Scyr006634.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scaptomyza cyrtandrae
Gene Symbol
hang
Assembly
GCA_035044605.1
Location
JAWNNS010000639.1:381161-393364[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.34 25 5.6 1.0 3 23 474 495 473 495 0.93
2 17 0.99 73 4.2 3.2 3 22 602 621 600 621 0.89
3 17 0.00074 0.055 14.0 3.3 1 22 718 739 718 741 0.90
4 17 0.085 6.3 7.5 0.1 2 21 753 772 752 773 0.93
5 17 0.00085 0.063 13.8 0.2 2 23 920 942 919 942 0.95
6 17 0.0025 0.18 12.4 0.1 1 23 950 973 950 973 0.96
7 17 0.0031 0.23 12.1 0.1 3 23 1061 1081 1060 1081 0.93
8 17 0.00035 0.026 15.0 2.9 2 23 1201 1223 1200 1223 0.97
9 17 0.028 2.1 9.1 0.2 2 23 1232 1254 1231 1254 0.95
10 17 0.0017 0.12 12.9 0.3 1 23 1267 1290 1267 1290 0.97
11 17 0.00015 0.011 16.2 1.1 1 23 1341 1363 1341 1363 0.99
12 17 0.0024 0.18 12.4 0.9 1 23 1371 1394 1371 1394 0.96
13 17 0.083 6.2 7.6 0.4 2 19 1402 1419 1402 1420 0.94
14 17 0.00019 0.014 15.9 0.3 3 23 1524 1544 1523 1544 0.97
15 17 0.0062 0.46 11.1 0.1 1 23 1579 1601 1579 1601 0.97
16 17 0.00073 0.054 14.1 0.6 2 23 1684 1706 1683 1706 0.93
17 17 0.059 4.4 8.0 1.4 3 23 1762 1782 1762 1782 0.98

Sequence Information

Coding Sequence
ATgtgcacaacaacatcagcagcagaatGTCGCTGTGCGGTTGCatggATCACATCCGTGGACCGTCTATCGTTGCATATTTGCCATGCCTGCATCAGTTATTTGAACTCTTGGCAAAGCTTCAAGAATCGCTGCCTCAGCTCACAGGCCAAGCAGCGTCAATGGCTGGAGAACGATAAGACCAAACAGCAGACGCTACTCGGGTACTTGGACTTGAACAGAGCCGAGAATGGCGGTGGTGCCGCCATTgagaaacaacagcagcagcacgaatcgaaaatcgatacAGCGACGACGAGTGCTGCGGAAAAGGCgtccgccgccgccgccaacaTTTTGGATGGCATACCTCAACTGAAGAAACGCAAATCGTTAACAGTCTATGTGAGtccaaagcaacagcaaaaacaatcgCAAcagcttcagcagcagcagcaacaacaatcgcagcAACAGCTTCAGCAACagcacgcaacaacaacaacagcggcagcagcagcagaaagaaCAACAAGCGCAACGGCAGCGACGACGGCGCCAGAGTCACAACAAACATTACAAACCCTTTTGTTGCAGGTGCCGCCCATAGCGacagcacaacagcaacagcagcgcaaatatcaacaccaacaacagctacagcagcagcagcaacaacagcaacaacgtgGCAAGCAgcaatatcatcatcatcatcatcatcatcaacagcagcagcagcagcaacaacaacaacaaacattatcaccatcatcaacagcagcgaTTGAGTCGCATTCGTCAACCGcgacgccaacaacaacatcagcagcaacatacatcaacagcaacatccTGCCCCCGTTGCCGCCATTattgccgccgctgctgcagtCAACTGCCACGTtgtcaactgttgttgctaatgcagcagcgccattgccattgccattgccgttgccgttgtcgcTGGCGCTGCCACTTGATTTTAGCCAGAATAtaaatccaaatccaaataatattcaaagGCAAGCGCCGCCACCGCTGCctccagttgctgctgcaacaatgACCAGCAATATTGCATCCACTGTTACTTCCTCTACAGCTGCCTCGGCCACAtttggctctggctctggctctgttGGTGCAGTCACGACTCCATTGCTTATGCCACCGCTGCCTGCCGTGCCCATCAAGGATGAGCCTCTGGACGATACGGATGATGATTTTCAAATGAAGTGCATCGATGAATCGGATGACATGATGGATCCAACAATGTTCCTAGAGCGCTCCGAGCATGAGGGCGATGTGCCACTAAATACCTCCGACTATGATTATACGGCTCAACATTGCGTGACGGCAGTTGCGGCGGCGGCATCATTGCCCGCCAGCGCTGTTGCAAATGTGGCCGCCGCTGGCGATTCAAAGGTGGCCAGTTGCCGTGCCTGCAGTCTACAATTCTCGACGCGGGCAAATGCGCGACGCCACGAGCGCAATCTGCATCCGAATCTGTTCCAATTGTCGACAGACTCGCCAAATAATACGCCCATTACAAAACCGACACCAGCATTGGCAGCCGCTTTAGAGATACAGCGTGCCGCTGCCGCAGCCGCGGCCACCGCcgaagcaacaaaagcagctgccGGTGGCAATATATCGGCTCAAAAGTATCGCCAGGTAGTCATGAATACGTTCATTAAGTGCGAAAACGGTGGCTTCGACTACGACAACCCGGAGCAGTATCAGCAACTGATGTCGCGCGACAAGGTCGACTTCATCAATGAGAACAATGAGTTTCTGGAGCAATATCAGACGATGACATGTCGCTGTTGCAACAAATACTTCAATACCTATAAGAACTTTATGGCACATGTGCGCAAAAAGTATCCATTGTTACCGCGTAATTTGTGCTTCAATTGTCTCAAGATGAACGATTCTAAGGCGCTGTTCATATCGCATCTGAAGAAGCGCAATTGTATCAATTTGTATCGTGTGCTCAACGCATTGCGCACGAAGCAACCAAACTTTGTCCATGCCAACGCCAACGCAGATGCAAGTGCTGCAAGCGGTGTTTTGGCAACACCAGTAACGGCGGCAACGCCAGCACACGAAACATCAACGGATCGTCCGGAGAAGTTGCGTGCCAAGGAGCTGCTGGTCAATAAACTGTACGAGTGCAAATTGTGCCCAAAAGGTTTTCGCACCAAACACGAGTTTCGCACCCATGTGTACGATAAGCATGCGGATGTGCAGCGCAAGGATAACAATTCGATACAGTGCAGCTTTTGTGGCTTGGACTTTGCCGATCCGGTGGATCGACGTCGCCATTATAACAATATGGATTGCATTGTGCGATTGCGCTGCATGACCTGTGATGCCAAGTTGGAGACGCATCAGCGCTTCCTTGACCATGTCTATCAGGATCATTTGGGTGGTGTGAGCAGCGATAATGCGTCGACGGCCACAAGCGGCTTGGATCATTCGCCACCAGGCAAGCGTAGCCTGTTGGGTGCCCTTGGCATTGGATCGAATGATGAATCgcgcagcagtagcagcaatcacaacaacaacaaagacaaagacaacaatccaacagcagcagcaacagcagcaggtggTGGAGGTGGAACGCCATTAACATCAACACCGAAAgtagcaggagcagcagcaacaacaaccgcagcagcagcaggaggaggaggagggaCAAGTGGCGGATCTACATCGGGCGGACGCGATGCACCAAAATCGCAATATTTTTCACGAATGCCACAAGTCTGTCCGATCTGTGGCCAGCAGTACAATAACTATAACAATGTGCTGCGACATATGGAATCGAAGCATCCCAACAAACTGCCGGAGACATATAAGTGTGTACGGTGTGGCCTGGGTTATCCGCGCATCTCCTATCTGCGCGAGCACATGATCAACATTCATGGTGTGGACAAGAATCGTCACTCGGGCGGCTTTGAGTATATTGTGAATGCCGATGCAGTTAAATTGGCGGATGGCAGCACACCAAATGTCTATACGGGACGTTACGATTATGTGATGAAGGATTTAATATCTATAAACAATGGTGGGACACTCGatgatgatgatgaggaaaGCGGCAGCATTGCAAAAAAGATGCGTTTGGATGatagcagcaataacagcagcatTGCCAACATGAGCATTGCCAACCAGCAAAAAGAGTGCATTATCTGCAATGCCGTGTTTAGCAACAATATTGGTCTTTCGAATCATATGCGTTCGCATTATACGGCCTCAACAACGACAAGTGCAGCATTAGCGGCGGCCAATCGCATGACGCCCAAATCATTGACAATAACGGCAACACCACCGTTGGAAACGGCTGCGGCAACAATGTCCACAGCGCATAGCGCATCGGCAGTGGCAACACCATCAGCGCAAACACTCAAAACAACACTTACAtcgtcgacaacaacaacaacaaaaatcgcagGAGCAACAACGACAGCTTTAGCTGTAGCAGGAGCAAAAACAACTGGTGGTGGAAATTTGCCGCCAGCGATGGTCCATCAGACGGCACAGGAACAAGCGGTATTCCGTCGAAGTTTGGATCAGGCAGCTGATCGACGATTCCGTCGCATGCGTTGTCGCATCTGCCAGCGAAGATTTAGCTCTAAGAAATCGTATCGCTATCACATGCTCACCGACCATCAGGTGCAGAATGTTCAGTTCATCAAGTGCAAGCTATGTAATGCCGAATTTGCCTACGAAAAGGGTCTGAAGGTGCATCTGTTCAAGGTGCACGGTCGAGCCATTAAGGATGAGATGATTATCAAACAATTCGAGTGCGATGTGTGCTCCACTGTCTACAGTTCCGAACTAGAATTGCAGCAGCACAAACGCAGCGTACACAAGTCAACGCATTCTATTGCTAGTGATTCAGTTGCTGGCAAATcaacatcatcgtcatcatcaacatcgaAATCTGCTACGACTACCTCAGCTGAACTGGCCGCCGACACATCTGGGATCACGGCGGCAGCAGTTCTGCCACTTTACTGGTACCAGTGCAAGTATTGTCCATCAAACTTTAACACCAACAAGAAACTGGCCATACACATCAATTCGCACGATGAGTTCGATTCGAATGATTATTCGTGCAAGGATTGTGGCAATGTCTACAGTGGTCGCAAAAGCCTATGGGTTCATCGCTATAAGAAGCATCCACAGGTGCCGGATCCGGCCGAGTGTACGCTGTGCCGCAAGATGTTCTTTGATCGCCAAATGCTGGAGAATCATACACCAACCTGCAATCGCAAGCCAATCACTGCCACTGGCGCCCATCAGCAGCaggatcagcagcagcagttacaATCGCAACACCAACGTGTCATCTTCAAGCACAAAACgggcgatgatgatgacgaggagggtaatgatgatgatcagCTACTCCTGCTGGACGatggttgtggtggtggtggtggtggaggcaGTGATAGTAATGGAtgtggtggtggtagtggtggtggtgcatcaacagctgctgcagctgctgccgcagcAACTATAAAAACAAGCACAATGAAGATACGCATTCCCGAGGTGGCATGCACCATTTGTGGTGCACGATTCACCGACCAGGAAATGTTCAGCAAACACATCGAGAAGCACGAAAAAGATCTCTATGTTGACGATCCTTTGGCTGCCATGTTCGATGATGGCCCAGCCGATGCTGGACAATTTCAGGTTGAGCGTCAAAATGAGAATGGCGAATATGCGTGCGATTTGTGCGCCAAGACGTTCCCGCAGGTGATAGCGCTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGaatCCAACCATCGATGGCGAAGCGACAACattgaacagcaacaacaacaacaacaattcgctGAGCTCATCATCGATGCTGCATCTGCGCGAATTGCATGCTGTGGGTCTGATGcccaaccagcaacaacaccagaaacagcagcaactgcaactgcaacaacaacaacaacatcagcagcagcagcgatcgAGCAGCAAATCAATGAAACGCAAACGTGAATTGAAATGCGAATATTGCGCCTCCACAttcataagcaacaacaatctgcGTCGCCACATGTACGAGCTGCACAAACATGAGGTCAGTAATCTGCCTGAGCCGCCCGTTATTGAGGTGGATGAGCCGTTGAAGTGTCGCCGTTGCGATAATTTAGAGTTTGAGACCAAAGAACTATGGATCGAACATAAAATGGCCGATGCGAAAGTTGTGCGTCCATTCTGTCCATTCCAATGGGGCTGTGATTTGTGTGGCGAATATTTGTCGCGCAAAGAGAAGCTGCTCAATCACATACACAATCATCTCAAAGAGGATGTGATTGTGCCGGTGGCGACTACTAAGCCGCTACCAaaaacaccagcagcaacaacaaccgcaacagcTTTGAAAGCAAAGGAAACAGCCGCCGCAACagtcgcaacagcagcaacatcaacagcagcagcagcgaaggtaaaaactacaacaagtgcagcagcagtagcagcagcgacgAATGATCTTAAGGGtaataaacaacagcagcggcggGATCAGGTAGAGGCAGAGGCgaagatggagatggagatggagacgGAGACGGAGGCTAATGATGATGTGAAGCTAGCAAAGGCTAGCAATCATAGTGATATGGATGATGATGAGAGCGGCGATAGTGGtggcgatgatgatgaaggGGCCAGCACTAGTGCTGAcgatgatgctgatgctgatgatgatgacgacgatgacgatgatgacgatgacgatgatgaggacgatgaagatgacgatgatgatgacgaagGCGACAtcgatgatgaggatgatgatgatggcgacGACGAAGACGTTGGTGAAAATGTTGTGGcacagcaaatgcaattgcaacagccacaaagtgcaaacacaaaaaaaaataatagcacaattgttgataatgatgatgatgatgatggtgacgACCTCATTGAGGAGGTTATCGATGAGGATGGCATTGTTGTCGAGCAGCtggacgacgacgatgatgataatgatgacaaCAACGGTGGCGGTGAtcatgatgacgatgacgatgacgacgatgatgatatCGATGAGGATgacgttgatgttgatgatgatgacgatgatgatagTAACTCAATGgagaggcaacaacagcagccaagacgtctcaattttaattactcgcgcaccaccaacaacaacagcgatcGGCTAAATGGCGATAGCAGTGGTAACGGTGGTAAACAGGAAACGGTGGACACTGGGGGAGGGGAGGAGGTAGATGATATGAatactgatgatgatgatgatgatggtgatgacgATGGTGATGCTGTTGGTGAAGCGATGACCATTGATGATATTATTGAAGAAGATGATGGtgtggatgatgatgatgacgacgtcGTTGGTGtcggtggtggtgttgttgaggatgacgacgacaacgacgataacgatgatgatgttggtgatggtgatggggATGGTGATGACGAGGACatggatgaggatgatgatgatcatgatcatgatcataGAAATGTCGTGGGCAATGGTGTTGATCGTGATGATcgtacaacatcatcaacatccgAAAGCgaatcgacaacaacaacaatatcgcATTCAACAACTGGAAGTAGCACCAgtaccagcaccagcaccagcagcaaaagcaatagcactagcagcagtagcaaaagcacaaataacaacaacaataacagcaacagcaacaaaacaaaaaccaaaaagtccAGCTTGGAAGCAacgaagacaacaacagcgaatGCTGCAACGGGCTCAAACTGa
Protein Sequence
MCTTTSAAECRCAVAWITSVDRLSLHICHACISYLNSWQSFKNRCLSSQAKQRQWLENDKTKQQTLLGYLDLNRAENGGGAAIEKQQQQHESKIDTATTSAAEKASAAAANILDGIPQLKKRKSLTVYVSPKQQQKQSQQLQQQQQQQSQQQLQQQHATTTTAAAAAERTTSATAATTAPESQQTLQTLLLQVPPIATAQQQQQRKYQHQQQLQQQQQQQQQRGKQQYHHHHHHHQQQQQQQQQQQTLSPSSTAAIESHSSTATPTTTSAATYINSNILPPLPPLLPPLLQSTATLSTVVANAAAPLPLPLPLPLSLALPLDFSQNINPNPNNIQRQAPPPLPPVAAATMTSNIASTVTSSTAASATFGSGSGSVGAVTTPLLMPPLPAVPIKDEPLDDTDDDFQMKCIDESDDMMDPTMFLERSEHEGDVPLNTSDYDYTAQHCVTAVAAAASLPASAVANVAAAGDSKVASCRACSLQFSTRANARRHERNLHPNLFQLSTDSPNNTPITKPTPALAAALEIQRAAAAAAATAEATKAAAGGNISAQKYRQVVMNTFIKCENGGFDYDNPEQYQQLMSRDKVDFINENNEFLEQYQTMTCRCCNKYFNTYKNFMAHVRKKYPLLPRNLCFNCLKMNDSKALFISHLKKRNCINLYRVLNALRTKQPNFVHANANADASAASGVLATPVTAATPAHETSTDRPEKLRAKELLVNKLYECKLCPKGFRTKHEFRTHVYDKHADVQRKDNNSIQCSFCGLDFADPVDRRRHYNNMDCIVRLRCMTCDAKLETHQRFLDHVYQDHLGGVSSDNASTATSGLDHSPPGKRSLLGALGIGSNDESRSSSSNHNNNKDKDNNPTAAATAAGGGGGTPLTSTPKVAGAAATTTAAAAGGGGGTSGGSTSGGRDAPKSQYFSRMPQVCPICGQQYNNYNNVLRHMESKHPNKLPETYKCVRCGLGYPRISYLREHMINIHGVDKNRHSGGFEYIVNADAVKLADGSTPNVYTGRYDYVMKDLISINNGGTLDDDDEESGSIAKKMRLDDSSNNSSIANMSIANQQKECIICNAVFSNNIGLSNHMRSHYTASTTTSAALAAANRMTPKSLTITATPPLETAAATMSTAHSASAVATPSAQTLKTTLTSSTTTTTKIAGATTTALAVAGAKTTGGGNLPPAMVHQTAQEQAVFRRSLDQAADRRFRRMRCRICQRRFSSKKSYRYHMLTDHQVQNVQFIKCKLCNAEFAYEKGLKVHLFKVHGRAIKDEMIIKQFECDVCSTVYSSELELQQHKRSVHKSTHSIASDSVAGKSTSSSSSTSKSATTTSAELAADTSGITAAAVLPLYWYQCKYCPSNFNTNKKLAIHINSHDEFDSNDYSCKDCGNVYSGRKSLWVHRYKKHPQVPDPAECTLCRKMFFDRQMLENHTPTCNRKPITATGAHQQQDQQQQLQSQHQRVIFKHKTGDDDDEEGNDDDQLLLLDDGCGGGGGGGSDSNGCGGGSGGGASTAAAAAAAATIKTSTMKIRIPEVACTICGARFTDQEMFSKHIEKHEKDLYVDDPLAAMFDDGPADAGQFQVERQNENGEYACDLCAKTFPQVIALKVHRKWHFRGDSKQNPTIDGEATTLNSNNNNNNSLSSSSMLHLRELHAVGLMPNQQQHQKQQQLQLQQQQQHQQQQRSSSKSMKRKRELKCEYCASTFISNNNLRRHMYELHKHEVSNLPEPPVIEVDEPLKCRRCDNLEFETKELWIEHKMADAKVVRPFCPFQWGCDLCGEYLSRKEKLLNHIHNHLKEDVIVPVATTKPLPKTPAATTTATALKAKETAAATVATAATSTAAAAKVKTTTSAAAVAAATNDLKGNKQQQRRDQVEAEAKMEMEMETETEANDDVKLAKASNHSDMDDDESGDSGGDDDEGASTSADDDADADDDDDDDDDDDDDDEDDEDDDDDDEGDIDDEDDDDGDDEDVGENVVAQQMQLQQPQSANTKKNNSTIVDNDDDDDGDDLIEEVIDEDGIVVEQLDDDDDDNDDNNGGGDHDDDDDDDDDDIDEDDVDVDDDDDDDSNSMERQQQQPRRLNFNYSRTTNNNSDRLNGDSSGNGGKQETVDTGGGEEVDDMNTDDDDDDGDDDGDAVGEAMTIDDIIEEDDGVDDDDDDVVGVGGGVVEDDDDNDDNDDDVGDGDGDGDDEDMDEDDDDHDHDHRNVVGNGVDRDDRTTSSTSESESTTTTISHSTTGSSTSTSTSTSSKSNSTSSSSKSTNNNNNNSNSNKTKTKKSSLEATKTTTANAATGSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01325809;
90% Identity
-
80% Identity
-