Slat000872.1
Basic Information
- Gene Symbol
- Csrnp1_1
- Assembly
- GCA_037075145.1
- Location
- JBAMCM010000073.1:4378919-4379560[-]
Transcription Factor Domain
- TF Family
- CSRNP_N
- Domain
- CSRNP_N domain
- PFAM
- PF16019
- TF Group
- Unclassified Structure
- Description
- This presumed domain is found at the N-terminus of cysteine/serine-rich nuclear proteins. These proteins act as transcriptional activators [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.1e-21 9.4e-17 61.9 0.1 2 67 41 105 40 109 0.84 2 2 2.7e-39 2.8e-35 122.4 14.4 107 217 101 211 98 212 0.96
Sequence Information
- Coding Sequence
- atgtcaaaggaACCAGTAAGCTTTTCATCAGAAAATCGAACTAAATTCGAAATCTTTTGTGACGAAGGCGCTGGGTTCCTTCGTAAAGATGGAGAGCAGAGCTCTTCGGTTGATAAGTCAAAGAAACCCTCTGTGACTTTTCAAAATGTCGAGGTCTTCTACTTTCTCAGGCAGCAGGGCTACAGTAGTGTACCCAGCACCAGAGGATGCAGCCTGGGCATGGATGCTAAGCATTTCTCCTCTGAACTTTTGACTCTGGACGAGTGGGAAGATCGTCATCAAAATCGTAAGGAAATGCATCAGGAGCATAAAGAGCAGTTGCTACCCCTGCTACCCAACCAGAGGCGGGCTCTGCTCAGAGCTGCCGGTGTGAAAAGTGTGGATAGGTGTGAGACTGCTGAGTGCAACTCTCTACGTGTCTCCCGGGAGACCAGTGGATGTACTTGCAAGGGACTCTGCTATCCGGAGACTTGTTCTTGCTGCTTGGCCGAAGTGCCTTGTCTAAAGGAGAGCGTAAAGTTTCCCTGTAATTGCAATGGCGAGTCGTGTCAGAATACTCTCGGTCGGGCTGAATTTGATGTTGTGAGTGTGAGAGATCACTTCGTTGAGACTATGAAACGTCTAAGCCTTCATGACAATTAG
- Protein Sequence
- MSKEPVSFSSENRTKFEIFCDEGAGFLRKDGEQSSSVDKSKKPSVTFQNVEVFYFLRQQGYSSVPSTRGCSLGMDAKHFSSELLTLDEWEDRHQNRKEMHQEHKEQLLPLLPNQRRALLRAAGVKSVDRCETAECNSLRVSRETSGCTCKGLCYPETCSCCLAEVPCLKESVKFPCNCNGESCQNTLGRAEFDVVSVRDHFVETMKRLSLHDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -