Basic Information

Insect: Scaptodrosophila latifasciaeformis
Gene Symbol: -
Assembly: GCA_037075145.1
Location: JBAMCM010000217.1:16795037-16809046[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.6 1.3e+02 3.5 0.1 3 21 482 500 480 504 0.91

2 13 0.038 3.2 8.6 0.1 2 23 526 548 525 548 0.89

3 13 0.027 2.3 9.1 1.1 1 23 565 588 565 588 0.95

4 13 0.049 4.1 8.3 1.0 1 22 593 614 593 617 0.90

5 13 0.0099 0.83 10.4 0.2 2 23 661 683 660 683 0.95

6 13 0.35 29 5.6 0.1 1 19 688 706 688 707 0.94

7 13 0.42 35 5.3 1.1 2 23 729 750 728 750 0.91

8 13 3.2e-05 0.0027 18.3 1.7 2 23 762 782 761 782 0.97

9 13 3.3e-06 0.00028 21.4 2.2 1 23 788 811 788 811 0.98

10 13 0.00036 0.031 14.9 1.2 1 23 835 857 835 857 0.97

11 13 0.0092 0.78 10.5 4.1 1 23 893 917 893 917 0.97

12 13 0.0029 0.25 12.1 1.9 1 23 926 949 926 949 0.96

13 13 0.0035 0.29 11.9 4.2 1 22 955 976 955 980 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.6	1.3e+02	3.5	0.1	3	21	482	500	480	504	0.91
2	13	0.038	3.2	8.6	0.1	2	23	526	548	525	548	0.89
3	13	0.027	2.3	9.1	1.1	1	23	565	588	565	588	0.95
4	13	0.049	4.1	8.3	1.0	1	22	593	614	593	617	0.90
5	13	0.0099	0.83	10.4	0.2	2	23	661	683	660	683	0.95
6	13	0.35	29	5.6	0.1	1	19	688	706	688	707	0.94
7	13	0.42	35	5.3	1.1	2	23	729	750	728	750	0.91
8	13	3.2e-05	0.0027	18.3	1.7	2	23	762	782	761	782	0.97
9	13	3.3e-06	0.00028	21.4	2.2	1	23	788	811	788	811	0.98
10	13	0.00036	0.031	14.9	1.2	1	23	835	857	835	857	0.97
11	13	0.0092	0.78	10.5	4.1	1	23	893	917	893	917	0.97
12	13	0.0029	0.25	12.1	1.9	1	23	926	949	926	949	0.96
13	13	0.0035	0.29	11.9	4.2	1	22	955	976	955	980	0.94

Sequence Information

Coding Sequence: ATGGACTCTGTCGATTTGGATGATACGCATTTGTGCATCAAGTGTAATGCTACCATTCTGGGTCTCGACAAGTACATCAGTCATCGCAAGCAGAATTGCCTGAGTGCTGAGGATCCCAAGAATACCGTTatacctacaacaacaagtgagAATCGAAGTCAAGTGGAAGTACCCTGTACGGTGATCGGACGCACCAACTTGCACAACAGCTATGTCAGCTTTAATTTTCCCGAACCCGAAGCTCCGAGCAGCTATCTACGTAAGACTGCCGCCAGTCATGGTGGCAAGACTTCCAAGTCCCTGACAGATGCCTATGACTTGACCTATGAGCTGGGAGCCGATGTCTTCTTCTCTTCGCTCCAGCTGCAGAGTGTGCAGTCGAGCTCGACGCCAGGCACGACGGGTGGCAAGACCGGCAGCAGCAGTGCGGGAATCTCACGTCAAAGGGAAAATAGAGAAGAAGAGACTTGGCCTGAACCTGCACACCCTTGTTCCAGCTCGTCTCTCCTGCTagaagacacaaaaaaacagGACGAAAGCGTCTTCAAGCCATTGAAGTTCCACTTTCCCGAGGCCAGTGAGGAGGAAGAGGATGAAGATGAAGATTTCTTTGGCGAAGATGATGACGAAGACGAAGATTATGATCCCAGAGTAGAGCATGCCACAGGTCACAAATGGCGTCAAAGCCCACCAGCCGTTCCGGCCACCCATACAGGAGGCAAATGGAAGCCCGAACATCGACCTCACCTGCCTGCCGCGAGCCACATGGAGCGCATCTCCCCCAATTGGGATGACCAAGTCGATGAGCCCGAGGATCCTAAAGACACCACAGCCCAGCATCCTCCTGAAGATCATACCAAAGGCAAATGGGTACCCGGCAGCAAAGTCCAGCGTCTCGAGTACCGCGAGAACATCGACCTCACGAAACTCACACGACCCACTACCACCTACTGGTGCAACATTTGCTGTCGCAAGCTCAAGAGCCGCTGCAGCTATGATCAACACCTCCAATCCAGCTACCACAAAAAGCGAGCCGAGGCTGAACGCCAGCTAGAGCAGGCCACTCTGGGCGGTAGCCTGAATATAACCAAGGAATTTGAGCTCATCAAGACACCAGCAGAGTCAGGCGAACCTCAAAGCCAACGTCGACGCCGGCGCACGAACCTCTTACGTTGTGATCTCTGCCGCCACAACATAGCTCGACATTTAATGGGGAAGCATCTCATCTCCCACTACCACTACCGGCGGCTCCAGCAGCAAAGCATCGAACGCCGTCAAAGTTCCCTCCACCTGATACTGGAGCATATGCCCAGCATTGTGCGACAGGCCCCCTTTCAATGCGAGCCCTGCCATTTCTATGCCAATACCGAGACGGCCTTTCTATGCCACTGGCGCTCCACCGAGCACATGGAATGCTCCAGTCGGCTAGGCGGTAATTTCTGGTGCAGCTACTGCCGATTCGAAAGCAGCAGCAATGAGGATATGTGGCAGCACTTACTGGGTCCCGACCACAAGGAAGTCCTTCTGGCAGTCAATCGCTCTGTGCCCATTTGCATAGCCCAAAGACTGCCTCTGACCTGCTCCGTCTGTGGCGAAAACTTTCTCTATAATGTCGAGCTAAGGCGTCACTTTGCACTGGCCCATCCCGGCTTAGTGGCCACATCCACTGCTGCCGACGACTACCAATGCCGCTTCCGTTGTGGCATCTGCGGGCAACCGCAGCGCTCCCGAGTAGCCCTACAGCGTCACGAGAAGCACAAGCATCGCCAGACCAAATACTTTTGTTCCATTTGTCATCTAGAGTTCGATTCTGCCATTCAAGCTCGACGGCATCGTAACCTTATGCAACACAAGAAACAGGCCAAGCCCTTGGTCAGTGATGATCAAAAGGATCTCGAGCATATGCTGCAGGCGGTGCTGGGAGATCAGGCCATTTTGGAGCCCGCAGCTGTTCCTGCCAAAAAGAAGCATCGCATCCTATCTTGCTCTGTGTGCAAACAAAACTTTGATACCCTTGAGGAAGTCACCCAACATCGCCAAGTGGTTCATAATCTCGATAATTATCCCTGCCTGAGTTGTGGTCTCAATTTCCAATCGTCTCAGGCCCTGGGCAGACACACGCCCACTTGCCAGCCCTTGGCCTCAACATCGTCGGCTGCCCAGGCCAACACTTCCGGCCAATGGAATTGCGACCAATGCAATTTCAGGGCCACCTACCAATCCGACTTGCTATACCATCGATTCTTCCACACCCAAAAATCTATCAGCAAGAACGAGCTACTTCAATGTCCTTTGTGCCCCAAACATTTCCGCAAGGATTCGCTACGTGCTCACCTGAGAAATCACACAAACGATCGTATTTTCGAGTGCCCCAAATGTGAGGCCAAATTCGCCAGAAGACACAATCTAAAGAACCATATCAACACGAGGCACGAAAAGAAGTCCGAAAGTGCCAAGGAAGACCCAAAGACCAGACCACCCAACCCCAGACCCAAGCAGCAATTTCAATGTGAAACCTGTGGCAAAATTCTAGCTaaaaaaCATTCCCTTAAAATTCACGAACTCAGCCACACTCAGAGGGAGCGAAATTTTCATTGTCCACATGAGGACTGCCAATTCTCGGGGCTAACACAGGAGAGGCTGAACATTCATTTGGTCTCCCATGCCCAGGGTTGCCACAAAtgccaaatggaaaattgcGATTATGTGGGCAAAAGTGAAACGCATCTGAAGAGACACTTGAAGTCCCACTTGGATACCGAATCCGGTAAATGGTTTGCCTGCGATCAATGTGACTTCAAGGCCCGAATCAAAGGACATCTCCGGCGACACATACGCTCGCGTCACACCGATGAGAAGCCCTTTAAATGTCAATATTGCAGCTTCGAATGCAGCAATTTTGACAATCTACGTAAGCACATTTTAAAGACCGGAAAGCATCCCGGAAAATTCATCTACGAATGTGAAGCTTGTACGGAAATGAAGACCAACAATTTCAGGGAATATCGAGCCCACTTGTtgatacataaaaaataa
Protein Sequence: MDSVDLDDTHLCIKCNATILGLDKYISHRKQNCLSAEDPKNTVIPTTTSENRSQVEVPCTVIGRTNLHNSYVSFNFPEPEAPSSYLRKTAASHGGKTSKSLTDAYDLTYELGADVFFSSLQLQSVQSSSTPGTTGGKTGSSSAGISRQRENREEETWPEPAHPCSSSSLLLEDTKKQDESVFKPLKFHFPEASEEEEDEDEDFFGEDDDEDEDYDPRVEHATGHKWRQSPPAVPATHTGGKWKPEHRPHLPAASHMERISPNWDDQVDEPEDPKDTTAQHPPEDHTKGKWVPGSKVQRLEYRENIDLTKLTRPTTTYWCNICCRKLKSRCSYDQHLQSSYHKKRAEAERQLEQATLGGSLNITKEFELIKTPAESGEPQSQRRRRRTNLLRCDLCRHNIARHLMGKHLISHYHYRRLQQQSIERRQSSLHLILEHMPSIVRQAPFQCEPCHFYANTETAFLCHWRSTEHMECSSRLGGNFWCSYCRFESSSNEDMWQHLLGPDHKEVLLAVNRSVPICIAQRLPLTCSVCGENFLYNVELRRHFALAHPGLVATSTAADDYQCRFRCGICGQPQRSRVALQRHEKHKHRQTKYFCSICHLEFDSAIQARRHRNLMQHKKQAKPLVSDDQKDLEHMLQAVLGDQAILEPAAVPAKKKHRILSCSVCKQNFDTLEEVTQHRQVVHNLDNYPCLSCGLNFQSSQALGRHTPTCQPLASTSSAAQANTSGQWNCDQCNFRATYQSDLLYHRFFHTQKSISKNELLQCPLCPKHFRKDSLRAHLRNHTNDRIFECPKCEAKFARRHNLKNHINTRHEKKSESAKEDPKTRPPNPRPKQQFQCETCGKILAKKHSLKIHELSHTQRERNFHCPHEDCQFSGLTQERLNIHLVSHAQGCHKCQMENCDYVGKSETHLKRHLKSHLDTESGKWFACDQCDFKARIKGHLRRHIRSRHTDEKPFKCQYCSFECSNFDNLRKHILKTGKHPGKFIYECEACTEMKTNNFREYRAHLLIHKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -