Basic Information

Gene Symbol
Trerf1
Assembly
GCA_003285725.2
Location
NW:5183385-5222054[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.8e-09 2.2e-06 27.3 0.1 2 45 1719 1762 1718 1763 0.93

Sequence Information

Coding Sequence
ATGGCAGCCATTAATACGGTACCAAAGAGCATTCATCTGCCATTGACAAGTCTAAGCACGCCACGTGTGTTGATGTGCAGTGCCTCTGTGGGCACTGAGGGTTCCGTGACACTTCAGCTGAGAGATGCGAGCGCCTTGGATGCGGTAGCTACAATTagcaaatcaacaacaacggccACAGCGGTCAGCCAAACAAATGGCgtcacagcaacagcagcaacaacagtggcaacagtggcaacaacaacgacctcGGCGTCGTCGGCATTAGAAAATGCATTGACCATTGGCTATCCGGATCCGGAAATGTTGGCTGATGTTTTGGGAACCATACAGACAGCCTCGCTCAAAAATAACCACAAtagcgcagcagcagcagcagcatcagcaactcAAAGCAATACAGCGACCGTAAACGTAGCAACAACGACTGGCAGCCATCTCAGCAATCCCAACAAGATAACGATAACGCGACGCACCACAAACGCCAcgagtagcagcaacaaccacattAGCGGTGGTAGCAGTAGCGGCAGCAACAGGATAACTGTCCAAACGGTCTCCACCTCCACAAACACCAGCAGCAAGACAAACACCAGCTACATCAAGAACTGTCTGAttcgcagcagcagctgcagcaataCAGCCACCAATGTCACCACATTGGCGCAGATTatgagcaacagcagcacgaGCAGCGCAGCCAGTCTCCTCAATcagcacaacaataacagcaactgcagcaacagcagcaacttcAGCAACGCCTCATCGGTCGGCAGCAGTGTCAGCAttgccagcagcaacagcaacggcagcagcagcaacagcagcagcaacgacagcacTGTCAGTAGCAGCAATCATAGTTTGAGTTTTAAGAGCAACGGTAAACATGTTCCTGGCGTTAGCgtaacaacaactgcaacaacaactacagcatcCACAGCATCGGCAGCCACAAACACACCAACAGCGGCGGGCAGCGGCGCACCCAAGAAGAGCCGCCCAAAAATATCCTCCCCGACCCGCCACGGACCACAACAGTGTCAGATTTGTAGCAAGATTTTTGGAAATGCCTCGGCGCTGGCCAAGCACAAACTGACGCACAGCGACGAACGGAAATACATTTGTACGCTCTGCTCGAAGGCATTCAAGCGACAAGATCACCTAAACGGACACATGATGACCCATCGGAACAAAAAGCCCTACGAGTGTAAGGCGGAGGGTTGCGGCAAATCCTATTGTGATGCGCGTTCCCTTCGCCGCCACACCGAGAATCATCATGGCGGCATTGTGACGCCCTCGAACCAGTCGCTCTCACCCACCACCAACTCCAGTGGCGGCAGTAGCAGCAGTGTGGCCACCAGCTCGCTAAGCCTCTCTCCGGCTACAGCAAGTGGCGATGCCAGCTCCCCAGATGGCGCCACCTGCATTCGCACCTACATCTCTTCGGGCGGCACGGTCGTGGATGCTGCGACAGGTATCGCGCTTTCCGAGGAGCAAATCAAAGCCATGAACTTGCCCGTAAAAACAGGCGTTACGCTGCTTTCGCCCACAACGTCGACGTCATCGAATGCATCGTCCTCATCTTCGTCGTTATCCTCATCCTCGAGCAGCGGCCCTCTGCTCGCCAGTTCGCCCACTATTACGCTCAGCGATGGCGCCACGCTCGAGGGTGAGGGGTTGACGCGTGAGCAGCTGGACCTCATTAGCAAGATAATGCAGCAGACTAAGCAGACCAGCGCTCAAGTCACCGTGTCGTCCCCAACTAGCGTCAATTCCTACAAGATAAATACGGAGACGGCGCCAACACAGTCCCGACCGCGCACCTGGAACATGCAACTGCTGAACAACAACTCACAAAATGTCACTGTAACTGTTGAGGATGGCGCTGATTTGCTTGCCACGTCCACTGCTTCGCCCGTGGATGTCAAGGATGACGACCTTAGTCAGCAGTTAGTTGCTGCTATTAATCCGCACTTGCTTAATATTGTCAAGATTGAGAAACCTGTCGAGTGCAATCTTTGTCACCGTAAGTTCAAAAACATACCCGCCCTCAATGGGCACATGCGTCTGCATGGCGGTTACTTCAAAAAAGACCCCGATACGAAACGAAATGAGAAGAAGGACTCAAGTGGGCCGCCGTTGCAGACCGCCAGTATAGGAGTGCGTGCGTTGATCGAGGAGAAAATCATTAGCAAGCGCAAAGACATAACTAAGGGTGCCTTCGTAGTTCCTGCACCACCCAGTAGCGTAGCCAACAACACGAGCAACACCATTCGCCGATCAATTAGCGATTTGGAGAGTTTTCTCAACCCCAAAGCCAGTAGCAGCAGCCTAAGTCAGACATTGTCAAGCGGTACAACCACCACAACGGCGGTACTGCCGGCAGCCACCACTATCAAAAGCAGTAACGGCCTGAGTATACAGCAGATTGGTCTTCCCCAGagtattgaaatatttagcAGCCAGAAGCAACAAAAGACGCTGAACTTAGGCAGTGGTGCCAATACCATTACCATCACCACCAACAATGTACCTACTACGGCCACCATGGGATCGTTGGCAGCATTGACAGGCAGTGGTCAGAAGAACGGGGGCGATCCCAAGGACTCCACGCTCATCGAGCTGTTGAAACGGGGCACCCGCATAGCTGTAACTGCCAAGaagacacaaacacagaccCAAATCCAGACTCAGACTCAGAACCAAGCACAAACTCAAACGCAAAGCAGTACAAATTTGCTGATGACCAGCACTAGCAGTGGAGCTACCAATTCAGATCTCTCTACTATAACGACAACCCAAGCTGGGCGACAGATCATTACGAATAATAATCGAACGGTCATAATACCGTCGGACGTGCAGGTGGTCTCCACTAAGACGAAACTGAGCAACATGGGAAGCGTTGTATCCGGGGTCAGTGGCGCACGATCGTCAACGCCTGCTAGCATCTCACTTTCTGATGGTACCCCGCTCTCGCTGACCATTGCGCCCAGCCACGAGAACAATAGCGGTGGTGGTACCGGAGGGGGCGATGTCTACACCGTTACCTACACCTCCGATACATCTGACCTGTTTGATGATGCCGAGGTGTACAATGTGTCCGATACGGAAATGCTACTGCAGACCGTGGATACAATGGAGCTACTCAATGACGATGATGTCTCGCACATCAAAACCGAACATTCCGATGCCGACTTTGCGTTGATCAGCGATGCTGATAACGCCCAACTGGTCAAGCTCGAGCCTGAGTCAATTCACTGCAGTCAGACAACGGCGCTGCCCACCTTCCAGCAATTCCATTCCAAGGAGCTCATTATGCAAAACAGCTCCCAGATCCAGGCCATCGCTTCCatgcgcagcagcagcaccacgcTTAACCTGCCCGCCGACCTCAAACAACAGCTTGGTGTGCTAGCTTCGCCGCTGCACTCACCTTTGGCCTATCCGACACCGCCTTCAAGCCACGAGAACGTGGCGCAATCATCACCTTTTATTGAGGATGCAGCCGCCCAGTTTGTGGACGCCAGCCAAACGTTCTTTGGCGACAAGACGGACTTTTCGCACGTCTACTTCAAGACGGACGATCAGACCCAGCAGGAGCTTAGTGACAATGAGAAAATACTTAAGCTAAAGAGCGTGCTCGAGGAGAGTACTTTCGATTCCTCGATTAAGGTCGAGGATCTACTCAATAGCACAGAAGACGACACTGAGTGTGACTTACGCGAATTCGCAGAGACGAATCTCTCGTTCCTGGATGAGGATCAGGAGTTTCTTAATGATTCCCGTAATGCCACGTCCCCATTGTCCGAATCATTTTTCACAAGTGGCATAGGATCCGCTGACGATGTCAAGCAGGTCCTACGTGAGGTGCTACCAGATGAGAATATACAATTGCAGATGAGCAGCGAACAGCAAGGCGAAAATATTATTGATCTCTACTATCTGCCCGGATTAGGCCTTCAGTCCCAAATGATGCCCAATTCTGAGGATCCATTGCTTTCTTCGTCGCCGCGGGAGTTTGGACAACAGCGACAGCTGCCCATAGCACCTGTGCAGCCGGCGGAACAGCTACCGGAGCCACTCTACCACCAGCAGATgcttcaacagcagcaaacagGTGGACAACCTCAATTAGTAGAGGCTCAAGCGCAACAGCAGGACTTTATGCTGCCACTTACAACTGCTTCGGGAGGAGGATGTTCGGCTACAAATGGAATGCAATTTGGCGCCGTCTCTAATCTTCAGCCCGTACAAAATCAGTCCCAGTTCTTAGATCCCAGCAATCAGCAGCCGATGGCGCTCAACAATCTTTTACAGCCCTTGATATATAGTGGAGGCGGTGCCGTAGTCGGTAGCAGCTTTAGCGATGGTGGCTTGGTCAGTAACATTAAACAAGACATCTCTGACGCAAAGGTCACCTTGCTGCCAGTCGATTGCAATGCCAATGCTAATCGAATCGGTACATCTGGACCTTTGGACAATAGCATGATGTATGTGGCCTGCAATAACAAACCCCTTCTATCGACTTTACCTGCCGTGGCTGTCGCTTCCACACCCGCGCCTAGCGCCACCGTGACGAACTTGCAACCACTTTCCAATCAAACCAATTCCATACTTAAGCGACGGCTGCGACCTAATGGCTCACAGGATGCGCATAATTTCTCCAAATTCCATACGCTTTCGCCTCATCGTTCCAAGCTACGGAAACCATCACGGACGCATTACACCCCAGCGCCGATCCTCAATCCGGACCGTAAAGGCACTGGCTTGTACTGCAATGTGCGCAAGCAGCTTGGTCAGGGGTTGTTCGATGTATTCGACGACGACTTTGGAGATCCTGTAGGACTCGTCGATTTCTCCGATGAGTCCAAGGTAAATTTAGGCTCAACCTATCAGGCACAAATTCCCGCTTGTCGAGCAATTCAAGAATCAGCAGACGAGGTGTTGGGTGCCGAGCTTATGTGGGATCCTAGCGTGCAGACGGACGAAAAGATACTAATGCGCTACATAGATCTCAGCAAGTCTTCAGCCGTGCCCATGGGCAGCCACTCTGAGGAGGTGGCGCtgcaagcgctgctcaaggcTCAAGGCAACTCGGCGGCTGCGGTTCTCACGCTGCTGCAGACCCAATCGAGTGCCTTCCAAATGAAGTGGAATGCTCAAGAGCTGGAACTGTTTCTGCGCGGCTTAGAAAAGCATGGCAAAGACTTTGGAAAAATTGCTAATGAAcTTCTGACAAAGTCCTCGGGGGATTGCGTGCAAATGTACTACTTCTGGAAGAAACTGTGCGTGGACTATAAGGTGTCGCATTTGAAAATGGAACCTGTGACACCCACGACACCGGTGGTGGAGCAGAAGCCCTATGTCTGTGAGATAGCCGATTGTTCAGCGAGCTTCAGTTCCAAGGCGGCGCTGCATGGGCATGTGCGCATTCACGCCTATGGCAgaaacaccagcagcaacaacaatcagcaTGCCACTTCGAACAGTTCCAACGCCCCCAACAGCATCAACAGTAGCAATGCGAACAACAGCTACGCAGGCGCGCCTCTGgccggcaacagcagcaatgcgAGTCAGGCACAAATACACGCTAACAACAGTAGTagcatcatcaacaacaaccacagtagcaatggcaacagtagcaacaacaacaatagcaatgcCAATATTTCCAATAGCGGAGGCAGCAACAGCCATGCTGCCTCCACCACATCCTCCGTGGCAAACAGCCATGCGAAAGAACCCAACAATTCCAACAATGCCAAGGACGGCGAATTCCCCTGCAAGGTGTGCGGCAAAGTCTTCAATAAGGTCAAGAGTCGCAGTGCGCATATGAAGACGCATCGTGTTCAGGATCCCGATCAGTCGCCCAatacaaagcaacaacaacaacaacaacaacagcaacaacagcaacagcagcatcatcaACCATCGAGCTCCAGTTCCAGCTCCAACACGGCGTCCGCATCATTAGTAGCATAG
Protein Sequence
MAAINTVPKSIHLPLTSLSTPRVLMCSASVGTEGSVTLQLRDASALDAVATISKSTTTATAVSQTNGVTATAATTVATVATTTTSASSALENALTIGYPDPEMLADVLGTIQTASLKNNHNSAAAAAASATQSNTATVNVATTTGSHLSNPNKITITRRTTNATSSSNNHISGGSSSGSNRITVQTVSTSTNTSSKTNTSYIKNCLIRSSSCSNTATNVTTLAQIMSNSSTSSAASLLNQHNNNSNCSNSSNFSNASSVGSSVSIASSNSNGSSSNSSSNDSTVSSSNHSLSFKSNGKHVPGVSVTTTATTTTASTASAATNTPTAAGSGAPKKSRPKISSPTRHGPQQCQICSKIFGNASALAKHKLTHSDERKYICTLCSKAFKRQDHLNGHMMTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHGGIVTPSNQSLSPTTNSSGGSSSSVATSSLSLSPATASGDASSPDGATCIRTYISSGGTVVDAATGIALSEEQIKAMNLPVKTGVTLLSPTTSTSSNASSSSSSLSSSSSSGPLLASSPTITLSDGATLEGEGLTREQLDLISKIMQQTKQTSAQVTVSSPTSVNSYKINTETAPTQSRPRTWNMQLLNNNSQNVTVTVEDGADLLATSTASPVDVKDDDLSQQLVAAINPHLLNIVKIEKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDPDTKRNEKKDSSGPPLQTASIGVRALIEEKIISKRKDITKGAFVVPAPPSSVANNTSNTIRRSISDLESFLNPKASSSSLSQTLSSGTTTTTAVLPAATTIKSSNGLSIQQIGLPQSIEIFSSQKQQKTLNLGSGANTITITTNNVPTTATMGSLAALTGSGQKNGGDPKDSTLIELLKRGTRIAVTAKKTQTQTQIQTQTQNQAQTQTQSSTNLLMTSTSSGATNSDLSTITTTQAGRQIITNNNRTVIIPSDVQVVSTKTKLSNMGSVVSGVSGARSSTPASISLSDGTPLSLTIAPSHENNSGGGTGGGDVYTVTYTSDTSDLFDDAEVYNVSDTEMLLQTVDTMELLNDDDVSHIKTEHSDADFALISDADNAQLVKLEPESIHCSQTTALPTFQQFHSKELIMQNSSQIQAIASMRSSSTTLNLPADLKQQLGVLASPLHSPLAYPTPPSSHENVAQSSPFIEDAAAQFVDASQTFFGDKTDFSHVYFKTDDQTQQELSDNEKILKLKSVLEESTFDSSIKVEDLLNSTEDDTECDLREFAETNLSFLDEDQEFLNDSRNATSPLSESFFTSGIGSADDVKQVLREVLPDENIQLQMSSEQQGENIIDLYYLPGLGLQSQMMPNSEDPLLSSSPREFGQQRQLPIAPVQPAEQLPEPLYHQQMLQQQQTGGQPQLVEAQAQQQDFMLPLTTASGGGCSATNGMQFGAVSNLQPVQNQSQFLDPSNQQPMALNNLLQPLIYSGGGAVVGSSFSDGGLVSNIKQDISDAKVTLLPVDCNANANRIGTSGPLDNSMMYVACNNKPLLSTLPAVAVASTPAPSATVTNLQPLSNQTNSILKRRLRPNGSQDAHNFSKFHTLSPHRSKLRKPSRTHYTPAPILNPDRKGTGLYCNVRKQLGQGLFDVFDDDFGDPVGLVDFSDESKVNLGSTYQAQIPACRAIQESADEVLGAELMWDPSVQTDEKILMRYIDLSKSSAVPMGSHSEEVALQALLKAQGNSAAAVLTLLQTQSSAFQMKWNAQELELFLRGLEKHGKDFGKIANELLTKSSGDCVQMYYFWKKLCVDYKVSHLKMEPVTPTTPVVEQKPYVCEIADCSASFSSKAALHGHVRIHAYGRNTSSNNNQHATSNSSNAPNSINSSNANNSYAGAPLAGNSSNASQAQIHANNSSSIINNNHSSNGNSSNNNNSNANISNSGGSNSHAASTTSSVANSHAKEPNNSNNAKDGEFPCKVCGKVFNKVKSRSAHMKTHRVQDPDQSPNTKQQQQQQQQQQQQQQHHQPSSSSSSSNTASASLVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01319989;
90% Identity
iTF_01319989;
80% Identity
iTF_01319989;