Slat014258.1
Basic Information
- Gene Symbol
- L_1
- Assembly
- GCA_037075145.1
- Location
- JBAMCM010000443.1:987674-994934[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1e-05 0.00088 19.8 2.9 1 23 172 194 172 194 0.98 2 19 0.36 30 5.5 6.2 1 23 200 222 200 222 0.97 3 19 1.7e-07 1.5e-05 25.4 3.2 1 23 228 250 228 250 0.99 4 19 1.3e-05 0.0011 19.5 0.4 1 23 256 278 256 278 0.99 5 19 0.21 18 6.3 0.1 2 23 348 371 347 371 0.89 6 19 0.00068 0.058 14.1 0.4 2 23 392 414 391 414 0.96 7 19 0.073 6.2 7.7 0.7 1 23 515 537 515 537 0.97 8 19 0.012 0.97 10.2 0.1 3 23 546 566 546 566 0.93 9 19 0.0022 0.19 12.5 0.1 1 23 574 598 574 598 0.93 10 19 9.7 8.2e+02 1.0 0.2 2 20 604 622 603 623 0.91 11 19 1.8 1.5e+02 3.3 1.7 2 23 634 656 633 656 0.95 12 19 0.0026 0.22 12.3 1.1 1 23 711 734 711 734 0.97 13 19 2.2 1.8e+02 3.1 1.0 2 23 920 943 919 943 0.89 14 19 0.0025 0.21 12.3 3.8 2 23 952 974 951 974 0.96 15 19 0.041 3.5 8.5 0.1 1 23 980 1002 980 1002 0.92 16 19 0.021 1.8 9.4 0.1 2 23 1010 1031 1009 1031 0.93 17 19 0.48 41 5.1 0.1 2 23 1157 1178 1157 1178 0.94 18 19 0.011 0.89 10.3 0.0 1 23 1188 1210 1188 1210 0.96 19 19 0.00023 0.019 15.6 1.2 1 23 1217 1239 1217 1239 0.97
Sequence Information
- Coding Sequence
- ATGATGGCTTTAAAAATGCTTTATCGCGGTCCCAGTTCGCGTCTAGagaatttaattgagaaaattCAAGCCACCAAGGAAATTACAGCTAAcgATATGTACTCCACACACACTTCCTCGAGCTACTCACCCTCGATTTCGGATGGCACCATGACACCCAATTCCCATCTGCCTCAGGAGCAGCACCCACACCTGCCTGCCCAACAGAGCGGAGGCGAAGCTTCCAAGACGAACGGCGAAAGCGGTGCTGGTGAAGAGCCACTGGCCACACCTCCACTCACACTGAAGTCCAAGAGGATGCCCCACCATttgcatcatcatcaccaccatcatTATCAGGCcttgaaaattgccaacaagTTGCGAAAAATCAATAAGGAAGCCAAAATGCAGGCGACCCTTGGAGGCGTCCCTGGAGGTGGGAGCACTGCCGGCAGCGGTGCCGGTGCCACTGGTTCCACAAAGTTTGATAAGTTGACAGGCGAGGGGATTAAGAGCAGAAGCGACGGTTCCTATCAGTGTCAGTTCTGTGATAAATCATTTCCGCGACTCGGTTACTTGAAACATCATGTGCAGagccATGCCGAACATTTGCCATTCAAGTGCGAGTACTGCGCCAAGTTGTTCAAGCACAAAAGATCTCGAGATCGTCATAAGAAATTGCATACCAACGAAAGGAACTACAAGTGTCCACACTGTGAAGCGGCATTTTCTAGAAGTGATCATTTGAAGATTCATATGAAAACCCATGACATACAGAAGCCCTTCCAGTGTAGCATGTGTAATCGTGGCTATAACACAGCAGCGGCTCTCACCTCGCACATGCAGAAGCATAAAAAGAATGCCGCCATTTTGGCAACCGGTGGTAATCCGAATGCCTTGAATTATAGTCCCCGTTCTACGGGCTCGGCCTCGAGCAATGGAAGCCTGAACAAGCGTCGCTAtgccttggctttggctgcctCGGCAGAGAGCAGTCCATCCAGTCGTTTGGACTTCCCCAAGAGAGCCCGCAATCATGCCACGCCCACGCCCCAGCTCCGTTGCAGCTATTGCCCCAAGGCGGAGTTCAGCAGCTTGGAGCAATTAAATGGTCACTTGCAGAATGCCCATGAGCATCCAACGCCGCCTGCGAAGACACCAACCACCGAAGAAAGTGGCGGTTTTCAGCTAAGCTGTGAATATTGCACTATGAAGTTTGGCAACATTGCCGGACTTTTTCAGCACATGCGGACCACTCATATGGATCGTCTGAGCAGTCCCAACTCGTATTATGAGCACTTTAATCGATTGGCCACCACTGGAACGTTTAGTCCACGTCTTGCCCTAgaccaaatgccaaaaatcaaGCAGGATTTGCTAGCTAGCCCCAAGGATGGAATGAGAAGAGGCACACCACCCCACCACAAAGAGGGAGAGGAGGAGCCCACTGACCTTAGCAGTAGGAAGCGTGCAAGCAGCAGTGACATTCATTCACCCCACATTTCACCCAAACACTTGGTTCCACCAATGGGACAATCTCTGGCCTCTGGACCTGGCATCTTCTTTTGCAATCAGTGCAACGCCGGACTGCCCGACTTTGAAAGCTTTCGTCAGCACTTGAAATCCCATATAGCCGAGGGTCTACAATTGGGTTGTCCTCATTGTGGTCTCAGCTTGCCAGATCAAACGGAATACGAACGTCATGTTGTGGCCCACTTTCTCATCACTAGCTCCGAATATAATTGCTCAGCCAGTTGTAGTAAATCATTTGCCAAGGCTGAGGAACTCCAGCAGCATTTACTGGCTGAACATGTCTTGACCCTTCTGAAGTGTTCGCTGTGCTCGGAGCTCTGCGAAAACCAGGTGGCTATGCAACTTCACCTGGCCTGTGCCCACACCCAGGAGACCAAGCTGATGCGTTGCAGTGCCTGCCTTGAGCTGTTCCGCAATGAAACCGATTTCCATGTACACGTCAAGACGCGACATCAGCCCTTGACTTCCCAATTGACCAGCAATGGAAATGGCTCTTTGGGTGCAGTCAGTTCTCTGGCCACTGCCACACCCAATTCTCTGCAATGCATGTTCTGTCGAGTGGTTTGTGCTTCGGAATTGGAGATGCACTTTCACTTGGCTGCCCATGCCCGGCAATTCCGTTGTCCTTCTTGTCCGGAGACCTTCCATGTGGAATTTCTGCTGGATCGGCACATGCAGAGCCAGCATGGTGGCGCTGAACAGGAACTTCCAGCCAGTGACAAGGACAGCTACGAGGAGACTGCTTCTGCCAACGCTCCCGCCGCAACTCTCAGTCCTATGAATAGTCTCTATGTGAGCGCCCTCTTCGGAGGTAAGCCTCCCCTGCTGCCCCCCTTGACTgcagccaccaacaacaatagcagcatcCTCGACTACAATGTGGCCTTTGCAGCAGCTCAGCTCCAGCACAAGGGACTCTTTGCCCCACCACAAGCCTCGACAGCAGCCAGCAAATTTTACAGTCCACTCCAAGTGGACACCACTGGCCTGAAGCCACCCAATGCGGCCACAGCTgcagccgctgctgccgcccaTCCAGCCCTCATGTATGGTCTCAGTCAGCGATACTTCGATACCAACCGAGCTCTAATGGAGATGTATGCGGCACAGCAGTCAAAGACGTCGGCCAATTACTTTGCAGCCAGCCCTAAGGCTCCAGAACGGGAAAATTCGGCACGTTCCAGTGTAGAAGCCAACACACCTACGGCCTCTGCCCAGACCACACCCAACAATGCTGGACTTAGCTGCGGCATGTGCGAGCGACAAGACTTCCGCAGCGAGACAGAACTTCATTCCCACCGCAAAATTGCTCACAACATGAAAACGGGAGTGAGTCTACGTTGCGCCTACTGCGCAGGCAACTTTAAGTCTCGCAGCGAGCTGGAGCATCACATGAAGACGTGCCACAACTCCACGGGCAAGCACAAGTGTCTCATTTGTGATGAGGTATTTCCATCGCCGGCTATACTGGCCGAGCACAAATTGCAGCACTCCAAAGTGGGTCAGTCTGGCAAGTGCTCGCACTGTGGTAAGCCGCTGCCGGACGTGAATGCCTTCAAGGCTCATCTGGGTGAGCATggcactaacaacaacaacaataacaacacaagcaacaataacaatgcaGTGGGCAATGTGCCGGTGCAGTGCATCTGTTGCCGGCAGACTCTTCACTCCGACTTTGAGATAAGCTTGCATGCCAAATTCCACACCAAGTCAAGCAGCACTCTGCAAGAACCCGTGTGTGCCCTCTGCCTGGAGCCCATGCTATCATCCCAGAATAACTCCAGCAATTCAGAGGTACCAGCTCCGGCCAAAGTGTGTGAAAAATGCTGTCgaaaacataacctcaatcCCAAACAGCGTAAGCCCAATGCAGAGCCAGTCTATGACAATGGCACCCTCCATCCTCCAACCAACTCAGCCACAGCTCCTTCTTCCTATATCGAGAATCGCTGTAATCTCTGCAAGATGATTTTGCCAAATGCCAACAAACTCCAGGAGCACCTTGTGGAGCACACATTTGCCGGCACAGAAGAGCGTGGATTCAATTGCTACATCTGTTCGGCAGTCTTCACCGCCCCGGCCGGACTGCTCAATCACATGGCCGAGCATGGTGCCCAGGCCAGGCCTTATGACTGCAACCTCTGCCCCGAGAAGTTCTATTTCCGTGCTGAGCTAGAGCATCATCAGCGAGCCCACGATATGCGACAAATTGCCACACGACCCATCACTTTGCCCAAGCAGGAGACTCCTTGTACTACACCGAATCCCACTGTGAAGCAAGAAGTCTTTGAACCAGAAACTGCCTCCTCCCCTCCAGCAGCCACCAACCAGGAAGACGAAGAGTACATTGAAGTGGAACAAGTAGCCAGTGAGACACGTCTAGGTGTGGAGCCCGAACACCCAGAGCGTTCCAGTAGTCGGGCctaa
- Protein Sequence
- MMALKMLYRGPSSRLENLIEKIQATKEITANDMYSTHTSSSYSPSISDGTMTPNSHLPQEQHPHLPAQQSGGEASKTNGESGAGEEPLATPPLTLKSKRMPHHLHHHHHHHYQALKIANKLRKINKEAKMQATLGGVPGGGSTAGSGAGATGSTKFDKLTGEGIKSRSDGSYQCQFCDKSFPRLGYLKHHVQSHAEHLPFKCEYCAKLFKHKRSRDRHKKLHTNERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILATGGNPNALNYSPRSTGSASSNGSLNKRRYALALAASAESSPSSRLDFPKRARNHATPTPQLRCSYCPKAEFSSLEQLNGHLQNAHEHPTPPAKTPTTEESGGFQLSCEYCTMKFGNIAGLFQHMRTTHMDRLSSPNSYYEHFNRLATTGTFSPRLALDQMPKIKQDLLASPKDGMRRGTPPHHKEGEEEPTDLSSRKRASSSDIHSPHISPKHLVPPMGQSLASGPGIFFCNQCNAGLPDFESFRQHLKSHIAEGLQLGCPHCGLSLPDQTEYERHVVAHFLITSSEYNCSASCSKSFAKAEELQQHLLAEHVLTLLKCSLCSELCENQVAMQLHLACAHTQETKLMRCSACLELFRNETDFHVHVKTRHQPLTSQLTSNGNGSLGAVSSLATATPNSLQCMFCRVVCASELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSQHGGAEQELPASDKDSYEETASANAPAATLSPMNSLYVSALFGGKPPLLPPLTAATNNNSSILDYNVAFAAAQLQHKGLFAPPQASTAASKFYSPLQVDTTGLKPPNAATAAAAAAAHPALMYGLSQRYFDTNRALMEMYAAQQSKTSANYFAASPKAPERENSARSSVEANTPTASAQTTPNNAGLSCGMCERQDFRSETELHSHRKIAHNMKTGVSLRCAYCAGNFKSRSELEHHMKTCHNSTGKHKCLICDEVFPSPAILAEHKLQHSKVGQSGKCSHCGKPLPDVNAFKAHLGEHGTNNNNNNNTSNNNNAVGNVPVQCICCRQTLHSDFEISLHAKFHTKSSSTLQEPVCALCLEPMLSSQNNSSNSEVPAPAKVCEKCCRKHNLNPKQRKPNAEPVYDNGTLHPPTNSATAPSSYIENRCNLCKMILPNANKLQEHLVEHTFAGTEERGFNCYICSAVFTAPAGLLNHMAEHGAQARPYDCNLCPEKFYFRAELEHHQRAHDMRQIATRPITLPKQETPCTTPNPTVKQEVFEPETASSPPAATNQEDEEYIEVEQVASETRLGVEPEHPERSSSRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -