Sleb006321.1
Basic Information
- Gene Symbol
- retn
- Assembly
- GCA_003285725.2
- Location
- NW:5688520-5722190[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-26 6.3e-23 80.6 0.0 2 89 312 397 311 397 0.96
Sequence Information
- Coding Sequence
- ATGCAACTAAGTCTGCACCCGACTATGGATTGTAGCGGCCgttcaaataatattgaacGTGATTCCGATTTGGGCGACGATTTGTCACACGGCGATCGTACAGATGACGAGATGCGTGACTGCGACTCTGTGGACGGGGAGCATCACCAGCATCAGTTGAGGGGCAAGGCGGCAATAGCGGCACGTTTAAGTCACACCATCGCGACCAACGGTGGCAGTCTCAACTTTGCTCACAGTCCCGAGCAGCAGGCAGAGTTGCCGTTAAGCCATCATCACCAATTGCCACCAAATCATCCGTTCAACGCACTGGGCAGCTTCATGAGCATCGGCGGACTACACAGCATTCCAAATCTGCAGCACAGCGATGTGCTGGAGAAGCTGAAGATGCAAGTGCGTGACATGAAAGTGGGTCTCATGGAACAGGACTATGCGGCAGCGGCACATGCTGCAGCATTTGGCGCCAACATGTTGCCTACCACAATCAATTCGGCCTTTCCACTGCCACACAACTCGGTTGTCGCTGCGGCAGCTGCTTCCTTCGGTCATGGCCATGCGACGTCTGGACTGGGCACAACGAGCTCAACAAATGGCAGCACGGCAGCCACAAATGGTTACAATGGCGGCTCCGCCGCCAGTATAACCGCCTCTGGAGGGGGCGGCGGAGGCAAccacggcagcaacaacaccaacaacaacaataatagcagcagcagcaataacaacaacactggcggcaacagcaatgccaatgccaatgcccaTCCCTTCTCATTTGCATCGCCAACAGCGCCCAGCGCCAAAGACGCTAATTCCGCATCAAACTCATCGACATCCAGTGAGGCTTCCAACTCATCGCAACAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTACGAAATAAATGATGACCCCAAGCGTAAGGAGTTCCTGGATGATCTGTTTTCGTTTATGCAAAAGCGCGGTACGCCCATCAACCGGCTGCCGATAATGGCGAAGTCGGTGCTGGATCTATACGAGCTATACAATTTGGTGATTGCTCGTGGCGGCCTCGTCGATGTCATCAACAAGAAGCTATGGCAGGAGATCATAAAGGGACTGCATCTGCCGTCGAGCATCACAAGTGCAGCATTCACGCTGCGCACACAATACATGAAGTATCTCTATCCGTACGAATGCGAGAAGAAGAACTTAAGCACACCGGCCGAACTGCAGGCGGCGATTGATGGCAATCGGCGCGAAGGACGCCGCTCCAGCTACGGCCAATACGAGGCCATGCACAATCAGATGCCACTGACTCCCATTTCCCGCCCACCTTTGCCGGGTGGCATGCAACAAATGTCGCCTCTGGCGCTCGTCACACATGCCGCAGCCGCCAATAATCAGCAGGCGCAGGCAGCGGCCGCCGCCGCAGCCGCCCACCGTCGCCTAATGGGTGCCCCGGCATTCGGACAGATGCCCAATCTGGTCACCCAGGAGATCGAGAACCGCATGATGGAGTATCTGCAGCTCATTCAGGCGAAAAAGGAGCAGGGTGTGGGCGGCAACCAGGGTCCGGGTGCTCTCGCCGCCACTCCCcaccatcagcagcagcagcaacaacaacaacagcaccaacagcaacgacaacgcTCCCAGAGCCCCGAGATGAGCACTCGCGAGGCGCTCAGCGCACAGGTAGCCCTCTGGCACATGTACCACAACAACACGAGTCCACCGAACTCGGCGCACACCTCGCCACAATTCGGAGTCAATGCGGAGCAGCAACGcGAAGCTTTGAACCTCTCCGACTCGCCGCCGAATCTCACAAACATAAAGCGTGAACGAGAGCGCGACCCCACGCCGGAGCCAATCGAGGAAGATGCACCGCACCAGCCGCCGCCAGCCAAGCGCGTGGGCGTGGGCAACACTTTGATGCCGCCAGGTTTCCCAGCCAATTTCTACTTAAATCCACACAACATGGCCGCagtggcggcagcagcaggcTTCCACCATCAGGCCAACAGCCATCAGCCGGATGCGGCGTCCGAGGGCGAGCCGGAGGACGAGTACGGCAGTGGGGAGCACAACACAACGGGCAACTCGTCGTCCCTGCACGATGACAGCGAGCCGCAGCAGCTGAATGGTCACCACAGCaatcaccaccaccatcatcatcatcatcacaaCAATCATCTGGACAAATCAGATGACTCGGCCATTGAGAATTCTCCCAGCACCTCGACGTCGGCATCGGGCGGCAATCGTCACAGCTCTCCGGTTTCGACCAAAAAGAAGACGGTCGGCAAGACGCAGTCCCTTTCCAAGGATTTGCAGGCGGACAAATGTGCAGCCAGCAAGCTCAGTCCGCTAGAGACGCTCAGCCTGCTCTCCGGCATGCAGTTCCAAGTGGCTCGCAATGGCACTGGCGAGAACGGCGAGCAACAGTTGATTGTCAATCTCGAGCTCAACGGCATTAAGTATTCGGGCGTCCTGGTGGCCAATGTGGCAAGCCATGACGACAACGAGGCATCCACAGGGCCAGCCGACGAGGACGCCACAGCACCAGCAACTGCTGAGGAGCCCAGCCTTGAcggagcaacagcaacggcggCGACAGCCTCAGCGTTGGAGTCGACGCCAGCATCTGGGGACGAACCAACGGGCGAGCCAATAAAGACCGAGCAATCGGACTCGAATGCCATTCTAAATGGTGCGGCGactgtgggtgtgggtgtgggtgtgggtctGCCGTTGCTCAAGGATGCTGTGGTCAGTTCGTAG
- Protein Sequence
- MQLSLHPTMDCSGRSNNIERDSDLGDDLSHGDRTDDEMRDCDSVDGEHHQHQLRGKAAIAARLSHTIATNGGSLNFAHSPEQQAELPLSHHHQLPPNHPFNALGSFMSIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTINSAFPLPHNSVVAAAAASFGHGHATSGLGTTSSTNGSTAATNGYNGGSAASITASGGGGGGNHGSNNTNNNNNSSSSNNNNTGGNSNANANAHPFSFASPTAPSAKDANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGAPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQGVGGNQGPGALAATPHHQQQQQQQQQHQQQRQRSQSPEMSTREALSAQVALWHMYHNNTSPPNSAHTSPQFGVNAEQQREALNLSDSPPNLTNIKRERERDPTPEPIEEDAPHQPPPAKRVGVGNTLMPPGFPANFYLNPHNMAAVAAAAGFHHQANSHQPDAASEGEPEDEYGSGEHNTTGNSSSLHDDSEPQQLNGHHSNHHHHHHHHHNNHLDKSDDSAIENSPSTSTSASGGNRHSSPVSTKKKTVGKTQSLSKDLQADKCAASKLSPLETLSLLSGMQFQVARNGTGENGEQQLIVNLELNGIKYSGVLVANVASHDDNEASTGPADEDATAPATAEEPSLDGATATAATASALESTPASGDEPTGEPIKTEQSDSNAILNGAATVGVGVGVGLPLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -