Sleb006825.1
Basic Information
- Gene Symbol
- grh_1
- Assembly
- GCA_003285725.2
- Location
- NW:21651212-21697791[+]
Transcription Factor Domain
- TF Family
- CP2
- Domain
- CP2 domain
- PFAM
- PF04516
- TF Group
- Beta-Scaffold Factors
- Description
- This family represents a conserved region in the CP2 transcription factor family.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.34 2.2e+03 -2.8 0.2 109 109 456 456 397 496 0.55 2 2 1.6e-63 1e-59 201.1 0.5 24 221 593 785 579 787 0.94
Sequence Information
- Coding Sequence
- ATGTCCACATCAGCCGCCACAACGAGCGTCATTACGTCCAACGAACTCTCGCTCTCCGCTCACACACACGCCACACACACCTCGCACAGCAACGCACTGCACGCCCCGTTGTCACCGATCCAGCAAGGCGCCAATATTGTGAGCAACACGAACACCACATCATCACCCCTGGCGCCCAACGGTGTACCTTTGCTCACCATGCATCGCTCACCGGACAGTCCCCAACCGGAGCTGGCCACCATGACTAATGTGAACGTCCTAGATCTGCACACAGACTCATCCAAGTTGTATGAAAAGGatgcagtttttatttacgAAACACCCAAGGTGGTCATGTCCAGCATGgatggcggcggcggcggggGCCCCAATGGTGGTCCCGACGATCATGTCATTGATGCGCGCATCGCTGCCCAGCTGGGCACACAGCATGCAGCGCTGCCGCCGCCACAGCCAGCGCCCGATAATCAGCCGCTGGCCAAGATCGAATTCGATGAGAATCAGATTATCAGAGTTGTGGGTCCCAACGGCGAACAGCAGCAAATCATCTCGCGCGAGATCATCAATGGCGAACACCACATATTGTCCCGGAATGAGGCCGGCGAGCACATACTCACCCGCATCGTCAGTGATCCCTCGAAGCTGATGCCGAATGATAATGCGGTAGCCACCGCCATGTACAATCAAGCCCAGAAGCTGAACAACGATCATCAGGCGGTCTACCAGACGTCGCCACTGGATGCGTCCGTTCTACACTATAGCAATGACAATGTGATCAAGACTGAGGCGGACATCTATGAGAGTCACAAAAAGCATGAGGCGGGCTCCATTATTTACACCACCTCGGATCCGAACGGTGTCAATGTAAAACAATTGCCGCACTTGTCGGTGCCACAGAAGCTTGATCCGGATCTGTATCAGACGGACAAACACATAGACCTGATCTACAATGATGGCAGCAAGACTGTCATTTATTCGACAACAGATCAGAAGGGTCTGGAAATCTATTCGGGTGGTGATATTGGCAGCTTGGTGTCGGATGGTCAGGTTGTGGTGCAGGCAGGTCTCCCATATGCCACAGGAACGAACGCCTCAGGTCAACCGGTCTACATAGTGGCCGACGGAGCATTACCGCCAGGAGTCGAAGATCATTTACAGGGCAACGCTAGCAACGCCAGCAAACTGAATGGACAGACCACACCTATCGATGTCTCTGGCCTATcgcaaaatgaaattcaagGCTTTCTACTTGGTTCACACCCATCATCATCGGCTGGGGCCAGTACGCCGGTTGTCTCCACGACAACAATCTCGAatcagcaacaccagcagcaacagcaacaacaacagcaacagcatccgACAGCCATAGTGACGACCGCGGGCGTGGGCAATGCGGGCTCGATTGTCTCGGCTGCagtgcaacagcagcagcagcaacaacaacaacaacaacaacagctaatTAGCATCAAACGAGAGCCCGAAGACTTGCGCAAGGATCCGAAAAATGGCAGCATCACGGCAGCGAATGGTTCAGTCATAACGCAAAAGTCCTTTGACTACACGGAACTCTGTCAGCCGGGCACGCTTATCGATGCCAATGGCGGCACCATACCCGTATCCGTCAATAACATCCAACGCACCGTCGTCCACGGCAGTCAAAACAGTCCGACCACCTCGTTGGTCGACACGAGCACAAATGGCTCGACGCGCTCGAGGCCCTGGCATGATTTTGGCCGCCAAAATGATGCtgacaaaatacaaataccaaAAATCTTCACAAATGTGGGTTTTCGCTATCACCTGGAAAGTCCCATAAGCTCATCGCAGCGACGCGAGGATGATCGCATCACCTACATCAATAAGGGACAGTTCTACGGCATAACGCTGGAGTATGTGCACGATGCGGATAAGCCAATTAAGAATACAACAGTTAAGAGTGTGATCATGTTAATGTTTCGTGAGGAGAAGAGTCCCGAAGATGAGATAAAGGCCTGGCAATTCTGGCACAGTCGCCAGCATTCCGTGAAGCAAAGAATCTTGGATGCAGATACAAAGAACTCGGTTGGCCTTGTTGGTTGCATTGAGGAAGTGTCGCATAATGCCATTGCCGTTTATTGGAATCCGCTCGAGAGTTCGGCCAAGATCAACATTGCAGTTCAATGTCTGAGCACGGATTTCAGCAGTCAAAAGGGTGTGAAGGGTCTGCCGTTGCACGTACAAATCGATACATTTGAGGATCCCAGAGAGGCCACAGTCTTTCATCGTGGCTACTGTCAGATCAAAGTATTCTGCGATAAGGGCGCCGAGCGCAAGACACGCGACGAGGAACGTCGTGCGGCTAAACGCAAAATGACAGCGACGGGTCGCAAGAAACTGGATGAGCTATATCATCCGGTCACAGATCGCTCAGAATTCTACGGCATGCAGGATCTAATCAAGCCACCGGTACTCTTCTCACCCGCCGACGACATGGATAAGACCTTCTATGGCCATGAGACTGACTCACCGGACCTGAAGGGCGCTTCGCCATTCCTGCTGCACGGCCAGAAGGTGGCCACGCCGACGCTGAAATTTCACAATCACTTTCCGCCCGACATGCAGACTGACAAAAAGGATCACATACTGGATCAGAGCATGTTAGCGACTGCACCCATGGCCGACTTCGGACCACCCATAAAGCGGGGACGCATGACGCCGCCGACCACGGAGCGTGTGATGTTGTACGTGCGACAGGAGAACGAAGAGGTCTACACGCCCCTGCATGTGGTGCCGCCCACCACAATTGGCCTGCTTAATGCGattgaaaacaaatacaaaatctCAACAACGAgcataaataacatttatcGCACAAATAAGAAAGGGATTACTGCGAAAATTGATGATGATATGATATCCTTCTACTGCAACGAGGACATCTTCCTGCTGGAAGTGCAGCAGATCGAGGACGATTTGTATGATGTTACGCTGACGGAGCTGCCCAATCAATAG
- Protein Sequence
- MSTSAATTSVITSNELSLSAHTHATHTSHSNALHAPLSPIQQGANIVSNTNTTSSPLAPNGVPLLTMHRSPDSPQPELATMTNVNVLDLHTDSSKLYEKDAVFIYETPKVVMSSMDGGGGGGPNGGPDDHVIDARIAAQLGTQHAALPPPQPAPDNQPLAKIEFDENQIIRVVGPNGEQQQIISREIINGEHHILSRNEAGEHILTRIVSDPSKLMPNDNAVATAMYNQAQKLNNDHQAVYQTSPLDASVLHYSNDNVIKTEADIYESHKKHEAGSIIYTTSDPNGVNVKQLPHLSVPQKLDPDLYQTDKHIDLIYNDGSKTVIYSTTDQKGLEIYSGGDIGSLVSDGQVVVQAGLPYATGTNASGQPVYIVADGALPPGVEDHLQGNASNASKLNGQTTPIDVSGLSQNEIQGFLLGSHPSSSAGASTPVVSTTTISNQQHQQQQQQQQQQHPTAIVTTAGVGNAGSIVSAAVQQQQQQQQQQQQQLISIKREPEDLRKDPKNGSITAANGSVITQKSFDYTELCQPGTLIDANGGTIPVSVNNIQRTVVHGSQNSPTTSLVDTSTNGSTRSRPWHDFGRQNDADKIQIPKIFTNVGFRYHLESPISSSQRREDDRITYINKGQFYGITLEYVHDADKPIKNTTVKSVIMLMFREEKSPEDEIKAWQFWHSRQHSVKQRILDADTKNSVGLVGCIEEVSHNAIAVYWNPLESSAKINIAVQCLSTDFSSQKGVKGLPLHVQIDTFEDPREATVFHRGYCQIKVFCDKGAERKTRDEERRAAKRKMTATGRKKLDELYHPVTDRSEFYGMQDLIKPPVLFSPADDMDKTFYGHETDSPDLKGASPFLLHGQKVATPTLKFHNHFPPDMQTDKKDHILDQSMLATAPMADFGPPIKRGRMTPPTTERVMLYVRQENEEVYTPLHVVPPTTIGLLNAIENKYKISTTSINNIYRTNKKGITAKIDDDMISFYCNEDIFLLEVQQIEDDLYDVTLTELPNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00602349;
- 90% Identity
- -
- 80% Identity
- -