Basic Information

Insect: Scaptodrosophila latifasciaeformis
Gene Symbol: -
Assembly: GCA_037075145.1
Location: JBAMCM010000479.1:461237-463750[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.6 1.3e+02 3.5 0.3 3 23 38 59 38 59 0.96

2 8 0.24 20 6.1 0.3 1 23 484 506 484 506 0.96

3 8 0.005 0.42 11.4 0.6 1 23 514 536 514 536 0.97

4 8 0.00036 0.03 15.0 1.4 1 23 545 567 545 567 0.98

5 8 8.2e-06 0.00069 20.1 0.5 1 23 617 639 617 639 0.97

6 8 0.19 16 6.4 11.7 1 23 647 671 646 671 0.96

7 8 1.8e-06 0.00015 22.2 5.5 1 23 677 699 677 699 0.97

8 8 3.1e-05 0.0027 18.3 0.0 1 23 705 727 705 727 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.6	1.3e+02	3.5	0.3	3	23	38	59	38	59	0.96
2	8	0.24	20	6.1	0.3	1	23	484	506	484	506	0.96
3	8	0.005	0.42	11.4	0.6	1	23	514	536	514	536	0.97
4	8	0.00036	0.03	15.0	1.4	1	23	545	567	545	567	0.98
5	8	8.2e-06	0.00069	20.1	0.5	1	23	617	639	617	639	0.97
6	8	0.19	16	6.4	11.7	1	23	647	671	646	671	0.96
7	8	1.8e-06	0.00015	22.2	5.5	1	23	677	699	677	699	0.97
8	8	3.1e-05	0.0027	18.3	0.0	1	23	705	727	705	727	0.99

Sequence Information

Coding Sequence: atgaGTGTGTTGGCATATCCACGGTCAAACGACGAGGAGATTTTCCGTCACTGCACCAAGAATTGTGGTGTGGTGACAGCCACTGAAGATTATCAATCTTTTGCCTTGGGCTGCGTCTATTGCAGCGAGAAGTTCCTTTATTTCGATGCCTTCATAGGACACATGCAGACCATGCATTTAGAAGATTCCGAAGACCAAAATCAAGGCGAGAATAGCCTATTGAGCGCTGAGGGCATAGACCCAGCCACTATGGACGATAGTGGTAGCATGAACTTTCGTTTCAGTTCACCCATTTCCCTCGCCCACACCTCACATCTGGGCAATGGCAACCTTGCTTTCGACGAGATTGAAGACTTAACAGATGCAGACACTTCGCTGCTCCAGCCCCAAGTAATGGTCCAGCAAGAGCTACAAGAACTCGATACCAGCCTAGAAGATGAGCAATCCGATtccgacgatgacgacgaagacgacgacATCACCATGCTGCCACAGTCTAGCATTCTTCCAGACAGCACACGCTTGAAGCTTCCAATGCCACCGCAACGTCCAACCAAAAGCTATGTGAATGTGAATAACGAGCCCCTCCTGCCCGACGACGATTGCTGCTTGGACGAGGAAGATCAACATTTCATGGATGACAATTCCGGAGAACACACTGACTATTTGCAATACAATAGCAGCAACCGCCGCCAACGCAGGGAAAACGATTTCCTCAGCTACGATGAAATGGTCGAGGAGTCTCTACAAGGcATCGATCGCGGTCTCACCATGCACATCAAGGATCGCAAAATGATTGAATTTCTGATCAACTCGTACAAACGCAATCCCTTCCTTTGGAATCACACTCACGCCCAATTTCGTGATCGTGTCAAGCGCGCCCGCTTCCTCGACTGGATTGTACTCGAGTTCAAAAACCGTTTCAACATTTCCCTGGCCAAAGATGCCATCACCCGCAAATGGGACAACCTACGAACGGTCTACAAACGCGTATGCAATCGCATGGCCCTCGAAAATACAAACATCAGCACTCTCTGGTATTTCAAGGAGCTGCATTTCCTCAACGAGGTCTACAGCTACCACACCAAAATGTCCGATACTGTTGTCAAGGAGACTTCGTATCGCCGGCGTGTCTCGGCCATTTGGAATGACACCTCCACTGCCCAATTGCTGGTGATGGTGAAGCGCTATCAATGCTTTTACAATCGCTTCGATCCGGACTATCGCAGCAAGGAGAAGCGCGGCGAGGCGTTGCAGCAAATGGCCATAGAACTGCAGCATATGATCCATGTGACCACCATACAAATATCGAAACGCATCTCCCAGCTACGCTTCGACTATTCCAAACAGAAAATGGAGCGTCTCAGCTGCGAGCGCACCGGACGCAGCTTCATACCCAACTATCTGTACTACgatcaaatgaatttcatgGATGACGATGTGCCGCCCTTCAAATGCCCGCACTGCATTGAAATAGTCCAGACGCTGCGCGAACTGGATCTCCACATGCTCTCCCATCAGCCCACCCCCAGTGGCGGCTACTATTGCTACGTCTGCAACATACAATTCCAGAATCCGGCCGAGTTCGAGACCCACAAGCAGCTCCATCTCGGCACCGACAATGAGGTCAAATACAATTGTGAACTGTGTAGGGCCAGTTTCCGCAAGAAGTCCAACTATGATGAGCATTTGCGACTCCACAATGATGAGCTATTCCTGCCCTCGCTGACCCTCGATCACAGCATCATAGACAACTCTGGCGGTGAGGGGGCAGCCGGATCGCGTGAGCGCCGCGAAAACGGCCCCGGCGGCCCCGACGACGATGAGAACAGCTCGAGCTATATGCCCTTCCCCTGCGAAGTCTGCCATCGCACATTTGCCACCAGCGGATACCTGAATGTCCATCGCATTGTCCACAAGGATGAGCGGGAGCGCTGTCACAAGTGCTCCCATTCTCAGTGCCACAAGACCTTCGTCTCCCGGCACGGCCTACTCAAGCATGTCAAGCAGCACTACAACAATGAGGAATTCAAATGCAATACTTGCGGCAAGACCTTCAAGTCCTCGAAAAATCTGCAGAACCACAAGCATATCCACGACAAAATCAAACGTTATGTCTGCCCCATCTGTGGCTCGGCCTTTGCCCAGGCAGCCGGTCTCTATCAGCACAAGCGCCGACACAATCGTCCCAGTGGCACGGGTCATGTGGTTGGCACAGCCTCTGccggtggcggcggtggtggtggtggctccGCACGTCCCCCTCCTAATACCTTGTAA
Protein Sequence: MSVLAYPRSNDEEIFRHCTKNCGVVTATEDYQSFALGCVYCSEKFLYFDAFIGHMQTMHLEDSEDQNQGENSLLSAEGIDPATMDDSGSMNFRFSSPISLAHTSHLGNGNLAFDEIEDLTDADTSLLQPQVMVQQELQELDTSLEDEQSDSDDDDEDDDITMLPQSSILPDSTRLKLPMPPQRPTKSYVNVNNEPLLPDDDCCLDEEDQHFMDDNSGEHTDYLQYNSSNRRQRRENDFLSYDEMVEESLQGIDRGLTMHIKDRKMIEFLINSYKRNPFLWNHTHAQFRDRVKRARFLDWIVLEFKNRFNISLAKDAITRKWDNLRTVYKRVCNRMALENTNISTLWYFKELHFLNEVYSYHTKMSDTVVKETSYRRRVSAIWNDTSTAQLLVMVKRYQCFYNRFDPDYRSKEKRGEALQQMAIELQHMIHVTTIQISKRISQLRFDYSKQKMERLSCERTGRSFIPNYLYYDQMNFMDDDVPPFKCPHCIEIVQTLRELDLHMLSHQPTPSGGYYCYVCNIQFQNPAEFETHKQLHLGTDNEVKYNCELCRASFRKKSNYDEHLRLHNDELFLPSLTLDHSIIDNSGGEGAAGSRERRENGPGGPDDDENSSSYMPFPCEVCHRTFATSGYLNVHRIVHKDERERCHKCSHSQCHKTFVSRHGLLKHVKQHYNNEEFKCNTCGKTFKSSKNLQNHKHIHDKIKRYVCPICGSAFAQAAGLYQHKRRHNRPSGTGHVVGTASAGGGGGGGGSARPPPNTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -