Scal006075.1
Basic Information
- Insect
- Scaptomyza caliginosa
- Gene Symbol
- topi
- Assembly
- GCA_035044725.1
- Location
- JAWNNR010000313.1:2966974-2969572[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.4e-05 0.00088 19.5 1.2 2 23 224 245 224 245 0.97 2 10 0.0013 0.084 13.3 0.9 2 23 273 294 272 294 0.96 3 10 0.0036 0.23 11.9 0.1 2 23 356 377 355 377 0.94 4 10 0.45 29 5.2 0.1 1 22 383 404 383 404 0.93 5 10 0.02 1.3 9.5 1.1 1 22 424 445 424 448 0.90 6 10 4.6e-07 3e-05 24.1 1.9 1 23 512 534 512 534 0.95 7 10 0.00012 0.0078 16.5 0.7 1 23 540 565 540 565 0.97 8 10 0.4 26 5.4 1.7 1 23 571 593 571 593 0.88 9 10 3.4e-08 2.2e-06 27.7 0.4 1 23 599 621 599 621 0.99 10 10 0.00065 0.042 14.2 1.2 1 23 627 650 627 650 0.95
Sequence Information
- Coding Sequence
- ATGGATTCAAGTTTGGGTTTTTATGATGATGGTAATCTTGTAATGGCTGAGTTCGAGCTCGATGGCGATATGGTGTTGGATAGCAACGCCATACAACCGGGCGCAACTGTGCTCATGTCCAATCCAAGCGAAGGTGGTGGTCTGGTCAGTAACGATGATCTGGCCCAGCTCTTTGACTTACAGGACGAGGTGCAGTTGACCAACGAACAGGTTGTTGAGCGCACAATAGTGGAGCCAAGCTTGATCGAGTTAGTGCAGGAAGTCGATGGCAACTCGGACTTTGATCCGGAAGCCGAGGAGCAGAAATTACGCGAGTTCTTATCGGGCGTAAAGCTTGATCCATTGCCAGAAGTGATACCGCCAGCAAATCCTGGCCCATCCGTACGCCTTGTCATGTGCTCCAATTGCAATGGCATATTTGATACGCCCGCATTTCAACATCACTGCTGTGAGTTCGATGCAAATCAGAAACCGATAACAACGCAGCAGGTGCTGCCAGAAGTGGAGAAAAAGGTGGCGTTGCCACCAAAGATACCAAACAGCGAGCGCATCATTGTCGAGAATCAGGTGCGCATGCGTCGCTATATGAAGGATGAGCTGAAGTATGATTTGGAGGCTAGATGCAACACGGCCAAGGCCAGGGAGTCAACGGCTGCCAAGGGATCCAACGAGTGCAGCATCTGTGAGCGCAAGTTTGTTCACTCCTCTGGCTTGGTGCGTCACATGGAGAAGCATGCTCTCGATCTAATACCCACACAGCCAACGACGCAGCATCAAAACGCGTCCATATCAAAACACGGCATCGTTGTAGTacttaaatgcaaacattgtGGACGGGTTTTCTTTAACGTTAAACAGGCGCTGGAGCACATCTTAGTGCATGAGACTGCTACTGAGGAGATAATACCAAAACATCTTGTTGAGGACAAGATGAAATTAAAGCAGCAGCTCAAACAGTTCCTGGTCGAGGCGCCACAATTGGTATCGATGGCGGGCCAGCTAGAGAAGACACCACTAAGGCAGCTGGACGATAAATTTAAAAGTCATGTGCTTGGCAATGTGCTTCAGTGCGAATTTTGTGACTACATCTTTGCGGATGTCGGCTCGCTGTTGCGCCACTCGGCTAGTCATGTGCCAGAGCGACGGTTCGAGTGCAACGCTTGTGATCAGCGTCTGACTACCGCCAAGGAGGCAAGTGCTCACTACCAGACTGATTGCATCTATATGCGCGAAGAGCTCAAGCAGCTGCCAACACATCCAGTTCgcttatatgtatgcaatgtGTGCCAGCAAAAGTTTGCTAATCTGGAAGTGCTTCTGGAGCATCGCTACACTTGCTTGCACTTCTTTCCGCGTCTCAGTGGCACCGGCACTCGAATGATGTTTCCCTGTGAGTTCTGTCCAGCTAACTTTTTGTCTGCCAGCGAAATCCCAGCTCACTACGAGGAGAAGCATCTTAATAGGAAGAAGCGTGACAAGGAGCAATTGCGCAACAACTCTAATCCATCGACGTCCAAGACACGATTACGCCAATATCTGTGTGACATTTGTGGCAAATCCTACACCCAGTCTAGTCATTTGTGGCAACACCTTCGCTTTCACCAGGGTGTAAAGCCATTTGTTTGCCCAGAGGAGAATTGCGGACGCAAGTTTACCATACGTCCCGATCTCAATGATCACATACGAAAGTGCCACACTGGCGAACGGCCATATCATTGTCTGGTTTGCGGCAAGCGTTTTCTTACTGGCTCGGTCTTTTATCAGCATCGACTTATCCATCGTGGTGAGCGACGTTATGAATGCGAGGAGTGCGGCAAGCGATTTTATCGAGCCGATGCATTAAAAAATCATCAACGCATTCATACTGGCGAAAAGCCATACGACTGTCCATTTTGCACGAAGACTTTCCGACAGCGCGGCGATCGGGATAAGCATGTGCGGGCGCGTCATTCGCACCTGGATGAGAATGCACGTTTGATGATGCGTTTGCAGAAGTTTGAACTGGAACAGGCAGCTGCGTTGAAAGCGAAACAAATGCAAGAGGTAGGCATTCAATATTTGATGGAGTCAGGGGAAGCTATGTCTGCTCAATCGGGCGTATCTCCGTCAGCACATGAGCCACAGTTTGATTATAGTGAATTTGCCGAAGAATCTGAACTTGTATCAATGCCTGGTAACAATGACGAACAGGATATACTGTCGTATGCTGAAGTTGAGGAAATAGAAACAAATGAAGCTGCACCGTTTCAACTggaaaacaatgaaaacgtCAAGGTTGTCGTGGTCGAAAATAGCTCTTCCCAACCATTTTACTTCTAA
- Protein Sequence
- MDSSLGFYDDGNLVMAEFELDGDMVLDSNAIQPGATVLMSNPSEGGGLVSNDDLAQLFDLQDEVQLTNEQVVERTIVEPSLIELVQEVDGNSDFDPEAEEQKLREFLSGVKLDPLPEVIPPANPGPSVRLVMCSNCNGIFDTPAFQHHCCEFDANQKPITTQQVLPEVEKKVALPPKIPNSERIIVENQVRMRRYMKDELKYDLEARCNTAKARESTAAKGSNECSICERKFVHSSGLVRHMEKHALDLIPTQPTTQHQNASISKHGIVVVLKCKHCGRVFFNVKQALEHILVHETATEEIIPKHLVEDKMKLKQQLKQFLVEAPQLVSMAGQLEKTPLRQLDDKFKSHVLGNVLQCEFCDYIFADVGSLLRHSASHVPERRFECNACDQRLTTAKEASAHYQTDCIYMREELKQLPTHPVRLYVCNVCQQKFANLEVLLEHRYTCLHFFPRLSGTGTRMMFPCEFCPANFLSASEIPAHYEEKHLNRKKRDKEQLRNNSNPSTSKTRLRQYLCDICGKSYTQSSHLWQHLRFHQGVKPFVCPEENCGRKFTIRPDLNDHIRKCHTGERPYHCLVCGKRFLTGSVFYQHRLIHRGERRYECEECGKRFYRADALKNHQRIHTGEKPYDCPFCTKTFRQRGDRDKHVRARHSHLDENARLMMRLQKFELEQAAALKAKQMQEVGIQYLMESGEAMSAQSGVSPSAHEPQFDYSEFAEESELVSMPGNNDEQDILSYAEVEEIETNEAAPFQLENNENVKVVVVENSSSQPFYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01328073;
- 90% Identity
- -
- 80% Identity
- -