Basic Information

Insect: Scaptodrosophila lebanonensis
Gene Symbol: -
Assembly: GCA_003285725.2
Location: NW:1608990-1612364[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.4e-05 0.0015 18.5 0.5 1 23 183 205 183 205 0.99

2 15 1.8e-05 0.0011 18.9 2.3 2 23 213 235 212 235 0.96

3 15 0.081 5 7.4 0.1 2 23 268 289 267 289 0.96

4 15 0.00016 0.01 15.9 1.5 1 23 374 397 374 397 0.97

5 15 0.063 3.9 7.7 0.1 2 20 405 423 405 425 0.92

6 15 0.047 2.9 8.1 1.1 1 23 434 456 434 456 0.96

7 15 0.0055 0.34 11.0 2.7 3 23 465 486 463 486 0.92

8 15 0.0015 0.093 12.8 3.8 2 23 494 516 493 516 0.96

9 15 0.0021 0.13 12.4 0.1 3 20 544 561 542 562 0.94

10 15 0.0028 0.17 12.0 2.3 1 23 609 632 609 632 0.97

11 15 0.27 17 5.7 0.2 2 23 670 692 669 692 0.93

12 15 0.00051 0.031 14.3 1.1 2 23 714 736 713 736 0.95

13 15 0.00077 0.048 13.7 0.5 1 23 750 772 750 772 0.95

14 15 0.00028 0.017 15.1 2.2 1 23 778 800 778 800 0.99

15 15 1.2e-06 7.5e-05 22.6 1.0 1 23 806 828 806 828 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.4e-05	0.0015	18.5	0.5	1	23	183	205	183	205	0.99
2	15	1.8e-05	0.0011	18.9	2.3	2	23	213	235	212	235	0.96
3	15	0.081	5	7.4	0.1	2	23	268	289	267	289	0.96
4	15	0.00016	0.01	15.9	1.5	1	23	374	397	374	397	0.97
5	15	0.063	3.9	7.7	0.1	2	20	405	423	405	425	0.92
6	15	0.047	2.9	8.1	1.1	1	23	434	456	434	456	0.96
7	15	0.0055	0.34	11.0	2.7	3	23	465	486	463	486	0.92
8	15	0.0015	0.093	12.8	3.8	2	23	494	516	493	516	0.96
9	15	0.0021	0.13	12.4	0.1	3	20	544	561	542	562	0.94
10	15	0.0028	0.17	12.0	2.3	1	23	609	632	609	632	0.97
11	15	0.27	17	5.7	0.2	2	23	670	692	669	692	0.93
12	15	0.00051	0.031	14.3	1.1	2	23	714	736	713	736	0.95
13	15	0.00077	0.048	13.7	0.5	1	23	750	772	750	772	0.95
14	15	0.00028	0.017	15.1	2.2	1	23	778	800	778	800	0.99
15	15	1.2e-06	7.5e-05	22.6	1.0	1	23	806	828	806	828	0.99

Sequence Information

Coding Sequence: atgtgtACTTTAACGTGTCGCACCTGTGTCACGCCCACTTCTAGTCAAGTATACAAGCTCCAGGAAAAGGCGACAAAGCATAATAAAGTTATTTGGGAAATGCTTGCTGATGTCTGCTCCCTAGATCCCAATAATGCACTGCCGCAGCACCTATGCTCCGACTGTTTGCAGCGGCTGCAGGATGCCTATGAATTTGTCCTGCAGGCCAGGCAAGCGAACGACGAGCTGTTGGCTAAATTGGAGAGTTCCTTTTCAGTGGAACAGTTTATGGATGTTAAAGTGGAGGACAATAAGCCGATCCCAGACACAGATCAAGAGGAGCTGCCGAAATACACAGAGGGAGACTCAGACAAATTCGATGAGATGCCGCTCAAGGAAAGGCTGCAACTTTTACGCaaacaaagaaattgtaaaacaGCCGAGAGCCCTAACGATCCCTTAGCTAGCGACCTGTCGGAAATATGCGATGGCCAAGTAAAATTGAAAGAATGGAACAATCAAGCAGATTGTGGCAGCCAGAATGAAAGCGCTTTAGTCGGGAAACAATATAAATGCGATCAGTGTGACAAATCCTACTATTGGCCCGCCAGTCTCATATCCCACATGCGCAAGCACACATCTAAAAGCAATTGGCTCACGTGTCCAAATTGTCCGCACAAATTCTATCGCAAGGACAACATGATGGCTCACATGCGAAATAAACATGGTGCGCCCCGCGCCTACAAACGCTCCGGCTCTACACTCCCTAAAGTAACGGAGCTGGACATTAGCCTGTGCCTGCCACATGGCACTAAAAGGATTCAATGCATGCTCTGTTTGCAGAACTTCTCAAAAATTGCCCTGCTGGCCAAACATTTGCAAGCTCACGCCGACCAAGCGGATGAGGTTTGTGTGGCCAGCGAGACGCGTCGCGAAATCGCCTCCAGCTTTTTCGCCGATGCCAACAACGTGGATGAGGCACATCTAAAGCAACGCATATGCGAGTACTTGAACGAGCAGAAGTTCTCGCCATTCTATTCGATAACCAACCAGTCTGGTCGCGAACTGAGTCTGGAAAGCTCCGAGACGGACAGCGATTTTGAGGAGGAGCAGCGGAAAATAAATGCCTTGGCCTCGCGTTACAATTGCGAGCTCTGCTCTCTCAGCTATGCTCGCAAATATCAATTGTTCGATCACCAGCGCCAGCAACACGACTGGCTGGAGGCCCCCAATGTGTGTGCGCGTTGCCAGGCGCGCTTCGTCAATGCCGAGCTCCTGCAGCAGCACCGTACACGGCAATGCAACAACGTTCAGAAGCTATACATCTGCAAGTATTGTCGAGCGCGTTTTCAGTGGCGCCAAAACCTGAGGACTCACTACGCCGTGCACAGAAATAAGAATACTGTCGTCCATTGCTCGCTGTGTGATCGCACATTTCGGGATGCTCGCGGCCTCCACACTCATAATCTGAGCATGCACGCCGACAAGTCCAGCTTCATGAGCTGTCATTGGTGCAACCTGAAGTTCTATAGACGTGACTTTCTGCTTCGACATCTGCAGCGACGGCATGGCCTCAAAGAGCAGTATTTGCCACTTGCCGAAACCCTCCTCGCCGCCACATCGCAGCCAAATGGTCAAAAGCGCATCGCCTGTAAAGTTTGCGATATTAGTTTTACGAAAATGAAGGAGCTGCGCTCTCATTTGCTCTGCAATGCGGCTGCTCATCATAGCTACGACTCCGCCTTGAACTATTCCATTACGAATGCGCAGGGCTTCGAGCTGCATTTGGATGACACCGACACGGACTCTGATGCAGACCAGGATGAGCATCCGGCAGCCGCCAAATACACCTGCTCGCTGTGTCAGGTGCAGTGTCGGCGCATCTATGAGCTCCAGCAACACCAGCGCGCCATGCATCCGTACGATGAGCTGCCATATGCCTGCGGCAAGTGTATCTTCAAGTGCGCTGCCAAGCCCCTGTTGGAACGCCACGAACGCAGTCAGTGCCTTAATGTGGATAAGCAACTGAACTGTGCGCTGTGTAGTTATAAATTTATGTGGCCAGAGAACTTGCAGCTGCATGTGCGTCTGCAACATGCCACTGGGGCGGCTGGAAGTTCTACTCCAGCTCCTGCTTGCGAATCCAGCACAGATCTGTTGCGTTGTCCGCACTGCGATCGCACCTATCAGCTGCAGGCTCGTCTACGAAATCACATACGCGATGTGCACTCCGAGGATGGGCCCAAGAAGGCAAAGGAGGCGCGACTGTTCCTCTGCTCGCAGTGCGGCATCAATTTACGCTCCAGAGGCGAATTGCAGCTCCACACCCGACGCCACAACAACGACAAACCCTTCAAGTGTGATCTGTGCAAGATGGCATTCGTCTCCTTCTTTGAATTGAAACTGCACCGTCGCAAGCACACCGGCGAGAAACCCTATCAATGTACCTTTTGCCAAAAGGCTTTTGCGCGCTCTGACAAATTGCGCGTCCATCAGGCCACCCACAAGGATAAACGCAAATAA
Protein Sequence: MCTLTCRTCVTPTSSQVYKLQEKATKHNKVIWEMLADVCSLDPNNALPQHLCSDCLQRLQDAYEFVLQARQANDELLAKLESSFSVEQFMDVKVEDNKPIPDTDQEELPKYTEGDSDKFDEMPLKERLQLLRKQRNCKTAESPNDPLASDLSEICDGQVKLKEWNNQADCGSQNESALVGKQYKCDQCDKSYYWPASLISHMRKHTSKSNWLTCPNCPHKFYRKDNMMAHMRNKHGAPRAYKRSGSTLPKVTELDISLCLPHGTKRIQCMLCLQNFSKIALLAKHLQAHADQADEVCVASETRREIASSFFADANNVDEAHLKQRICEYLNEQKFSPFYSITNQSGRELSLESSETDSDFEEEQRKINALASRYNCELCSLSYARKYQLFDHQRQQHDWLEAPNVCARCQARFVNAELLQQHRTRQCNNVQKLYICKYCRARFQWRQNLRTHYAVHRNKNTVVHCSLCDRTFRDARGLHTHNLSMHADKSSFMSCHWCNLKFYRRDFLLRHLQRRHGLKEQYLPLAETLLAATSQPNGQKRIACKVCDISFTKMKELRSHLLCNAAAHHSYDSALNYSITNAQGFELHLDDTDTDSDADQDEHPAAAKYTCSLCQVQCRRIYELQQHQRAMHPYDELPYACGKCIFKCAAKPLLERHERSQCLNVDKQLNCALCSYKFMWPENLQLHVRLQHATGAAGSSTPAPACESSTDLLRCPHCDRTYQLQARLRNHIRDVHSEDGPKKAKEARLFLCSQCGINLRSRGELQLHTRRHNNDKPFKCDLCKMAFVSFFELKLHRRKHTGEKPYQCTFCQKAFARSDKLRVHQATHKDKRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -