Basic Information

Insect: Scaptomyza cyrtandrae
Gene Symbol: -
Assembly: GCA_035044605.1
Location: JAWNNS010000650.1:16531151-16534955[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00035 0.026 15.0 1.4 1 23 303 325 303 325 0.99

2 8 2.2e-06 0.00016 22.0 0.8 1 23 330 352 330 352 0.98

3 8 1.1e-07 8e-06 26.1 0.2 2 23 361 382 361 382 0.97

4 8 6.5e-07 4.8e-05 23.7 0.3 1 23 388 410 388 410 0.98

5 8 8e-08 5.9e-06 26.5 3.9 1 23 416 438 416 438 0.98

6 8 3e-07 2.2e-05 24.7 1.9 1 23 444 466 444 466 0.98

7 8 6.5e-06 0.00048 20.5 5.1 1 23 472 494 472 494 0.98

8 8 0.00022 0.016 15.7 0.5 1 21 500 522 500 523 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00035	0.026	15.0	1.4	1	23	303	325	303	325	0.99
2	8	2.2e-06	0.00016	22.0	0.8	1	23	330	352	330	352	0.98
3	8	1.1e-07	8e-06	26.1	0.2	2	23	361	382	361	382	0.97
4	8	6.5e-07	4.8e-05	23.7	0.3	1	23	388	410	388	410	0.98
5	8	8e-08	5.9e-06	26.5	3.9	1	23	416	438	416	438	0.98
6	8	3e-07	2.2e-05	24.7	1.9	1	23	444	466	444	466	0.98
7	8	6.5e-06	0.00048	20.5	5.1	1	23	472	494	472	494	0.98
8	8	0.00022	0.016	15.7	0.5	1	21	500	522	500	523	0.94

Sequence Information

Coding Sequence: ATGAACGGAACACCCGCAACAAGAGTTAGAAGAAGACGCAGCAGCAGTATGGGCTTTAAGCATGCAATGCTGCAACGCAGCTACGAACTTGCCGCATCGCCTGGTCCAGCTGCCGTGGCGCCGCAACAAGTTACGGATTTTAGCATAAGTCGCATTTTGGGCAGCGCTAGCAAAAAGGATAAGGATCAGGCGACTAAGCAGACTGCTGCCGGCGCCAATAGTATACTGGATCTCTCCAAAAGcagtcaacaacagcaattggcagcaacaacagttgcagttaACGTGCCATCAATAGCGGGAGGAGATTCAGCTTATGGCTATGGCGGCATGTTGCCACCGGATTTATTGGCCATGGCCAGTGCCACAAAGTTTTATGCACAATTTTTTCCACATTTGCTGCCTGCCTatgcagcggcagcagctgccgccgGCTTGACAACACCACCAACCTCACCataccagcaacagcaacatcagcaacatcaacaacatcaacaacatcagcaacatcatcaacatcatcaacaacaacagcagcagcagcagaaacgtTACTTTGCTCCCTATGTGATCAACAGGCAAAGTCCGACGCGTGTCTGCACCCGTGCAGATTGCCTGGAATGCTTGGACTACTACAAACAATTTGGTGCTGGCTACAAGCCGACACCGTTGATATCGCCGGCGGCTTCTTCGGTGAGCAGCTCGAGCAGCACAAGGATTCACAGGGAGAACAATCACAGTTCCACAAACATTTCCTTTACCGCGGTGACAAATGTGAATCTAAACACGACAACAGCCACAATGACAGCATCGCCTGTAagaacaacaccaacatcagCATTATCCAAATTAGTTTcgagcaacagcatcaacaacaatgcaacaacagctgaagAGATAAGCTACAAGTGTCGCATATGCGACAAGGTTTTCGGATGCTCCGAAACACTTGAGGCGCACGAGAAGACACACAAATCGCCGCGTTACGAATGCTCGGATTGTGGCAAAGGATTCTCGCAACTGCGCAACTATAAATATCATCTGTCCGTGCATCGTGGCACGAAGGAGTTTGCAGCCGAGTGTCCAGAGTGTGGCAAGACCTTCAATGATAAAGGCTATCTGAGCAGTCACATGAAGATTCATCGCAATCGCAAGGAATACGAGTGTCCATATTGCCCCAAATCGTTCAATCAGCGTGTCGCCTTCAATATGCACGTTCGCATTCATACGGGCGTCAAGCCGCACAAGTGCGCCGAATGCGGCAAGCGATTCTCTCGCAAGATGCTACTCAAGCAGCACATGCGCACGCACAGCGGAGAGAAGCCGTATCAGTGCTCCGTTTGCGGCAAATCTTTTGCGGATCGCAGCAACATGACCCTGCATCATCGTCTGCATTCAGGCATCAAGCCATTCAGCTGCCCCTTATGCCCCAAGGCATTCACTAAGAAGCATCACTTGAAGACGCATCTCAATTATCACACCGGCTGCAAGCCCTACGTTTGTCCACATCCCAATTGCAATCAGGCGTTCACCCAGTCCAGTAATATGCGCACTCATGCCAAGAAATGTCAGTACCGACCGCTAGATGGCGTTCAGCCATACCCAATGCCTCcgcacaaacagcagcagcagcagcagccgcaaaagCAACTACAATCTAGGGCCATGACAGCAGCTCCAAGTTTTGTTATGCCATCGGCAACatttgctgcaactgttgcaacatCATCCGCATTTCCGCCAGCACAACAAACGCTACTCAGCAATTTGAGAACCTTCCAAGCTATATAG
Protein Sequence: MNGTPATRVRRRRSSSMGFKHAMLQRSYELAASPGPAAVAPQQVTDFSISRILGSASKKDKDQATKQTAAGANSILDLSKSSQQQQLAATTVAVNVPSIAGGDSAYGYGGMLPPDLLAMASATKFYAQFFPHLLPAYAAAAAAAGLTTPPTSPYQQQQHQQHQQHQQHQQHHQHHQQQQQQQQKRYFAPYVINRQSPTRVCTRADCLECLDYYKQFGAGYKPTPLISPAASSVSSSSSTRIHRENNHSSTNISFTAVTNVNLNTTTATMTASPVRTTPTSALSKLVSSNSINNNATTAEEISYKCRICDKVFGCSETLEAHEKTHKSPRYECSDCGKGFSQLRNYKYHLSVHRGTKEFAAECPECGKTFNDKGYLSSHMKIHRNRKEYECPYCPKSFNQRVAFNMHVRIHTGVKPHKCAECGKRFSRKMLLKQHMRTHSGEKPYQCSVCGKSFADRSNMTLHHRLHSGIKPFSCPLCPKAFTKKHHLKTHLNYHTGCKPYVCPHPNCNQAFTQSSNMRTHAKKCQYRPLDGVQPYPMPPHKQQQQQQPQKQLQSRAMTAAPSFVMPSATFAATVATSSAFPPAQQTLLSNLRTFQAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01326588;
90% Identity: iTF_01328029;
80% Identity: -