Sleb009203.1
Basic Information
- Gene Symbol
- pnr
- Assembly
- GCA_003285725.2
- Location
- NW:12241766-12248899[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4 9.7e+03 -4.1 0.1 1 5 228 232 226 236 0.60 2 2 9e-17 2e-13 49.3 2.5 1 35 702 735 702 736 0.98
Sequence Information
- Coding Sequence
- atgtgTAATTTACCACTTAAATATCGTCAAGTTTGTCGATTGTGCCTCACATTGGTAAATGAGTGCGAAATAACAAAACTTCAAATATATAGTTCGTCACCGGTGTACTCCAATGTGGACTCCTTAACTTTAACCCCAttcaatgaaaaaataaagcagtgcaaatgcaatttaacaGAAAGttcaacaaaatgtttaaactCGAATGAATGTAGTTGTGATAACCCACTATCAGTAGTTGTGACCAAACATGAAGATGAAGTGGACCCTAGTGAACCATCAGAAATTCATACAAACTTTTACACACCGAATGTGCCTTCTAACGTTGCTcattcgttttcattttctaacaaaaatttattggaACGGCAAATGACAGTCTCTTCAGTATTGAAATTGCGATCATCGCCCACGCAAGTCGTGCAACAACAGGAAACAAAGGAATCATGTGAAGTCAGAAgcacaaaatttcaattagaaAACGATTTTCCAAAGAGAGAACAAGCTATTGGTGAAAATAATggtaaatcaacaaatacaaGACGATCTAATGAAAACAGTGGCAATGTTTTTATGGAGGAGGAAGAGCACAGTGATGATTCATCACCACACATTACAATTCAGATACTCAACTGTCTCTCTATTAAGcCTTTGCCGAATGATGGATTTCCCACCGTCATCTGCCGAGATTGTAGAGCCAAACTTAAATCTTTTTGGAAGTTTCGTTCAATGGCTCTTAATTCACATGAAGCTCTGAAAGAATTTCTAACAGCGACGGAATGCTCTAATGTTGACGCGGGAACGCTAGAAATGAAACTGGACACAATCTTGAAATCTTCATCTGAAGCCATAGCTGCGAAGGCTCTTACCGAATTAAGCAAATCTTCAAAAAACATGTTTACCAACTCACAGTTTGATGGAAGCTTTAACAAAACCCACAACGATCGGCTTCAAAATGAAATCacgaaaatgaatgaaattcgAAATATTCAAACGCCTCCATTATTTCTAAACTCATTCAAATCACCAACAGCCTTATTAAAACCTCCTTTaagtaatattaaaaataaagaattcaCTGTCCAAGATATTTTTTCGTCGGTGTCTAACGATAGAAAACccgaaaaaatgtttgaattgGATAGGGCTGCAGATAAAAAAGATTCAGAAAATgaacaatataaaaacatgCAACAGCAACTAGAGACTGCCGCAGTCCTTATGGATATAAGTAAAAAAATAGTTATTTCACCACCTTGCTCGAACCCCCAATCTCCAAGTCTTTCTGCACAGGCAGAAACAAGTATTAAGAGTTCTGTGATAAAATCAAAACGTCcatcaaacaaaaatgaatttcaaGACGGCGTGGAAATAGATCTATccatcaaaaaacaaaaatctgaTTTCTTAGATCCACGGAACTTAGTTCCAATACATCACACGAGTCAGCCTCCAATACTTAAAATCAAAGCAAAATCGTCAAGACCTGATGATCGAAATAATGACAGTATTAATATGAATGAAGTCGGGCTGCCTAGTTTCAAAGTTAAAACATCAATAATAGAAATGGGTAAAGGCCGAGAAACTTGCCTATCTGATTCTGAGGATAGCTCTGATTCAAACAAATTGGAAATGGATATTGCATCGTCGGTTAACGAGAGGAAAACGCCCGACAGTATAAATTCAGATCACGCAACAGATGCTGCTACTACTCAACTCTGGCAAGCGTTGGCACGATCAGCTGCTAAAAGCAAAGAAGAAACTCAAGCTAGTGAGCTATTACGAAACATGATGAGTCACCCTTTCGTGTTTTCGGTGCCACCAACAATTTCAATGTCAGTATCAAATGTACCTGATGAACCTATGGGTCTTTTGAAGGATTTCTCGGAGGCTCAACTGAACAAAGTTAAAACATGTAGAAGAAAACAAAGTTTTCCTACCAAAACAGATTCTGGAGAAACGGCAGGCGCTAAAGGTGCCGATGTGTTTCCTAGCTTAAAGTCGACATGCAGTGCAACTCTAGAAGCTCAAAaggagaaagagaaaaaatattttaaaagtaagaATACTAACGTTCTACCGGGTACGCAAAAAGATATGTGTTGTTCAAATTGTGGTACTCTCACAACAACCATTTGGAGGCGAAGCGTTAGAGGAGAAATGGTTTGTAATGCCTGTGGATTGTACTTTAAACTTCACGGCGTCAACAGACCCCATTCGATGAGACGTGACACTATACACACCCGGCGCAGGCGTCCAAAAGAATGCGAGAGATCCAAAAAACgAACTAAAATGCCGTGCTCTTTGGGTGGGGAACATAAAATTGAAGGCATAAACATCTCTATGGAATCTAAGCAGATGGAATGTTTGCCAACCTCTGAACCGCTCAGTGTTTCAGGACTAGTATTAGACagATACAAGATCCAAATGtgtgaagaagaagaagaagcaagCGCTTCATCAGCGTTAAAGAACGTGTTTACAAGACGAAAGAAGACACAATGTTCACCGGCCTACAGCGATGTCTGCGAAGCCGAGGAGCTGTCAGTACCACTTAATCTTGTATCCAGTGAAAATAGCAAGTTAACATAA
- Protein Sequence
- MCNLPLKYRQVCRLCLTLVNECEITKLQIYSSSPVYSNVDSLTLTPFNEKIKQCKCNLTESSTKCLNSNECSCDNPLSVVVTKHEDEVDPSEPSEIHTNFYTPNVPSNVAHSFSFSNKNLLERQMTVSSVLKLRSSPTQVVQQQETKESCEVRSTKFQLENDFPKREQAIGENNGKSTNTRRSNENSGNVFMEEEEHSDDSSPHITIQILNCLSIKPLPNDGFPTVICRDCRAKLKSFWKFRSMALNSHEALKEFLTATECSNVDAGTLEMKLDTILKSSSEAIAAKALTELSKSSKNMFTNSQFDGSFNKTHNDRLQNEITKMNEIRNIQTPPLFLNSFKSPTALLKPPLSNIKNKEFTVQDIFSSVSNDRKPEKMFELDRAADKKDSENEQYKNMQQQLETAAVLMDISKKIVISPPCSNPQSPSLSAQAETSIKSSVIKSKRPSNKNEFQDGVEIDLSIKKQKSDFLDPRNLVPIHHTSQPPILKIKAKSSRPDDRNNDSINMNEVGLPSFKVKTSIIEMGKGRETCLSDSEDSSDSNKLEMDIASSVNERKTPDSINSDHATDAATTQLWQALARSAAKSKEETQASELLRNMMSHPFVFSVPPTISMSVSNVPDEPMGLLKDFSEAQLNKVKTCRRKQSFPTKTDSGETAGAKGADVFPSLKSTCSATLEAQKEKEKKYFKSKNTNVLPGTQKDMCCSNCGTLTTTIWRRSVRGEMVCNACGLYFKLHGVNRPHSMRRDTIHTRRRRPKECERSKKRTKMPCSLGGEHKIEGINISMESKQMECLPTSEPLSVSGLVLDRYKIQMCEEEEEASASSALKNVFTRRKKTQCSPAYSDVCEAEELSVPLNLVSSENSKLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -