Slat005010.1
Basic Information
- Gene Symbol
- bab1_1
- Assembly
- GCA_037075145.1
- Location
- JBAMCM010000123.1:853512-855320[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-17 2.2e-14 53.1 0.0 1 43 55 98 55 100 0.95 2 2 1.8 3.7e+03 -2.1 1.5 6 13 196 203 184 218 0.60
Sequence Information
- Coding Sequence
- ATGATGGAGAACTCACATGCTTGGATGGGTGCCACAGGCTCCACATTGGCAGCAGACAGCTATCAATATCAATTGCAGTCGATGTGGCAAAAATGTTGGAATACCAATCAAAATCTAATGCATCACATGCGCTTCCGCGAACGTGGTCCTCTCAAGTCCTGGCGTCCCGAGACCATGGCAGAGGCAATCTTTAGTGTGCTGAAGGAGGGACTCTCCCTGTCCCAGGCAGCTCGCAAATATGACATACCCTATCCCACATTTGTTTTGTATGCCAATCGGGTGCACAATATGCTGGGACCCTCCATAGATGGTGGGCCGGATTTGCGACCCAAGGGGCGTGGCAGGCCACAGCGCATCTTGTTAGGCATCTGGCCGGATGAGCATATCAAGGGTGTGATCAAGACGGTGGTATTTCGGGATGCCAAGGATATGAAGGATGACACAATGACAGCCCACTTGCCGCCCTATGGACGTCATTCGCCCGTGTTTCCCTTTCAGGATATGCCGTTGAACTATCCAGGCGCTAGCAGTCCAGGCGGCTCCGGCAGTGCAGTGTCCGGAGATCAGCAAATGTCCCAGGAAACAGCCGCTGCCGTGGCTGCGGTGGCCCACAACTTGCGCCAGCAGATGCAAATGGCGGCAGCCGCCCAGCATCAGCATGGTGGCGAAGGCGGAGCCGGACCACCACCTGGTCTCTTCAATCTGCCGCCTCACTTGCAACCACATGGCGGGCCCGGTCTAAGCCTGCCCAAGGCCAGCATCTCCCCGGCGCTGAGCAGCGGCTCCAATCCTGGCCTGGGTCCCAGACATGCCCCCTCGCCCTGCGGTCCGGGCGTCATACCCGGCCTGCCCAATCTGCCGCCCAGCATGGCCGTGGCCCTGCACCGGGATCCCACCACCGCGGCCCTGCtcagccagcagcagcaacaccaccTCCAGCAACTGcagctccagcagcagcacgccctccaccagcagcagcaacaggtgGCCGCGGCCGCCGCAGCTGCCCACCACCTGCAATCCCACAAGTCCGGTTTCGGTGCCAGTTCCATGCCACACACCGTGGCAGCcgcggcagcagctgccgctgccacgGCCACTTCTGCCGCCGTAGtccaacaccagcaacaacaacaacagcagcaggccCAGCAGCACGCCCAGCAGCAggctcagcagcagcaacaggcccagcaacaccaacagcagtTGCTCGGCGACAAAGCCAAATCTCTGGTCGAACGCAGACAGAGTAGTCCGCTGCGCAGCGAGACTCCGCGCCTGCACTCGCCCCTGGCCGATCTCGGCCTGGAAATGGCCGGCTTCAAGCGTGAATATTCACCCTCCAGACTCTTTGCCGATGACCTGGCCGAGCTGGTGGGTGGCgtctcctcctcctcgtcgGCCGCCACCACGGTGACCACTGCGGCGCCCACCACAAGTGGAGCCAATGCGGCTGCAACCGCCACCATGACAAGTGGTCCAGCCACCGATATAAGCTCCAGTGGCATTAAAGTCGAACCCATTACCACCAGCAGCgaataa
- Protein Sequence
- MMENSHAWMGATGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDMKDDTMTAHLPPYGRHSPVFPFQDMPLNYPGASSPGGSGSAVSGDQQMSQETAAAVAAVAHNLRQQMQMAAAAQHQHGGEGGAGPPPGLFNLPPHLQPHGGPGLSLPKASISPALSSGSNPGLGPRHAPSPCGPGVIPGLPNLPPSMAVALHRDPTTAALLSQQQQHHLQQLQLQQQHALHQQQQQVAAAAAAAHHLQSHKSGFGASSMPHTVAAAAAAAAATATSAAVVQHQQQQQQQQAQQHAQQQAQQQQQAQQHQQQLLGDKAKSLVERRQSSPLRSETPRLHSPLADLGLEMAGFKREYSPSRLFADDLAELVGGVSSSSSAATTVTTAAPTTSGANAAATATMTSGPATDISSSGIKVEPITTSSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -