Slat006904.1
Basic Information
- Gene Symbol
- retn_1
- Assembly
- GCA_037075145.1
- Location
- JBAMCM010000132.1:2344038-2368370[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-26 9.9e-23 80.5 0.0 2 89 305 390 304 390 0.96
Sequence Information
- Coding Sequence
- ATGCAACTGAGTGTGCATCCGACTATGGACTGCAGCGGCCGTTCAAATAACATTGAACGCGATTCCGACTTGGGAGACGATTTGTCGCACGGCGATCGCACAGATGACGAGATGCGTGACTGTGATTCCGTGGACGGCGAGCATCATCAGCTGAGCGGCAAAGCGGCCATAGCAGCCCGTTTGAACCACACAATCTCCAGTAATGGAGGCGTGGGAGGACTAGGCTTTGCCGGCGGAAGAGCTCACAGTCCAGAGCAGCAGACAGAATTGTCTTTGAGCCATCATCATCAATTGCCACCAAATCATCCATTGAATGCTTTAGGCAGTTTTATGGGCATCGGGGGACTCCACAGCATTCCAAATCTGCAGCACAGCGATGTGCTGGAAAAGCTAAAGATGCAAGTGCGCGACATGAAGGTGGGTCTGATGGAGCCGGACTATGCAGCGGCAGCCCATGCGGCGGCCTTTGGGGCCAATATGTTGCCCACCACCATTGGCTCGAGCTTTCCATTGCCGGGACCAGCCGCGTCCTTTGGTCATGGCGCACCTGGTATGGGCACACCGGCCCTGCCAGCCTCCACAAATGGCAATACAGGAGCCACCAATGGCCTCAGCTATAGCCAGGCCCCTCATGCCGGGGGTGGTGGCAATAGTGCAGGTGgcggaggaggaggtggaggaggcggaggaggtggtggtggcaatggTGTTGGGGGTGGTCCAGCCAGTGGAAATGCTCATCCATTTTCGTTTGCTTCGCCAACGGCTCCGAGTGCCAAAGAAGCTAATTCCGCATCAAATTCATCGACATCCAGTGAGGCTTCCAATTCATCGCAGCAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTTTACGAAATCAATGATGATCCCAAGCGCAAAGAGTTCCTGgatgatttattttcgtttatgCAAAAGCGCGGCACCCCCATAAATCGGCTGCCTATTATGGCCAAGTCTGTGTTGGACTTGTACGAATTATATAATCTGGTGATAGCCCGAGGCGGTCTTGTTGATGTCATCAACAAGAAATTGTGGCAGGAGATCATCAAGGGACTCCATTTGCCGTCGAGCATCACTAGTGCAGCATTCACCCTACGCACACAATACATGAAGTATCTTTACCCGTACGagtgtgaaaagaaaaatctgagCACACCAGCCGAGCTCCAGGCAGCCATTGATGGCAATCGCCGTGAAGGACGCCGTTCCAGCTACGGTCAATACGAGGCCATGCACAATCAAATGCCCCTGACCCCGATTTCGCGTCCATCATTGCCGGGAGGCATGCAGCAAATGTCACCCTTGGCCCTGGTCACCCATGCTGCTGCGGCCAATAATCaacaggcagcagcagcggccgcTGCCGCTCATCGCCGTTTGATGGGCGGTCCGGCCTTTGGCCAAATGCCCAATTTGGTCAAGCAAGAGTTTGAGAATCGTATGATTGAGTATCTGCAGCTTATTCAGGTGAaaaaggagcagcagcagcagcaacaacaacagcaacaacaccagcagcagcaacaggctGGCGCAGGCGGAGGGGTGCCCGGTTCAGGTTCTTTGCCACATCAGCAGGCCCAAGGGCAGCCGCCACACCAGCAACGTCAGCGCTCCCAAAGTCCCGAGATGAGCACACGTGATGCCCTCAGCGCCCAGATGGCCCTCTGGCATATgtatcacaacaacaatagtagTCCGCCCAATTCGGGATCCGCGCACACTTCCCCCCAATTCGGGGCCAATGCAGAGCTGCAGCGCGAAGCCTTGAACCTTTCCGACTCACCACCGAATCTCACCACCATAAAACGCGAACGTGAACGCGAGCCCACGCCAGAGCCCATCGACCAAGAGGACTCCCCGCACCAGCCACCGCCAGCCAAACGTGGAGTGACAAATCCCCTCATCCCGCCCGGCTTTCCAGCCAATTTCTATCTAAATCCACACAACATGGCcgcagtggcagcagctgccggCTTTCACCACCAGCAGGCCAACAGTCATCTTCATCAGGATGGCGTCTCCGAGGGCGAGCCAGAGGACGAGTATGGCGGTGGTGAGCACAATACCACAGGCAATTCATCGTCTCTGCACGATGACAGCGAGCCACAACAGCTAAATGGACACCACCATCATTCGCATCTGCATCACAGTCATTCGCATCACCATCATCTGGACAAGTCGGACGACTCGGCCATTGAAAATTCTCCCAGCACCTCCACTTCAGCCTCGGGCGGCAATCGCCACAGTTCGCCCGTATCCACCAAGAAAAAGAGTGCCAACAAATCGCAAACAAAAGCCCCAGAATCGCAGGCAGATACCTGTTCCGCCAGCAAACTCAGCCCACTGGAGACGCTAAGTCTACTCTCTGGCATGCAATTCCAAGTGGCACGCAATGGTACCGGAGAAAATGGCGAACAGCAATTGATGGTCAACCTCGAACTGAATGGCATTAAATACACGGGCGTGCTGGTGGCCAATGCCAAGGCGTCTCAAAGTCAGAGTGAAGGCTCCGAAGAGATCTCTGCCCCACCCTCAACCATAGAGGAGACAGCAGCGCCGGCAGAGACAGCGGCGACAACAGCTGCCACGCCACCATCTCCCCAGACAGATGAAATTCCAGCGGAGCCCGACCAGGAGGAAGACGAAGTCGAGCCGAGCAAGGCAGAAGAGGCGTCGCCCATTCCCATTGTAAATGGCGCTAGTGTGACCACTGGAGTGTCCCTGCTGAAGGATGCTGTCGTCAGTTCATAA
- Protein Sequence
- MQLSVHPTMDCSGRSNNIERDSDLGDDLSHGDRTDDEMRDCDSVDGEHHQLSGKAAIAARLNHTISSNGGVGGLGFAGGRAHSPEQQTELSLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEPDYAAAAHAAAFGANMLPTTIGSSFPLPGPAASFGHGAPGMGTPALPASTNGNTGATNGLSYSQAPHAGGGGNSAGGGGGGGGGGGGGGGNGVGGGPASGNAHPFSFASPTAPSAKEANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPSLPGGMQQMSPLALVTHAAAANNQQAAAAAAAAHRRLMGGPAFGQMPNLVKQEFENRMIEYLQLIQVKKEQQQQQQQQQQHQQQQQAGAGGGVPGSGSLPHQQAQGQPPHQQRQRSQSPEMSTRDALSAQMALWHMYHNNNSSPPNSGSAHTSPQFGANAELQREALNLSDSPPNLTTIKREREREPTPEPIDQEDSPHQPPPAKRGVTNPLIPPGFPANFYLNPHNMAAVAAAAGFHHQQANSHLHQDGVSEGEPEDEYGGGEHNTTGNSSSLHDDSEPQQLNGHHHHSHLHHSHSHHHHLDKSDDSAIENSPSTSTSASGGNRHSSPVSTKKKSANKSQTKAPESQADTCSASKLSPLETLSLLSGMQFQVARNGTGENGEQQLMVNLELNGIKYTGVLVANAKASQSQSEGSEEISAPPSTIEETAAPAETAATTAATPPSPQTDEIPAEPDQEEDEVEPSKAEEASPIPIVNGASVTTGVSLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -