Slat005149.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_037075145.1
- Location
- JBAMCM010000123.1:2068769-2070301[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.2e-16 2.5e-13 49.7 0.0 2 44 339 381 338 382 0.95 2 3 0.038 79 3.3 0.0 28 37 412 421 390 427 0.90 3 3 1.2e-18 2.4e-15 56.2 0.0 2 41 448 487 447 488 0.94
Sequence Information
- Coding Sequence
- ATGGGTCACTCTGCGACGATTTTAGATATACAGCGTATTTTGCGCAACGACACAGAAAGTTGCGAAGTGACGCTGGTGGCAAAAGATGGAGTGAGTGTTCAAGCACATCTTTTCGTGCTCAGCACTTGCAGCGACTTGATGCGAAATATTTTGGTGGACGTTCCGCCGGGCCATGAAGCCAAGATCGTTCTGCCCGATATTCGGGGGGACCTTCTGGAGAGTATGTTGTCATTCATTTACACAGGGGAGACCAATCTGCCCTCTGCGTATCTGTCAGAATTTCTGGAAGCTATAAACCTAATGGGCATCAAATCGGCCATCAGCTTCGAGTGCAATACGGCAATCACCGCCACGAACGCCAATGCAGAGAGTGTAGCCATGGAGACGGCCAAATCTATATCGGGACTCCAAATTGCTCACGCTGAACTGCTGGAAGAGGAGGATGTCGAGCAGGAGAATAGTGCTGTGGTAGCCAAATTGGAAGTGAGTGGAAGCTCGATTCTCACAAGctcacagcagcagccacggGCTCTTGAGTTTCTCGACGTCTACAACGATCAGCCAAAGATTACCACTTACTCCATTGAACACATGGGCGGCACGACGAGCGGCAATCAATTCATATTGACAGAAAATACAGGAACTTTCACCATCACACAGCCTGTGGCTAAAATTGATAACACAACGAGCAGCGTAACTGAAGTGGATGCCAACCAAGCAGCAGGCAGCGATGACGACGTTGACGAATCACAATTAATCGAGGAAGACTTTGTTGGCTCAACCGACCCACTAATTGATATGCCCGCTGGCATGGCCACCGACACTGAGGAAGTGGATATGGAGTCAGAAGCAGCCATGGCCGTAGAGGAGGACGAGGTGACCGAAGAAAAACTCTTCGAAGTGAAACCACGAAAACAGGTCGAAGTCCGACCGCGTCGTCCACATAAtcagaaatataagaaacaaCTCTCTCAAACATTTGCCGGATATAAGGGCGAGCTCAAAGACACCTTGAACGAGTCCTTAGAATTAGCCGTAGAAGCTGTGCTCACCGAGGGCTTGAGCCTCCAAAAAGCTGCCGATCGCTTCGACATCTCCAAAACAGTGCTCTGGCGTCGTGTGCGTAACAATCCCGATTACATGAAACACAATCGCGACAAGCCCTCGCTTGCCGAAGCCTACGAGCGCCTACAAAGAGGGGAGTCCCTGAAGAGTATCAGCCAAGATCTACAAATTCCCATGTCCACACTGCACCGCCACAAGGTGCGACTGGCCACCCAAGGACGCCTGCCCGAATTTGTGGCCTGCCGCCGACGCGACAACACACCCAAAGACGAATTACGCGATAAATTGGCCAAGGCGGTGCAAGCCTGCCTGGTCGAGGGTATGTCACAGAATCATGCAGCAAATCTTTTCGAGATTCCAAAGAGCACACTTTGGCGGCATCTCCAGCGACGGATCAACGACGTGGACCACAAGGTCAAAAAAGAGATTCTCGCCCAAGAAGAAGCGGAGGAGGAGATTTTAGCCTAG
- Protein Sequence
- MGHSATILDIQRILRNDTESCEVTLVAKDGVSVQAHLFVLSTCSDLMRNILVDVPPGHEAKIVLPDIRGDLLESMLSFIYTGETNLPSAYLSEFLEAINLMGIKSAISFECNTAITATNANAESVAMETAKSISGLQIAHAELLEEEDVEQENSAVVAKLEVSGSSILTSSQQQPRALEFLDVYNDQPKITTYSIEHMGGTTSGNQFILTENTGTFTITQPVAKIDNTTSSVTEVDANQAAGSDDDVDESQLIEEDFVGSTDPLIDMPAGMATDTEEVDMESEAAMAVEEDEVTEEKLFEVKPRKQVEVRPRRPHNQKYKKQLSQTFAGYKGELKDTLNESLELAVEAVLTEGLSLQKAADRFDISKTVLWRRVRNNPDYMKHNRDKPSLAEAYERLQRGESLKSISQDLQIPMSTLHRHKVRLATQGRLPEFVACRRRDNTPKDELRDKLAKAVQACLVEGMSQNHAANLFEIPKSTLWRHLQRRINDVDHKVKKEILAQEEAEEEILA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01319154;
- 90% Identity
- iTF_01319154;
- 80% Identity
- iTF_01319154;