Slat018001.1
Basic Information
- Gene Symbol
- nfxl1_1
- Assembly
- GCA_037075145.1
- Location
- JBAMCM010000863.1:2642293-2645362[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 1.1 1.2e+04 -3.3 0.5 15 18 94 97 93 98 0.79 2 23 2 2.1e+04 -8.1 6.4 15 19 150 154 149 154 0.82 3 23 0.13 1.3e+03 -0.3 0.4 4 10 185 191 184 191 0.95 4 23 6.5e-08 0.00067 19.8 15.5 1 18 199 215 199 216 0.98 5 23 1.7 1.7e+04 -3.9 2.8 6 10 242 246 241 246 0.89 6 23 6.5e-07 0.0067 16.6 16.5 1 19 252 271 252 271 0.97 7 23 0.16 1.7e+03 -0.6 1.7 5 10 295 300 295 300 0.94 8 23 2.7e-09 2.8e-05 24.2 14.3 1 19 306 324 306 324 0.99 9 23 2 2.1e+04 -5.4 3.5 13 18 340 349 339 354 0.58 10 23 1.2 1.2e+04 -3.4 0.3 1 8 349 355 349 356 0.59 11 23 1.8e-07 0.0018 18.4 8.8 1 18 359 376 359 377 0.96 12 23 0.7 7.3e+03 -2.7 0.4 1 5 386 390 386 395 0.73 13 23 2 2.1e+04 -5.0 2.3 5 10 400 405 400 405 0.91 14 23 0.00031 3.2 8.1 17.8 1 18 411 428 411 429 0.97 15 23 3.4e-08 0.00035 20.7 14.7 1 19 438 456 432 456 0.90 16 23 0.00035 3.6 7.9 10.4 9 18 501 510 492 511 0.90 17 23 0.15 1.6e+03 -0.6 3.9 4 12 525 533 514 533 0.87 18 23 1.7 1.7e+04 -3.9 1.1 6 10 589 593 588 593 0.85 19 23 2e-06 0.021 15.1 4.9 1 12 599 610 599 610 0.97 20 23 2 2.1e+04 -6.7 6.2 1 10 623 630 623 630 0.87 21 23 0.032 3.3e+02 1.6 17.6 4 18 640 654 638 655 0.93 22 23 1.7 1.7e+04 -3.9 1.6 8 13 660 665 659 665 0.74 23 23 2.2e-06 0.022 15.0 11.0 1 16 706 720 706 726 0.92
Sequence Information
- Coding Sequence
- ATggaaaaattctcaaaggTGCAGGCTAAAAACTTGGCAGCAGCCAAGAAACTTGCTGACTCCTATGACTCCAGTTCGGATGAAGGCGAACTGGATGAGAAACATATTCTGGATTTGTTGTACGAGCATTATCAGCCAATCAATGAATCGAATACTTTAGCTACCAAAGATAAAAACTCCAACAAAACCTCGGGGTTTCTGGAAAATTTGTTACACTCCGGAGCAGCGACTTGCCTCATTTGCATTGGCAGTATCAAACGTGTGCAGCCGATTTGGTCATGTCAgaattgttattgcttttttcaCCTGAATTGCATTCAGCGTTGGGCCAATGACAGTCTCATGCAGATGAAAACCAAGGTGGAACAGCAGAGCAGCAACAATGGTTATTACAATCATCTCGGTGAATTTGTGCCACCCAAGCCTCAGAAATCTCTGCATTGGTGCTGTCCTCAGTGTCGCAAGGATTACCCACCCAACGAGAAACCCAAGCAATACGAATGCTTCTGTGGCAAGGAAATTGATCCGCAGCCACAGCCTTTTCTGGTGCCCCACTCTTGTGGCGAGATCTGTGGGAAGCTTTTGCAACCCAAATGTGGACATGACTGCAAATTGCTGTGCCATCCTGGCCCCTGTCCACCTTGTGCCCAACTAGCGCATAGTTCCTGTCTGTGTGGCAAGTCAGATCCACGCTCCGTGCGCTGCATTGAGAAGAACTGGCAGTGCCAACAAAAGTGCAAAGCGTTGTTGAAGTGTGGCAAGCACGTCTGCAATCAAAAGTGCCATCGACCTGGCCAATGTCCGCCGTGCaccagcaaaagcaaacagccCTGCCAGTGCCAAAAAGAGCTGAAAGTCGTAAGCTGTTCCGATCTGAATTGGAGATGCCAGCAAGTCTGTGGTGCACCTTACTCCTGTGGGCTTCATAGCTGTGAGAAAGTCTGTCATGCCGGTCCCTGCGGCGAGTGCCCCTTGGGTCTACCACGTTCTTGCCCTTGTGGCAAAAGTACCAAAGTGGGACCCTGCAGCCAAGCGGTGGAGCCCTGTGGCGATACCTGCCAAAAGCTGTTGCCTTGTGGTCTGCATAGCTGTGCCCAGCGCTGTCATCGCGGAGCCTGTAATTTATGTCTGATTAttaccaaaaagaaatgccGTTGCGGTCTACATGAGAAGGAGTTGCCCTGTTCCAAAGAATTCACCTGCGAAACCAAATGCAAACAGATGCGCGACTGTGGCAAACATTCCTGCAATCGTAAGTGTTGTGGTGATCAGTGTCCGCCTTGTGAGAAAATTTGCGGCAAACAGTTGAGCTGCAATAAGCACAAATGCCAATCTGTGTGCCACAATGGACCCTGTTATCCCTGCAAGCTGGAATCTCAGGTGAATTGTCGCTGCGGCAAGACACGCCGGAGTGTGCCCTGTGGGCGGGAACGCAATGCTCGCATAGTTTGCCTGGAGCTTTGCAGaaTCTCCTCCAAGTGTCATCATAGTATCAAGCATCGTTGCCACAAGGGAGAATGTCCACCCTGTAATCAGATTTGTGGCCTGCCCAATGATACCACAGGCTGTGATCACTTGTGCGCTGCTCGTTGTCATTCAGCCATACGAGTAGCCAAGCCAATCAATGGCCCGAAACttccaaataccaaaaagTACGAATACAAATGTCTACCGCATCCCAAATGTGAAGAGCTTGTTATGGTCGGCTGCATAGGTGGCCACGAGGTAGCCAAGTGGCCCTGCAGTAATTCTAAGTCTACTTCCTGCCAGCGTAGGTGCAATCGAGCCTTGAAGTGTGGCAATCATACCTGCGCCTTGGTCTGCCATTCAGTGGCCCAGCTGGATAATATGCAGGAGCAAGCTGGTTGCGGTCGCTGTGAAGAGGGCTGTACTATTCCCAGGCCCGAAGGCTGTTTGCATCCCTGTACCAAAGGCTGTCATCCACCGCCGTGTCCGCCATGCTTGGCTCTCATCAAGAGCAAATGCCATTGCGGACTCAATCAGGTTGTCTACAAGTGTAGCGACTTCTTTAATGGCTCGAATAATCAGTCGGAAAAGGTCGAACTTCTGGAAAAGTTTCGCTGCTGTGGCAATCGTTGTCTTAAGAATTACCCTTGTGGCCATCGTTGCTTGGCCACGTGCCATTCTGGCAAGTGCCCCAATCCGGAATTGTGCCGCAAGAAAGTGAAAATCTTTTGCCAGTGCAAAAGGAAGAAAATTGAAGTTTCCTGTGAGAAGCATCGTGCTGGTCAAACCTCCCTGGACTGCGATGATCAATGTGCCAGCGAAATATCCAAGATCCAGGAAGCCGAGCAAGAGCAACTCCAACGCAAGCTGAGAGATGAAGAGGAAAAGAATCGCTTGGAACTGGAAAAATTCGAGCAACAAATGGGCAAGCGGAAGCCCAGAAACCGCAAGGTCCAAAACCTGGAGAAACCCAAGATCCCAGTCAATTGGCAGCGTGTGGCCATCAGTGCCTTTGTGGCTCTATCGGTGCTAGCTGCTTTGGCTGTGGCCTATTACACCGCGGACAGTTAA
- Protein Sequence
- MEKFSKVQAKNLAAAKKLADSYDSSSDEGELDEKHILDLLYEHYQPINESNTLATKDKNSNKTSGFLENLLHSGAATCLICIGSIKRVQPIWSCQNCYCFFHLNCIQRWANDSLMQMKTKVEQQSSNNGYYNHLGEFVPPKPQKSLHWCCPQCRKDYPPNEKPKQYECFCGKEIDPQPQPFLVPHSCGEICGKLLQPKCGHDCKLLCHPGPCPPCAQLAHSSCLCGKSDPRSVRCIEKNWQCQQKCKALLKCGKHVCNQKCHRPGQCPPCTSKSKQPCQCQKELKVVSCSDLNWRCQQVCGAPYSCGLHSCEKVCHAGPCGECPLGLPRSCPCGKSTKVGPCSQAVEPCGDTCQKLLPCGLHSCAQRCHRGACNLCLIITKKKCRCGLHEKELPCSKEFTCETKCKQMRDCGKHSCNRKCCGDQCPPCEKICGKQLSCNKHKCQSVCHNGPCYPCKLESQVNCRCGKTRRSVPCGRERNARIVCLELCRISSKCHHSIKHRCHKGECPPCNQICGLPNDTTGCDHLCAARCHSAIRVAKPINGPKLPNTKKYEYKCLPHPKCEELVMVGCIGGHEVAKWPCSNSKSTSCQRRCNRALKCGNHTCALVCHSVAQLDNMQEQAGCGRCEEGCTIPRPEGCLHPCTKGCHPPPCPPCLALIKSKCHCGLNQVVYKCSDFFNGSNNQSEKVELLEKFRCCGNRCLKNYPCGHRCLATCHSGKCPNPELCRKKVKIFCQCKRKKIEVSCEKHRAGQTSLDCDDQCASEISKIQEAEQEQLQRKLRDEEEKNRLELEKFEQQMGKRKPRNRKVQNLEKPKIPVNWQRVAISAFVALSVLAALAVAYYTADS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -