Sleb012655.1
Basic Information
- Gene Symbol
- bab2
- Assembly
- GCA_003285725.2
- Location
- NW:1239760-1280424[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1 2.2e+03 -1.9 0.2 2 12 565 575 564 579 0.78 2 3 1.2e-17 2.2e-14 52.4 0.0 1 43 733 776 733 778 0.95 3 3 3.2 6e+03 -3.4 0.1 3 16 824 837 823 837 0.88
Sequence Information
- Coding Sequence
- ATGGATATGACAAAGGAAATAATTGACTATGAGCAGAAGTTGGATAACAAGCCGTACTACGATACAATGGAGGCCAACACGGACGGAGCCACAGCCACTGAGGATGGCAAAACAGATCTAGAGGAAGGTCaagacacaacaacagcaacagcaacagcaacgacaataaAAGAGTTGTCAACACGTCTATTAACAGATACAGCGCGAGACCCGGAGAAGGAGAGTGCGGAGATGGCAGACTCGCCCCTAACGCCAGCAGCCGATATGGCGAGCAGTCTGGTGCCAGACAAAGATAGCTTATCGCCGAGTAGGATAAGTGAGTTGCTGACGCCGCCCCCCCGACCCTTCACATCCAGCGAGGTGGTGGGTCTAAGCGAGCCCATTGAGCCGGAACTGCGTGTGGCCCATATTGGAAAGAAGTCGCGTTCCTTGCCCGTCTCCCCACAGCCACTCGCCGTCTCACACAGTCTGGCGGAGAGAGCACACTTCGAGTTCCATCCGAGCGCAGCGGCCGCCACAGAGCCGAAGTCAAAGCAGAGCCCCAAACCCATACGGCCGACGGCATTGGGTCAGCGAAAACTGCATCGGGGGAGCCACATCGGCAACGAGGCGGGCAACAGTCAGCAGTTCTGTCTGCGCTGGAACAACTATCAGTCGAACCTGACCAACGTCTTTGACGAACTGCTTCAAAACGAGTCCTTTGTGGATGTGACGCTTGCCTGCGAGGGACACTCGATTAAGGCCCACAAAATGGTGCTCTCCGCCTGCTCCCCCTACTTTCAGGCGCTCTTCTACGAGAATCCCTGCCAGCACCCCATCATCATAATGCGCGACGTCAGTTGGTTCGACCTTAAGGCGCTGGTGGAGTTCATGTACAAGGGCGAGATAAATGTGTGCCAGGACCAAATCAATCCGCTGCTCAAGGTCGCCGAAACATTGAAAATTCGCGGCCTTGCCGAGGTCAGTGCCGGTGCCAACAACCCAGCCACTaacgccgccgccgccgccgccccAGCGCATTCCATGCTGCCCGAGCAGCGCATGACCATCTACGACGAGGATgctgaggaggaggaggacgaGTTGACAGCCAACGCGCTGCTGCGCTCCAATGCGGATGATCTGGATGGGGATGGAGATGGGGATGATGATGTCGAGGGCGGTCTGTTGAAACCGAAACGCGCTCGTTTGCTGGCCAGACTACAGAACGACTCCGTAGCAGCCGCTGCAGTCGCCCTGGATCTCAATCAGCGTCAACGCAAGCGTTCCCGCGATGGCCAGCTCCTAGATTACAACCAGACAGGATCCAACAATGAACAGAGTTCAGTCCCAGACTCACCCCACAACAACACACGTCCTGGTGGAGGCTCCGGCTCCACACCCAGCCAGCAATCGCAGTCCCAATCCCAGCCACTGGCCATGACCACCTCCACCATTGTGCGCAATCCCTTTGCCTCCCCCAATCCACAATCGCTGGTCATCACAAATGTCTCCGGCAGTTTGTCCTCAGCGTCGAGCAGTTCGGGCAACTCCACGGCCGGCGGCTCTTCATCCTCCGCCGCGGCCTCAGCCTCCGCTGCGACATCTTCTTCGTCGGCCGGCAGCACCTACAGATCCCCGCCCCCCTCCACGGCGCAGAACAGCGCTTCAATGGCCGCTCTCCAGTCCCCCACGGCCGCCACTTCAGCGAGTCATGCCAACATGGCAGCCGCAGTGGCTGCCGCCCATCATGGCCAGCATCAACCACCGCCTCCTCCGCCCTCGGCAGCCATGCACCACcaagcggcggcagcagccgCTGCCCAACAACTAGCCGCAGCtcatcatcagcaacagctgcaTGCCGCTGCCCACTCACATGCGGCCATGGCCAGCGCCCTCGGCGCCTCGTTGGTCGCCGCTGCGACAGGGTCGACTTCGGACAGCAGTCCCTCCACCGGAGGCCCGCCTGTGCCCCATCATGATGACATGGAAATTAAACCGGAAATTGCAGAGATGATTCGCGAAGAGGAAAGGGCCAAAATGATTGAGAGCAGTGGCGGACACGGCTGGATGGGAGCCACGACGGGCACATCTGTGGCAGCAGACAGCTATCAGTACCAATTGCAGTCCATGTGGCAGAAGTGCTGGAACACCAACCAACAGAATTTGGTGCAACAGCTCAGGTTTCGTGAGCGCGGTCCGTTGAAGTCCTGGCGGCCGGAAGCCATGGCCGAAGCCATTTTCAGCGTTCTCAAGGAGGGTCTCTCTCTATCGCAGGCCGCGCGAAAATACGACATACCCTACCCGACATTTGTCCTCTATGCGAATCGTGTGCATAATATGCTGGGCCCCTCCCTCGACGGCGGCACCGATCCGCGGCCCAAGGCCCGCGGTCGTCCGCAGCGCATTCTGCTCGGCATGTGGCCGGAGGAGCTGATTCGCTCGGTGATTAAGGCCGTCGTGTTCCGTGACTATCGCGAAATCAAAGAGGACATTGGCGCAGCGGCCCATCAGTATGCCAATGGACAGGCACATGGCCCGCACTTTGGAGCTGGCGCAGGAAACTCGGCCGCTTCCGCAGCTGCAAATGGGTATCATTCGGCGGCCAAAATGGTGGCCCAGAATGCTGCACTTGCTCCTCCCGATACTAATAGCACGCTCTCTTCGATGACGGAGACGTTGCGTCGCCAGATACTgtcgcagcaacagcaacagcaatcgcCCATCGCCCAGTCCTTGAACATGTACAAGTCGCCGGCCTATCTGCAGCGCTCCGAGATCGAGGATCAGGTGACTGCGGCggctgccgttgccgctgccaAGCATCAGCAGAACGAGCGTCGCGGCTCGGAGAACTTGCCCGATCTAAGCGCCCTGGGGCTAATGAATCTGCCCGGTCTGAATGTTATGCCCACACAGCAGGCGTCGCATATGAGGGGTTCGGGCAGCTCCGGCAGCGCTGGCGCTCCCCTGCATCCCAGTGCGGCGAGTTATTCACGCGACCTGTCACGAGAGCGTGAACTGAAGGATGCGATGCAGGCACGGCAGTATGGGAACCAGTCACGCGGTTCATCTTCGTCGGCAGGCAGCAAATCTGCAAGCATGCATGAACGAATTCATGGTGCGTCCATGAATCGTCCTGGCGCTGCCTCCCCCTATTCGCACTATCCCAAGCACAAGGAGCTCTCCAACTATGCGTATAACAAGCGTTTTCTTGAGAGCTTGCCCGCTGGCTTCGATTTCGAGGCCATTGCCAATGGGCTGCTGCAGAAGTCGGTGAGTAAAAGTCCTCGTTTTGAGGACTTTTTTCCGGGTCAGGACATGAGTGAACTCTTCGCCAGCGCCGATGCTGCGACTACGGTCCGCGAATCCCCCCTGATGAAGATTAAGCTGGAGCAGCAACAGGCCGCCGATGTGCCACACGAAGATTAA
- Protein Sequence
- MDMTKEIIDYEQKLDNKPYYDTMEANTDGATATEDGKTDLEEGQDTTTATATATTIKELSTRLLTDTARDPEKESAEMADSPLTPAADMASSLVPDKDSLSPSRISELLTPPPRPFTSSEVVGLSEPIEPELRVAHIGKKSRSLPVSPQPLAVSHSLAERAHFEFHPSAAAATEPKSKQSPKPIRPTALGQRKLHRGSHIGNEAGNSQQFCLRWNNYQSNLTNVFDELLQNESFVDVTLACEGHSIKAHKMVLSACSPYFQALFYENPCQHPIIIMRDVSWFDLKALVEFMYKGEINVCQDQINPLLKVAETLKIRGLAEVSAGANNPATNAAAAAAPAHSMLPEQRMTIYDEDAEEEEDELTANALLRSNADDLDGDGDGDDDVEGGLLKPKRARLLARLQNDSVAAAAVALDLNQRQRKRSRDGQLLDYNQTGSNNEQSSVPDSPHNNTRPGGGSGSTPSQQSQSQSQPLAMTTSTIVRNPFASPNPQSLVITNVSGSLSSASSSSGNSTAGGSSSSAAASASAATSSSSAGSTYRSPPPSTAQNSASMAALQSPTAATSASHANMAAAVAAAHHGQHQPPPPPPSAAMHHQAAAAAAAQQLAAAHHQQQLHAAAHSHAAMASALGASLVAAATGSTSDSSPSTGGPPVPHHDDMEIKPEIAEMIREEERAKMIESSGGHGWMGATTGTSVAADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSLDGGTDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEDIGAAAHQYANGQAHGPHFGAGAGNSAASAAANGYHSAAKMVAQNAALAPPDTNSTLSSMTETLRRQILSQQQQQQSPIAQSLNMYKSPAYLQRSEIEDQVTAAAAVAAAKHQQNERRGSENLPDLSALGLMNLPGLNVMPTQQASHMRGSGSSGSAGAPLHPSAASYSRDLSRERELKDAMQARQYGNQSRGSSSSAGSKSASMHERIHGASMNRPGAASPYSHYPKHKELSNYAYNKRFLESLPAGFDFEAIANGLLQKSVSKSPRFEDFFPGQDMSELFASADAATTVRESPLMKIKLEQQQAADVPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01319830;
- 90% Identity
- iTF_01319830;
- 80% Identity
- iTF_01319830;