagcagcaacaaaaagagcCACTAGATATGTGTGGACTATCCACACAGGATAAGCTGCAACAGGAGCAAGCCAAACTGGATCAGGTCTTTCATGATGTACAGCTGAACTTTGAGAACTTTCACAGCATTAGTCATGTGGATGATGATGTTGTGGATAATGTAAGCGTCAATATGGTCATCCATGACGATACAATGTCAATGCACAAAACCGATGGCAAACTTACGCCAGTTGGAGTTGCAAATGCGACTGCCTCCAATGATGTGCCCGTTGTGGATGATGTGGAGTTCAGCGACACAGAGGATATGCTCGAAGGGATACGCAATGTGGTGGACAAGGTGTCCATAGAGGATACCTGCGATGAGCTGGTCGATCTGGAGCTAACCACAAGTGGCATGCGTGCTCCCTGGTTCAATAATAGCTTCAGTGATATTGCATTCTCTGGTCTGCTGTTGCCTGGTGAGCCACcgccaccagcaacaacagaaacggcaactgaacctgaacctgaatcggtgataaaaaaaaatgaaattgagtTGAAGGAACAAATGACGCTCAGTTTTCTCAACAAGCCAAATGAGCATCAGTCGTCACAGCCCAGACTGGAAATGGGCCACAAAAAGAACTAtattgcagcagctgcattcAATGCCATTCACTCCAATGGCAGTGATAGTAACCACGAACAGACATTACTGATTAACCCGCCAGAACAGACAACATCGCCCAACTCCTCCAGCACCTCGGCCATTGAGCAATTGCAGCATTCGCCTTTAATAATCAGCGAATCCTTCAAGCTGGAGGATGTGGAAAGCAGTGCGCCAGTTCGCAGCGTGGCAACATCACCAGCAGGCACTGTCATAATCAATGACAAAAATGTTGAGTACCTAGTGGAACTGGACAAGTACAACAGCGATGAGCCCAGCAGCGAGGTTATAAAGCGCAAATATATATGCGACAAGTGCGACAGGAATTTCAATTCGTACAATGCCCTCAAGTATCATCAGCATACGCATAACAAGGAGCGTGCGTATCAGTGTTCCAGCTGTCAGTTATCCTTCTATACGCCCAGCTCCCTAAAGCAGCATGAACGCACACATACCGGTATTCGACCCTTTAAGTGCGAACAATGCGAATTTAAGTTTCGGCAATGGGGCGATCTCAAGTTGCACATAATCTCGCGGCACAGTGAGATTAAGGCGCACATGTGCGAATACTGTGGCAAGAGTTTCTCCCGCAAGTACTCACTAGTCGTGCATCGTCGCATCCATACAAGCGAAAAGAACTATGCGTGCCAATACTGTGACAAGACATTTCGTGCCAGTTCCTATCTACTGACACACATCAAGGTGCATACGGGTGAGAAACCCTATCCATGTACGGTCTGCGATAAGAAATTCCGTGTGAATGGTGATCTGAGGCGACATTCGCGTATTCACGATCCATCGCGTCTGACACAGCGTTCGAAGCGCTGGAAACAAATCGAGGATGAGGCTGATGCCGTTTGCGGTGAAAGTGAACAGGAAATTTTGGGCTGTTAA
Protein Sequence: MERKEVDTEEFIDHTLLASALMHNNFMMDLMDHTGVFPKTEGPTNLSTNGHGATSGSPPELNFHNTIFQFVNKHVVGEDGEVGSKQVPDKETGVEFLTINSSFLDRATAASGSEATGSRDVVPQQQEQVPESTYPALAIEPTVPIDVSNALEDDDLLYAHSACTINARKILPHKKRISRKLKGSMCIMDTADMEQQQQHQQHKHNVVQDQQVQPTVQVANYSCEICGYAVHTQIEFYAHLKQHYDPVSLEQRLDVPQQQQQHQQQQQQQQHQQQQKEPLDMCGLSTQDKLQQEQAKLDQVFHDVQLNFENFHSISHVDDDVVDNVSVNMVIHDDTMSMHKTDGKLTPVGVANATASNDVPVVDDVEFSDTEDMLEGIRNVVDKVSIEDTCDELVDLELTTSGMRAPWFNNSFSDIAFSGLLLPGEPPPPATTETATEPEPESVIKKNEIELKEQMTLSFLNKPNEHQSSQPRLEMGHKKNYIAAAAFNAIHSNGSDSNHEQTLLINPPEQTTSPNSSSTSAIEQLQHSPLIISESFKLEDVESSAPVRSVATSPAGTVIINDKNVEYLVELDKYNSDEPSSEVIKRKYICDKCDRNFNSYNALKYHQHTHNKERAYQCSSCQLSFYTPSSLKQHERTHTGIRPFKCEQCEFKFRQWGDLKLHIISRHSEIKAHMCEYCGKSFSRKYSLVVHRRIHTSEKNYACQYCDKTFRASSYLLTHIKVHTGEKPYPCTVCDKKFRVNGDLRRHSRIHDPSRLTQRSKRWKQIEDEADAVCGESEQEILGC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01322106;
90% Identity: iTF_01327338;
80% Identity: -