Basic Information

Insect: Scaptomyza caliginosa
Gene Symbol: -
Assembly: GCA_035044725.1
Location: JAWNNR010000879.1:104508-123583[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 6.6 4.3e+02 1.6 0.5 2 23 1045 1069 1044 1069 0.79

2 9 0.011 0.72 10.3 0.1 1 23 1075 1098 1075 1098 0.96

3 9 0.052 3.4 8.2 0.5 1 23 1103 1126 1103 1126 0.92

4 9 0.00033 0.021 15.1 0.9 3 23 1325 1346 1323 1346 0.92

5 9 0.035 2.2 8.8 0.8 2 23 1355 1376 1354 1376 0.97

6 9 0.19 13 6.4 0.4 1 23 1383 1406 1383 1406 0.96

7 9 9.3e-06 0.00061 20.0 0.8 1 23 1412 1434 1412 1434 0.97

8 9 8.3e-06 0.00054 20.1 0.6 1 23 1439 1461 1439 1461 0.99

9 9 0.00011 0.0072 16.6 4.9 1 23 1467 1489 1467 1489 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	6.6	4.3e+02	1.6	0.5	2	23	1045	1069	1044	1069	0.79
2	9	0.011	0.72	10.3	0.1	1	23	1075	1098	1075	1098	0.96
3	9	0.052	3.4	8.2	0.5	1	23	1103	1126	1103	1126	0.92
4	9	0.00033	0.021	15.1	0.9	3	23	1325	1346	1323	1346	0.92
5	9	0.035	2.2	8.8	0.8	2	23	1355	1376	1354	1376	0.97
6	9	0.19	13	6.4	0.4	1	23	1383	1406	1383	1406	0.96
7	9	9.3e-06	0.00061	20.0	0.8	1	23	1412	1434	1412	1434	0.97
8	9	8.3e-06	0.00054	20.1	0.6	1	23	1439	1461	1439	1461	0.99
9	9	0.00011	0.0072	16.6	4.9	1	23	1467	1489	1467	1489	0.99

Sequence Information

Coding Sequence: atgAGTGCCAACAAGCGACGACgtagctacagcaacaacagcacagctGATCAGGAAGTTCAAGGGGTAGAGAGAATGCCAGCAATTGATATGAGCCGCTTGTGCCGTTGCTGCGGCAAAGGCGAATTGGAATTGCTCAAACTGTTCGACGAAGGCGACGTGACGTGCAATCAAACGACGACACCACAGGTTCCAATGCAGCCAGCGCTATTTCGCCGACGCAAAACGATAATAAGCGAAacggcacagcaacaacagaatccacagcagcagcagcgtaaaATAGATAATCCTGTGGAGTATGCGCTGAGCAGAGCGCACAACAGCATGGACATTGTATTGGAAGAGATGATCATTTGGACACTCAATATCTCACGTGACGATGGCATGCCGCAGCAGATTTGCCGCCAGTGCAAGGCACAATTCATAATGATTGCGAAATTCCGTAGACGTTGTATCCGAGTGCAGCAACGTTTACAGGAATATCTCCAAGAGATTGTCGAGCACCAGTCACAGAAGGAGCAGCCAAAGACGCCGGTGGCCAGTGAAACGCCTGCAGACGATTATATGCATTTGCCGGAAACACAAATGGAGCGCAAGCGTCGCCTGGTGCCAAACACAGATATCGAATTGCTGCCACCCAAGCAGGCCAAGACTGAGGCCGAAGTCCAACAGCTGTCCTCGACGTCACGACGACGTTCTCATATGCGTCTACGCAACAAACGCCTTGGCTCCCTGCCAGCTAGCAGTAATGAGACAGAGACTGAAGCGGAAACAACAAGCGTTGGCGGCCAGCTGCCGCAGTTGGAACAGTGTGCCTTGCTAATCTCTGCATCGCCGTTGCGTACCAAAGCGGCACGCAAACAACACTCAGATGCATGCTCCATGGCAACGGAGCTCGTTGTGCTAAAGGCAGCAAATTCATCAATAGAAACAACCGGCGAATCGGGTCACACTTCACCGGAACAGTTGAGTGATTTGTCTGTGGCACCATGTCTGGGCTTTGACAacgatggcagcagcagcagcagcagcaccacatcTAGTTCGACCACAGTCGGCGGCTCACCACAGGCACAAGATCACAATAATATTAAGTTGAAATTCCCACCAAAATCCCGTGTTGTGCGAGTGCATAGAATGAGACGTGTGCAGCAAAAGAAGACCAAGGATGATGCTGAAGATGAGCTAGTGTTAGATAGTGTAGTAGTTAAGGAGGAAGCGAAGACAATTGATAAcctgccaaacaacaacaagaacaacaacaacaacagcagaagcagcagtagcagcacgACTGCAAGTTCCACATCTGGCATAGACATAGACAATCAAACCCATGAGAAGGAGGAGGGGGAGGAGGAACCGAATGAGCAGAAGCTGGAGGAGAACATATCAAAAGAAAATCGACAGCAATCGCTAACGCCAGAGGTGCCAGCCATCAAATGCGAAGTGGAAGTGGGTCAATCGTCGGAGCTAATAGTCAGCATACCGTTAGATGCGCTCGGCGAGGATCTGCAGCGTAAGCTATGCAGCGATGCCGAGTTGGAGGCGGCAGAGGCGGAAACGAATGATTTGGTGACAAAGCCATCGGACGATGGAGAGAGTAAGGAGCCAGTTGAAGCCGACGATGTGAATAACAATGAGAATGGTGAGAATTTTTGCCAGAGTGCTACAGCAGATAGCTTCAATGCTGCTGTAGCACTCACAACCAAACAGATTGAGGCGGAACCAAATGGAGGAGATAATAGACAcaacgataatgatgatgatgatatgaAATTATTGGAAAGTCTAGCTAATCTACAACCGAtacaggagcaggagcaacagcaacagcaacagatacaTATAGCAGCCGCTACTAGCAATGCCAATTCCATGGATTTCTTAGCTGAATTCGCGACGCATTGtgaaaagtcaataaaatcaGAGCAACCGGATGCAGTGGGACAAGCTGAGCTGGCGGTGGCCAATCAGCAGCTGAAAGTGGAAATGAACGATAGGGAGACTACATTGCATGGCATACTCAATGAGATGCAAGATGAGCATCTCTATACGCCTATCTGTACGCCCATCGATGAGTTTCTAACGCCAGCTGATTATGCACCACCAACGCCAGCATATCCTTGTCTCTATAAGCCAACTAGCCAGGAGTTGCTAcagaaccagcagcagcagcagctgcaacagcaaaaggagATCAATCTATTTGATGACAGCACTTTTGGCAATGAGCTGATTGGCTTTCAAAACAATATGCCCTGTTTTGagaaaatagaaacaacaacgtcGGAATCTTTGCAAATGCAGCAGAGTTTGCATCTGGAGCTTAATCAGTTATTAAATGAATTGCAgccagcacagcaacagcaacagcaacaacagcaacagcagccactacaacaacaacaacagcagcagctgcagcaggaaaCTGTCAACTATGAGCCACTGtatcaaacagcaacaattccagctcataccaacaacaacaacaacaacagcagcagcaacaaattgcagatCATAGAAATGACGCCACAAGTGGCACTTTGGCACGCACAGCAGTTGCAATGGTCTACTGTTGGCGGCCTGGAAGCAATTAAGACAACGCCCAGCCTGGATAATCTAGAAAGTgtcaacggcagcggcagcggcaacaacagcaacagcaacaataccaCCTACTTCATCAATGCCACGGATATctatcaacagcagccgcagcagcagcaacagcagcaacagcaacaggcgaCTGACACTTATGCTCTGCTTGACAGCAATGACAACTATGtgctgcagcaacatcaacagcagcagcaacagccccatcaaccgcagcagcaacagcaacccaTAATGATACTTATACAGCAGCCAGAGTTGCAGCAACCGGTGGCATCAGCCAGCAATCCACAGCAGCCGCCATTGCACATTAGCTACGGCAATGAGCTGCACTcttatcaacagcagcagcaacattcacTTTCACATACGCAAACTTatccaccacaacaacagcagcaacaacaacaacaacaacaacatcaacaagtaCAAAATACAGTATTAGGTTTAAGCAATGCTCCAATGATGCCACAGCAACGTGGTCGTCCGCCCACGCTCAAGTGTCGCTATTGCCAAAAGGGACCACGTTTCTCAAACACCCGGGAGTATAGTAATCACATTATTGAACTGCATCCAGCCGTTGCGCCATTCACCTGCCCCCTCTGTCCATTGGCCTTTGCGGGTCGCAGCAAACGTAATCAGCACATTCTCAATAGCCATATGGTGCAGAAGTTTCAGTGTGGCCAATGTCCACAAATGTTTCCCTCGCAACGTGCGCtcgattttcatttgcaacgTTTTCACATGCCGCTACTCACGCAGCCGACAGCCTCAGCCTCaagtgctgcagcagcaacaaacgctGGCGTTCGTCTAGAGGAGGTACAACTGAGCATtgcaaccaacagcaacaacaacaacgatcaacagcgacagcaatcAGCTTCCCATATGCCGGTATTGGCAAGACAAGCAAGTCCAACCCGTCCACGCAGAACGCGCATACTGTGCTGTCCGGACTGTGAGGACTGTTCAACGTCCGGTGGTCACTGGCATGGCGGCAATGTACAGTCGTACGAGGAGCTGCATCCAGTGCAAGCACCACCGACTGCTTTGACACCGCCATCGACACCACATATAACGCTGCCATCGCCAGAGCAATCGGAGCCCGATtcaacaacggcaacattgCGGCAATTTCGTAAACGTTGcactacgacaacaacagcagcaaaagcaacagcaacagcaacaaccaccacaacaTCGGCAACATCGGCAACTTCAATGTTAACAACTGTctcgccatcgccatcatcatcaccatcatcatcgaCCATGGTCGAGACGAGCGgcacacaacaaatgcaactgggCAAACTGCATGGCAGTCATCTGTGTGTGATTTGTGACAAGAGTTTCACCAACATCATTGCACTGCGCAAGCATCAGCAATTTGCCCACGATTCGCAGACAACGATGCCATGGGTTTGTACGATCTGCAAGCGGGGCTATAGGAAACGCATCGATAGGGATAATCATATGAAATCGCATGAGCCAAAGGGTCGACCCTATGAGTGCAATGAGTGTTTGGTGCGATTTCCCGAATTCAAGCAGCTGGCCCTGCACAAATTCACCGTCCACAAACTGATTAAGCCGCATACCTGCGATGAGTGCGGCAAGCAATTTGGTACGGAGAGCGCCCTGGAGACGCACATTAAGTATCATGGTGTACGCGGCTTCCAGTGCAAAGAATGTGATGAGGCATTCGCCTATATTAAAGATTTGCGCAAACATCGGCGCATTCACAACTGTAACTTATTTTACAAATGCGATTATTGTCCTCGCACCTTTCAACATTTTACAACCTATCGTGCACATATGAATACCCATCTGCCGCTAGGCGTATTCCTCAACGACAAGATGCCCAGCAGTGTGTGCATCAAAGCCGAGAATCCAACCAACAACGACGAATCGCAGATGCCATTGACGCCGCTTAGCAATTGCACTGGCAACAGTGGAATCGATGATTGTCCCGGGTCTGTGGAAATGGTTGTGGAGAGCAGTATGTCAGCACCATCGTTGGACATGATTGTCGAGACGCCATAA
Protein Sequence: MSANKRRRSYSNNSTADQEVQGVERMPAIDMSRLCRCCGKGELELLKLFDEGDVTCNQTTTPQVPMQPALFRRRKTIISETAQQQQNPQQQQRKIDNPVEYALSRAHNSMDIVLEEMIIWTLNISRDDGMPQQICRQCKAQFIMIAKFRRRCIRVQQRLQEYLQEIVEHQSQKEQPKTPVASETPADDYMHLPETQMERKRRLVPNTDIELLPPKQAKTEAEVQQLSSTSRRRSHMRLRNKRLGSLPASSNETETEAETTSVGGQLPQLEQCALLISASPLRTKAARKQHSDACSMATELVVLKAANSSIETTGESGHTSPEQLSDLSVAPCLGFDNDGSSSSSSTTSSSTTVGGSPQAQDHNNIKLKFPPKSRVVRVHRMRRVQQKKTKDDAEDELVLDSVVVKEEAKTIDNLPNNNKNNNNNSRSSSSSTTASSTSGIDIDNQTHEKEEGEEEPNEQKLEENISKENRQQSLTPEVPAIKCEVEVGQSSELIVSIPLDALGEDLQRKLCSDAELEAAEAETNDLVTKPSDDGESKEPVEADDVNNNENGENFCQSATADSFNAAVALTTKQIEAEPNGGDNRHNDNDDDDMKLLESLANLQPIQEQEQQQQQQIHIAAATSNANSMDFLAEFATHCEKSIKSEQPDAVGQAELAVANQQLKVEMNDRETTLHGILNEMQDEHLYTPICTPIDEFLTPADYAPPTPAYPCLYKPTSQELLQNQQQQQLQQQKEINLFDDSTFGNELIGFQNNMPCFEKIETTTSESLQMQQSLHLELNQLLNELQPAQQQQQQQQQQQPLQQQQQQQLQQETVNYEPLYQTATIPAHTNNNNNNSSSNKLQIIEMTPQVALWHAQQLQWSTVGGLEAIKTTPSLDNLESVNGSGSGNNSNSNNTTYFINATDIYQQQPQQQQQQQQQQATDTYALLDSNDNYVLQQHQQQQQQPHQPQQQQQPIMILIQQPELQQPVASASNPQQPPLHISYGNELHSYQQQQQHSLSHTQTYPPQQQQQQQQQQQHQQVQNTVLGLSNAPMMPQQRGRPPTLKCRYCQKGPRFSNTREYSNHIIELHPAVAPFTCPLCPLAFAGRSKRNQHILNSHMVQKFQCGQCPQMFPSQRALDFHLQRFHMPLLTQPTASASSAAAATNAGVRLEEVQLSIATNSNNNNDQQRQQSASHMPVLARQASPTRPRRTRILCCPDCEDCSTSGGHWHGGNVQSYEELHPVQAPPTALTPPSTPHITLPSPEQSEPDSTTATLRQFRKRCTTTTTAAKATATATTTTTSATSATSMLTTVSPSPSSSPSSSTMVETSGTQQMQLGKLHGSHLCVICDKSFTNIIALRKHQQFAHDSQTTMPWVCTICKRGYRKRIDRDNHMKSHEPKGRPYECNECLVRFPEFKQLALHKFTVHKLIKPHTCDECGKQFGTESALETHIKYHGVRGFQCKECDEAFAYIKDLRKHRRIHNCNLFYKCDYCPRTFQHFTTYRAHMNTHLPLGVFLNDKMPSSVCIKAENPTNNDESQMPLTPLSNCTGNSGIDDCPGSVEMVVESSMSAPSLDMIVETP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -