Slat008981.1
Basic Information
- Gene Symbol
- stc_1
- Assembly
- GCA_037075145.1
- Location
- JBAMCM010000217.1:7756738-7759999[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.9 2e+04 -4.0 1.6 15 19 347 351 346 351 0.81 2 16 0.045 4.7e+02 1.1 2.2 4 11 380 387 379 388 0.91 3 16 3.9e-07 0.004 17.3 15.0 3 19 393 409 392 409 0.94 4 16 0.00013 1.4 9.2 16.3 1 18 445 462 439 463 0.85 5 16 0.47 4.9e+03 -2.1 1.1 8 13 468 473 467 474 0.80 6 16 1.4 1.4e+04 -3.6 0.9 6 10 493 497 492 497 0.83 7 16 6.3e-09 6.5e-05 23.1 14.7 1 19 503 521 503 521 0.98 8 16 0.23 2.4e+03 -1.1 1.2 5 10 551 556 551 556 0.96 9 16 2.8e-05 0.28 11.4 15.7 4 18 569 583 562 584 0.86 10 16 0.055 5.7e+02 0.9 13.1 1 11 624 634 624 646 0.79 11 16 2.7e-10 2.8e-06 27.4 15.1 1 18 651 668 651 669 0.97 12 16 0.24 2.5e+03 -1.2 0.6 5 10 697 702 695 703 0.93 13 16 2 2.1e+04 -8.9 11.4 10 18 716 725 705 726 0.73 14 16 1.1e-07 0.0012 19.1 13.3 1 16 762 777 762 787 0.94 15 16 2.1e-06 0.022 15.0 14.2 1 19 794 813 794 813 0.96 16 16 1.2 1.2e+04 -3.4 0.1 8 12 829 833 828 833 0.76
Sequence Information
- Coding Sequence
- ATGGCTGAGTTTTGGCAACAGATGTCAGGTGATGAAAATACCGCCACTTCAATTCCAATAAATTCAGATGAGTCATGTAATGGAACTAGCCAAAATAGCCGCACCTCGGACGCCCCGAGGAACAACAACTACGTGGActtcaatcaatttattatgaatTGCAGACCTGAGTTGTACTCTAGTACAAATACTCTTAGTTATCAGCCGCATCAAAATTACAGCGCAGGAGGTGCCTTTGGTGCTGCTTCTAGCAGTTCCAATAACattttatatCACACCGGTAGTTCTACGCAGAGCTTAAATTTCGATATGTACACGCATTTTGGTAACAATCCCTTTGCTGCTAACTTCAGCTTGAGTACTTCCAAACTCCAGGCTGATGCTCCCGAATTTGTACCGAATTTCGCCACACTAAGCCTTGGTCCATCGGAGAcaacaaatggaaatgaagGCACCACTGACAATTTCACCCATGCCAACGGTCATGGTCCAGGCACAAACACTGCCAACCCACTTCAGTTAACAAAAGCCATAGAAACTGCCGATTTGAATACCAATAGACCAAGTGGTTCCAATAACAAACTACCATATCGCGACCGAGATCCCGACCGCGAGTCCAAACCCAGCAGCAGCCGTCAGCGGCGCGAATACCGAGCGGAGCGCGAAGACCGCAACGAACGCAAGAAGCAGCAGCGTTATGATAACCATCGCAGCAACAAGAGGCGCGATGACTGGAATAGAAACCGCGATCGCCTCAATGGCTTCCGCGTCGACGATTTGGACACGAGTAATGAGAGCCCCCTACCTTCacccgaaaagaaaaaatcatctTCACCCAAACAATTAGAGAACGAAAAACTCTCCCAGCGAGAGAAACTCGTGCGGGACATCGAACAACGACGCCTGGAGTGCCTTGTATGCGTGGAGCCAATCAAGGCTCATCATGCCGTCTGGTCCTGTCAGAACTGCTATCACGTGCTCCATCTAAAATGCACCACCACCTGGGCATCCAGCTCCAAGGTGGATAACGGCTGGCGTTGTCCAGCCTGTCAGAATGTCCTGGAGGAAGTTCCTCGAGAATATTTCTGCTTCTGTGGCAAGCTAAAGAACCCACCAGTAACTCGAACAGAGCTTGCCCATTCCTGTGGCGAGGTCTGCTGCCGCATAGAAGGCTGCAATCATGCCTGTACGCTGCTCTGTCATCCAGGGCCTTGTCCCCCTTGTCAGTCCAATGTTCAGCGAACCTGTGGCTGTGGCAAGGAGACCAAGACTATGCAGTGCGCCCTTAAAGAGGAGATTTCCTGTGGGGCCGAGTGTGGCAAGCTGCTAAACTGCGAGCAGCACACTTGTCATTCCCAGTGCCATGTGGGAAAGTGTACTCCTTGTGAAGAGAAAATCGATCAGACTTGCCACTGCGGCAAGCAGCAGCGAGAAGTTTTATGCACTCGGGAAACCCATGACCGTCGCCACTATTCATGCAGCAAGCCCTGCGGGAAGGACTTGGCTTGCGGAAGTCATAAGTGCAAGGATTCTTGCCATGCTGGACCCTGCAGGCCTTGCAAGCTCAGTCCCAGCCAAGTGACCTCCTGTCCATGCGGCAAGACCCCCATGCCACCCAATCAAAGAAGCTCTTGCCTGGACCCTATACCCACCTGCGAGAGCGTCTGCGGCAAGACCCTGCGTTGTGGCAAGCCGGCTCATCCACATCAGTGCGCCAGCAAATGCCATTTGGGCCAGTGTCCTCCTTGCAACAAGCAAACGGCTGTTAAGTGCCGCTGTGGTCACATGGACCAAATGATCAAATGCCGTCAGCTCTCCAGCCGGGCGGATGATGCCCGCTGTAAGAAACGTTGTGCCAAGAAGCGTTCCTGCGGCAAGCACAAATGCAACCAGGAGTGCTGCATCGATATCGACCACGCTTGTCCTTTGCCCTGCAATCGCACTCTGTCCTGTGGCCGACATAAGTGCGATCAACCCTGCCATCGCGGCAACTGCCCTCCCTGTTATCGCAGCTCTTTTGATGAACTCTTCTGTGAATGTGGGGCCGAAGTTATTTATCCGCCTGTGCCTTGCGGTACCAAGCGTCCGACTTGCAAACGTCCCTGCTCGCGTCGCCATCCCTGCGAGCACGCGCCCCAACACAACTGCCACTCGGCTTCCACTTGTCCACCCTGTATGATTTTCACCACTAAATGGTGTCATGGCCACCATGAGCAACGCAAGACTATTCCCTGCTCGCAAGCCACATTCAGTTGCGGTCTGGCCTGTGGCCAGGCGCTGCCTTGCGGTCGtcataaatgcataaaacCCTGTCACGAGGGTGCTTGTCAGGCATCTGGTGAACTGTGTCGTCAGAGCTGCACGACTCTGCGTCCCCATTGTGGCCACAAATGTGCTGCCCCCTGTCACGATGGAGTCTGCCCTGAGACTCCCTGCAAGGAGCAGGTGGAGGTTCAATGCGAGTGCGGTCATCGTAAGCAAAATCGCAGCTGCCACGAGCTGGCCCGAGAGTTCAGTCGCATAGCTACGGCTCAGCTGGCCTCTTCCATGGCGGAAATGTCACGCGGCAATTACATGGAGCTGAGTGAGATCTTGGCACCtgttaaaattaacaaaaccaACCGAACACTCGACTGTAACGAGGAGTGCCGAGTAGTAGAACGCAACCGGCGCCTGGCTATTGGACTACAAATCCGTAATCCAGACACACAGCAGAAGTTGCTAACCAGGTACTCTGACTTTGTACGCACCTTTGCCAAGCGAAATCCCGTGCTGGTCAAGTCCGTGTATGAGACTCTCACTGATCTGGTGAAGCTAGCCAAGGAGAGCAAGCAAAAGTCGCGCAGCCACTCCTTTCCCACAATGAACCGTGAGAAGCGTCAATTGGTTCATGAACTCTGTGAGATGTTTGGCGTGGACTCGGTATCCTATGATAAAGAGCCCAATCGCAATGTTGTTGCTACGGCCCACAAAGATCGGTCCTGGATGCCTGCCACTAGCATTATGGAGGTTATAGCACGCGAGTCGGGACAACGCCGAGTACCCGTGCCTAGTTGGAGTTTCAAGAAATAG
- Protein Sequence
- MAEFWQQMSGDENTATSIPINSDESCNGTSQNSRTSDAPRNNNYVDFNQFIMNCRPELYSSTNTLSYQPHQNYSAGGAFGAASSSSNNILYHTGSSTQSLNFDMYTHFGNNPFAANFSLSTSKLQADAPEFVPNFATLSLGPSETTNGNEGTTDNFTHANGHGPGTNTANPLQLTKAIETADLNTNRPSGSNNKLPYRDRDPDRESKPSSSRQRREYRAEREDRNERKKQQRYDNHRSNKRRDDWNRNRDRLNGFRVDDLDTSNESPLPSPEKKKSSSPKQLENEKLSQREKLVRDIEQRRLECLVCVEPIKAHHAVWSCQNCYHVLHLKCTTTWASSSKVDNGWRCPACQNVLEEVPREYFCFCGKLKNPPVTRTELAHSCGEVCCRIEGCNHACTLLCHPGPCPPCQSNVQRTCGCGKETKTMQCALKEEISCGAECGKLLNCEQHTCHSQCHVGKCTPCEEKIDQTCHCGKQQREVLCTRETHDRRHYSCSKPCGKDLACGSHKCKDSCHAGPCRPCKLSPSQVTSCPCGKTPMPPNQRSSCLDPIPTCESVCGKTLRCGKPAHPHQCASKCHLGQCPPCNKQTAVKCRCGHMDQMIKCRQLSSRADDARCKKRCAKKRSCGKHKCNQECCIDIDHACPLPCNRTLSCGRHKCDQPCHRGNCPPCYRSSFDELFCECGAEVIYPPVPCGTKRPTCKRPCSRRHPCEHAPQHNCHSASTCPPCMIFTTKWCHGHHEQRKTIPCSQATFSCGLACGQALPCGRHKCIKPCHEGACQASGELCRQSCTTLRPHCGHKCAAPCHDGVCPETPCKEQVEVQCECGHRKQNRSCHELAREFSRIATAQLASSMAEMSRGNYMELSEILAPVKINKTNRTLDCNEECRVVERNRRLAIGLQIRNPDTQQKLLTRYSDFVRTFAKRNPVLVKSVYETLTDLVKLAKESKQKSRSHSFPTMNREKRQLVHELCEMFGVDSVSYDKEPNRNVVATAHKDRSWMPATSIMEVIARESGQRRVPVPSWSFKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -