Slat005145.1
Basic Information
- Gene Symbol
- ttk
- Assembly
- GCA_037075145.1
- Location
- JBAMCM010000123.1:2057964-2061854[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.3e-19 1.1e-15 57.2 0.0 2 45 599 643 598 643 0.97 2 2 5.8 1.2e+04 -3.7 0.3 3 11 677 685 677 688 0.82
Sequence Information
- Coding Sequence
- ATGTCCGTACAGCAGTTCTGTCTACGCTGGAATAATCATCAGCCGAATTTCATATCGGTGTGCTCATCGCTACTGCACAATGGCACACTGGTGGATGTCACGCTGGCCGCCGAGGGTCGGCAGCTGCAGGCCCACAGAATAGTCCTATCGGCCTGCAGTTCATATTTTCAAGCACTCTTCACAACGAATCCGTGTCAGCATCCGATTGTCATACTGAAAGACGTGCAGTACGATGATCTCAAGACGATGGTCGACTTTATGTACTACGGCGAGGTGAATGTGTCCCAGGAGCAGCTGCCGCACATACTCAAGACGGCCGAGATGCTCAAGATCAAGGGGCTGGCCGAAATGCCCACGGACCCGGCCAATCTCACCAAGTCCGACAGCAAGTCATCCGGTGAGGGCACCGAGCTGGTGGGCCAGGCGGGAGCTGGTGGAGTGGCCGGTGCGGCCGCTGCCGCGGGCACCCTGGGagctggcagtggcagcagtgTGAGTGATTCTATTTGGAGCAACAGTGAGGCCCAGCAgttccagcagcagcaacaacaggcggcccagcaacagcatcaccaccatcagcagcagcaactgcaacagcagcaacaacaacagcaacaggctgcccagcagcaacagcagcatcatcatcaccaccagcaacagcagcagcaacagcaggcGGGCAACCAAGTGCAAGCGGCCCAAACGCATCACCACCAACTGAGACGAACTCCCTCGCCGCTGGGAGCTGGCACCTCACCGGCCATGCGTCGCAAGCGCTTGCGTAAATCCTCGAATAACGGCTCCGGGGAACGCAACAATACCGATGAGCAGCATAATGCTTCCTTAGAGGCAGCCAATGCTGCGGCCGCTGGCAGTGCCGGACTTAGTCTGGCTCAGATGAACCAAATCTCGTTTGGCAATGGAGCGAATACGGCAGCTGCCCTAGGCAATCTGGCCGGCCATCCGTTGCACGCCGCTAAAATGTTAAAGGAATCGGCCAGCACGGAGCTGGATCAGCAGCCACAGGACTCGGATCTGGATGACGGACACGgacacatacatatgcaaaTTAAGCCTGAAGTGGATATTGGTGGAGTGAATCAATCGATGCCCTTGGATATTTCTGGCGCCACAACACCCTCGGAACACGATGCACCCAACTCGCAATCGTCACATTCAGGTCTGCAATGGACAGTTGTTGACTCAAACTATTCGCGCTTCTCCCTGCCCGCCTGCCAGACCAACCTGATTGGCAATGGGGcgggcggcggcggcggcaccCAGAGCACCGGTGCCAACAGTAGTGGCGGCAACGGCGTAGGCACCAACGGAGGCGGCGGCACCAACGAACAgcgccaacagcagcagcacgaAGCCCAACAGCAGGCCAAcaaccagcagcaacaacaacaacagcatctcCAGCAATTGCActaccagcagcaacagcaacaacagcagcagcaagctgGGGCCTCCGGCCAGGCCTACTCGCCCCAGATCATAGCCGTCAACAATCTAGTCGGCAACTATGGCACAGCAGCAGCGCAGAACCTCTCACCCACATCACCCAACGAGTCAAATATGGTGCAATCGGTGTACAGTCAAGGACCCACGCCCACCCAGTCGCCGGTGCATACCGGGGCCGGGGCAGGTGCCGGCGGAGGAAGCGGTGGCTCTGGCAGCGGTAGTGCGGGCGGCGGCAACAGCAGTGCGAGCGGCAATGCCAGCAACAGTGCCGCCGGTGGCCAGGTTGTCAAGCGCAAGCGTTCAGTGAATCCACAGGGCGATGAGAATTTCATACGCGCTCTGGAGGCTGTACGTACCGGAGGCATTGGTTTCTGCAAGGCGGCGCGTCTTTATGGCGTCAACAATAGAACTCTCTGGCTGGAGTACAAGAAGCGCGGCTATCCGGTTTCCCGGCCCAGCATAAAGGCGCGCGTTGTTAAACAGGAGCCAAACTTGTCGCCCTCACCGACACCATCCACAAATCCCGGCGATGATACCACCAACGAAAACTATGAGACTTTAACGGCCGCCGTGGCGGCAGCGCAGACGGCTGCCCTCAATATGCAAATACCACCGCAGGCCGAGACGCCGACACCCTCGCTGATGTGTGCCCCCCACCATGCCAGTGCAGCGGCTGCCGGCACTGTGATGAGCCTGTTCGATGCCCGTTACATGGACTCGCCGGCGAGCCTGCATACCATGTCCCGACAGCGTTACATCGATACGACGGGTGCTGGCGCTGGCGCCGCGGCCACAGGCGCGGGCACCATTAATGTCAATCCGGCCGCTGCAATGAATTTACAGAGTATTAATTTTAACTCAATATAG
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHRIVLSACSSYFQALFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSDSKSSGEGTELVGQAGAGGVAGAAAAAGTLGAGSGSSVSDSIWSNSEAQQFQQQQQQAAQQQHHHHQQQQLQQQQQQQQQAAQQQQQHHHHHQQQQQQQQAGNQVQAAQTHHHQLRRTPSPLGAGTSPAMRRKRLRKSSNNGSGERNNTDEQHNASLEAANAAAAGSAGLSLAQMNQISFGNGANTAAALGNLAGHPLHAAKMLKESASTELDQQPQDSDLDDGHGHIHMQIKPEVDIGGVNQSMPLDISGATTPSEHDAPNSQSSHSGLQWTVVDSNYSRFSLPACQTNLIGNGAGGGGGTQSTGANSSGGNGVGTNGGGGTNEQRQQQQHEAQQQANNQQQQQQQHLQQLHYQQQQQQQQQQAGASGQAYSPQIIAVNNLVGNYGTAAAQNLSPTSPNESNMVQSVYSQGPTPTQSPVHTGAGAGAGGGSGGSGSGSAGGGNSSASGNASNSAAGGQVVKRKRSVNPQGDENFIRALEAVRTGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKARVVKQEPNLSPSPTPSTNPGDDTTNENYETLTAAVAAAQTAALNMQIPPQAETPTPSLMCAPHHASAAAAGTVMSLFDARYMDSPASLHTMSRQRYIDTTGAGAGAAATGAGTINVNPAAAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00904813;
- 90% Identity
- iTF_01319112;
- 80% Identity
- iTF_01319112;