Basic Information

Insect: Scaptodrosophila lebanonensis
Gene Symbol: -
Assembly: GCA_003285725.2
Location: NW:8150378-8154872[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.7e-06 0.00011 22.1 2.9 1 23 85 107 85 107 0.98

2 11 3.8e-07 2.4e-05 24.1 2.9 1 23 113 136 113 136 0.97

3 11 1.3e-06 7.8e-05 22.5 0.4 1 23 142 164 142 164 0.98

4 11 1.5e-05 0.00093 19.1 0.5 1 23 170 192 170 193 0.96

5 11 1.3e-06 7.8e-05 22.5 0.9 1 23 200 222 200 222 0.97

6 11 0.039 2.4 8.4 0.8 1 23 228 251 228 252 0.95

7 11 0.0041 0.25 11.5 0.2 1 23 257 279 257 279 0.97

8 11 9.5e-06 0.00059 19.7 2.7 1 23 285 307 285 307 0.98

9 11 6.7e-05 0.0042 17.1 4.8 1 23 313 335 313 335 0.99

10 11 0.0047 0.29 11.3 1.1 1 23 341 366 341 366 0.92

11 11 0.27 17 5.7 3.7 1 20 372 391 372 398 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.7e-06	0.00011	22.1	2.9	1	23	85	107	85	107	0.98
2	11	3.8e-07	2.4e-05	24.1	2.9	1	23	113	136	113	136	0.97
3	11	1.3e-06	7.8e-05	22.5	0.4	1	23	142	164	142	164	0.98
4	11	1.5e-05	0.00093	19.1	0.5	1	23	170	192	170	193	0.96
5	11	1.3e-06	7.8e-05	22.5	0.9	1	23	200	222	200	222	0.97
6	11	0.039	2.4	8.4	0.8	1	23	228	251	228	252	0.95
7	11	0.0041	0.25	11.5	0.2	1	23	257	279	257	279	0.97
8	11	9.5e-06	0.00059	19.7	2.7	1	23	285	307	285	307	0.98
9	11	6.7e-05	0.0042	17.1	4.8	1	23	313	335	313	335	0.99
10	11	0.0047	0.29	11.3	1.1	1	23	341	366	341	366	0.92
11	11	0.27	17	5.7	3.7	1	20	372	391	372	398	0.95

Sequence Information

Coding Sequence: atGGTACGCAGCCGACGCTCACTCTCTAAGGAGGATGTGGCCTCGTTGCTTACTGACAGTGGCATCTCGCTGTCCTCACCACCAACAGCAAGGGATTCTACACCCACACCAACGCCTAGCACAGCGAGCAAATGCAAGCGACGCAAAAGCAGCCTCAACAGTTTGCGCGATGCGGAGGCCAGCAGTCAATCAGAAGCGGAGCACTTGCCCAAGAAGAAGCCACGTAAATCGGAGTCAGGCACCCGAAAGCAGCATAAATGCAGCCATTGTGGCAAGGAGTTTGGTGGCAAGACCGACCTGCAGCGTCACATGCTCATACACTCTGACGAGCGGCCGCACAAATGCGAAGAGTGTGGCAAATGCTATCGTCAAGCGGTCAATCTAAAGAACCATATAACGACGGCACATGAGCACAAGAAACAGTTCACCTGTCCCGAATGTCCGAAATCTTTTGCCCTGAAGGAGCGACTGCGCCTGCACATGCGATTGCATTCCGGGGAGAAGCCTTACCCATGTGCACTCTGCGAGAAGCGGTTCGCACGTGGTGGTCAGctgcagcagcacaTGTTGTCACATCATAAGACCAGCATTCAGCAATTTAATTGCACCAAATGTTCAGCTAGCTTCTCGACTAATGCCAATTTGCGCGTGCACATGGAGCGCCATGAGCAAGGCATGGAGCATAGCTGCAGCATATGCGAGTCTCAGTTTCCGAACGACTTGGCCTTGCGCGCACACATCAATCAGGAGCATCACAAACTTAGCCGCTTCGATTGCGAGGTTTGCCACAAAACCATCGAGCCTGATGATGATCTCGCCTCACACATGCTGCGTCATGCCGCTGTCAAGACACACGTCTGCGAGATTTGCAACTCCTACTTCACCCAAAAGTCGCAGTACAATGTGCACATGCGCATGCACACGGGCGAGCGTCCATATCAATGTCGCATCTGTCATCAGACCTTCGCGCACTCGACTGTTCTGAAACTTCATATACGTAAGCACACAGGCGAGAAACCCTTTCGCTGTCTGCTTTGCACGGACGAGGTGGCTTTCTCGCAACTGGCCCATCTCAAGAATCACATGAAGAAAATTCACAAGCAGCAAAAGCCCTATATGTGCCATGGCTGCCATGACTTCTTCAAGATTAAGGTCGAGCTGCAGGCACACGTGGAGCAGTGCGCCAAATGCCAGGCGAATGATAAAGCTACGCTCACGCCCGATTCACAGGCCGAAAAAGATACTCATGCATTAACCAGCATTCGCTTCAATATGGCGGTGGTGCTTAAGAAAATTAGCTCCGCGCAAAAGTTGCGCCAGTTGGGCTATGAAAAGCGTCTGATCGACAATGTAATCATCGCCTCCTTAAAGCTGGCACAGCGACCGGCACATGACGATGCGCAGCTAACACCACTGGCCCGTCTGCGTTTAAATGTCGAGGAATTTCTCAAGTGGATTGTGCCAGCGCCTACAATGCAAAAGTTTCGCGATGAGTTGCTATCCATCGACACGATTCTTGATAAAATTGCGACTATATATATGAAGCAAAAGTAG
Protein Sequence: MVRSRRSLSKEDVASLLTDSGISLSSPPTARDSTPTPTPSTASKCKRRKSSLNSLRDAEASSQSEAEHLPKKKPRKSESGTRKQHKCSHCGKEFGGKTDLQRHMLIHSDERPHKCEECGKCYRQAVNLKNHITTAHEHKKQFTCPECPKSFALKERLRLHMRLHSGEKPYPCALCEKRFARGGQLQQHMLSHHKTSIQQFNCTKCSASFSTNANLRVHMERHEQGMEHSCSICESQFPNDLALRAHINQEHHKLSRFDCEVCHKTIEPDDDLASHMLRHAAVKTHVCEICNSYFTQKSQYNVHMRMHTGERPYQCRICHQTFAHSTVLKLHIRKHTGEKPFRCLLCTDEVAFSQLAHLKNHMKKIHKQQKPYMCHGCHDFFKIKVELQAHVEQCAKCQANDKATLTPDSQAEKDTHALTSIRFNMAVVLKKISSAQKLRQLGYEKRLIDNVIIASLKLAQRPAHDDAQLTPLARLRLNVEEFLKWIVPAPTMQKFRDELLSIDTILDKIATIYMKQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01319189;
90% Identity: -
80% Identity: -