Sleb012870.1
Basic Information
- Gene Symbol
- bab1
- Assembly
- GCA_003285725.2
- Location
- NW:1113619-1176212[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-17 3e-14 52.0 0.0 1 43 531 574 531 576 0.95 2 2 6 1.1e+04 -4.2 2.2 6 23 687 707 681 710 0.66
Sequence Information
- Coding Sequence
- atGGCGTCTTCGGAAATGCCAGCTCGTGTTGAAACGCCTCTTGGCGCCGATTTGCCGAGCGAAACGAATGCCGAGCAAACGCAAGCATCGCAGCGTCAGCGtagtgggggtgggggtggagGTGCTTCAAAGGATTTAAAGGATGCCAAGGATAGGGGGCAAAAAACGGATATACAGAGATCGCCCGAACAGCGAAGATCACCGGAAACTGAAACAACGCCGGTGGGATCACCAAACAACACCAATGCAGGCAATACGGGGGGCGGTGGCGAGGGGGGCTTGGGACGCAGCTCTTCAGTGGACTCATCATCGACGCTGCCGCAACAATTCTGTCTTCGCTGGAACAATTATCAGAGCAATATGACGACCATATTCGATCAGTTGTTGCAGAACGAATGCTTCGTTGACGTCACGCTTGCCTGTGATGGCCGCTCGATGAAGGCCCACAAAATGGTGCTATCCGCCTGCTCGCCCTACTTCCAGACCCTGTTGGCCGAGACGCCCTGCCAGCACCCGATTGTCATAATGCGTGACGTCAACTGGCCCGATCTGAAGGCCATTGTTGAGTTCATGTATCGTGGTGAGATAAACGTCAGCCAGGATCAGATCGGGCCCCTCCTGCGCATTGCCGAAATGCTGAAGGTACGCGGCCTAGCAGATGTCACGAACATGGAGTCCTTGGCTGCAGAGGTGGACACGCCCAGCATGGCACAGGTTTCGCCCAAGGACTCGGCATCGGCAACGGGCGTCGAGCGCGAGGCTGAGGAGCTGCTCGCCTTCATGCAGCCCGAGAAAAAGCTGCGGTTGGGCAATGAATGGGGCGACTTCGGAGCAACTGCGTCCAGCAACATAGAGTTTCGCATGTCACCCCACCAGCAGCCAGCGCGCAACGTACGCAAGCGACGCTGGCCCTCCGCCGACACAATTTTCAATCCGCCCTCCAGTCCACTCAGCAGCCTCATAGCTGCCGAGCGTTTGGaacaggaacaCAGCTCCAAGTCTGCGGGTGCCGGCACCAGCGGGCCAGGCAGTGGCACGCCCCGACGTCTCACTCCGTCTtccgcagcagcagctctgGACGTGCATGGCCTGGAAATGCCCTCGCCGGCGACCACACCCGCGCCCAGTGCTCATCATTCGCAAAACATCTCACCCGCTTCGTCCGCACACTGCGGCTCCTCTGGCCACACTGCGCCATCCAGTTTGGTTCCATCGCCAGCGAGTGAGGCGCGTTTTCCGATGAACCCCGCCGCAGCCATGGCTGCTGCTATGGAACTGAGTGGCCTCGGAGCTGCACAAACGAATACGTCGGCGAGTTCCGAGCCACGCCTTCCACCGCCCCCTCACCATCATATCACTCCGTCACCGTCTGATGACATGGAAATCAAACCCGGCATAGCCGAAATGATACGCGAAGAAGAGCGGgCCAAAATGCTGGAGAACTCACACGCTTGGATGGGAGGTACCGCATCGACGCTGGCTGACAGTTACCAATACCAACTGCAGTCGATGTGGCAGAAATGCTGGAATACCAACCAAAATCTGATGCACCACATGCGCTTTCGTGAACGTGGTCCGCTCAAATCCTGGCGCCCCGAGACCATGGCCGAGGCCATTTTCAGCGTCCTGAAGGAGGGCCTATCATTATCGCAGGCGGCTCGCAAATACGACATACCCTATCCAACGTTTGTGCTATATGCGAATCGTGTCCACAATATGCTGGGACCCTCCATCGATGGCGGACCCGATCTGAGGCCGAAGGGGCGCGGAAGACCGCAGCGCATATTACTGGGGATCTGGCCAGACGAGCATATCAAGGGTGTAATTAAGACGGTAGTGTTTCGTGATGCCAAAGAAATAAAGGATGACGGCATGAGCTCGCATTTGCCGCCCTATGGACGTCATTCGGATCTGTCTCTTAACTATCCCGGATCTAGTGGCATGACAGCCGGCGGCCCTAGCCTGGGATCGTTGGCTTGTCCCAATGGCATGCCCAGCGGGGCGGTCGGTAGCGGCGGATCCGGAACAGCTGCCGAACAACAAATGTCGCAGGAAACCGCAGCCGCCGTCGCGGCAGTGGCGCAAAATCTACGTCAACAGATGCAAATGGCAGCGGCCGCgcagcaacaccagcatcAGCACGCGGAAAGTGGTGGACCACCGCCGGGACTATTCAATCTGCCCCCGCATTTGCAGCCGCATCCGGTGCCCGGCGGCATACCGCTGCCCAAGGCGAGCATATCGCCGGCGCTGAGCAGCGGGTCGAATCCATCGCTGGGACCACGGCATGCGCCCTCGCCCTGCGGTCCCGCAGCCATGCACGCGCTCTCGGGCCTGCCGCCCAGTATGGCCGTCGCATTGCGCGATCCCGCCGCCGCCTCGCTACTgggccagcagcaacagcaacacctgCAACAGTtacagctgcagcagcaacatgcactgctgcagcaCGCcctacagcagcaacatcagcagcaacagcaacatcagcagcagcaacaacagcaacaacaacagcaacatattGCTGATAAGTCGAAGGCAGCGGCGTCTTCCGAGCGGCGACAGGCGAGTCCGCTGCGCAGCGACACCCCGCACTTGCATTCGCCTTTGCCATTGCCAGAGCTCGGCCTAGAGATAGGAAGCTACAAACGCGAATACTCTCCCACACAGCTCTTCGCCGACGATTTGGCCGAGCTGGTCAGCGGCGTCGCGTCCTCGTCCTCGCCGGCAACCACGGCAACATCCACCGCGCCAGCAACGAGCATTGCTACGGGAAGAGCCTCATCCACCGACATCAGTTCGAGCAGCATTAAGGTAGAGCCCATTACCACGAGCAACGAATAG
- Protein Sequence
- MASSEMPARVETPLGADLPSETNAEQTQASQRQRSGGGGGGASKDLKDAKDRGQKTDIQRSPEQRRSPETETTPVGSPNNTNAGNTGGGGEGGLGRSSSVDSSSTLPQQFCLRWNNYQSNMTTIFDQLLQNECFVDVTLACDGRSMKAHKMVLSACSPYFQTLLAETPCQHPIVIMRDVNWPDLKAIVEFMYRGEINVSQDQIGPLLRIAEMLKVRGLADVTNMESLAAEVDTPSMAQVSPKDSASATGVEREAEELLAFMQPEKKLRLGNEWGDFGATASSNIEFRMSPHQQPARNVRKRRWPSADTIFNPPSSPLSSLIAAERLEQEHSSKSAGAGTSGPGSGTPRRLTPSSAAAALDVHGLEMPSPATTPAPSAHHSQNISPASSAHCGSSGHTAPSSLVPSPASEARFPMNPAAAMAAAMELSGLGAAQTNTSASSEPRLPPPPHHHITPSPSDDMEIKPGIAEMIREEERAKMLENSHAWMGGTASTLADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKEIKDDGMSSHLPPYGRHSDLSLNYPGSSGMTAGGPSLGSLACPNGMPSGAVGSGGSGTAAEQQMSQETAAAVAAVAQNLRQQMQMAAAAQQHQHQHAESGGPPPGLFNLPPHLQPHPVPGGIPLPKASISPALSSGSNPSLGPRHAPSPCGPAAMHALSGLPPSMAVALRDPAAASLLGQQQQQHLQQLQLQQQHALLQHALQQQHQQQQQHQQQQQQQQQQQHIADKSKAAASSERRQASPLRSDTPHLHSPLPLPELGLEIGSYKREYSPTQLFADDLAELVSGVASSSSPATTATSTAPATSIATGRASSTDISSSSIKVEPITTSNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01319835;
- 90% Identity
- iTF_01319835;
- 80% Identity
- iTF_01319835;