Spyr022949.1
Basic Information
- Insect
- Scaeva pyrastri
- Gene Symbol
- -
- Assembly
- GCA_905146935.1
- Location
- LR989928.1:1359392-1361538[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.56 73 4.9 0.7 2 11 7 16 6 20 0.86 2 13 0.44 56 5.3 0.4 1 23 177 202 177 202 0.83 3 13 0.16 21 6.6 3.9 1 21 208 228 208 230 0.93 4 13 0.047 6.1 8.3 0.1 2 11 237 246 236 253 0.87 5 13 0.0045 0.59 11.5 6.1 2 23 296 317 295 317 0.97 6 13 0.00011 0.014 16.6 0.8 1 23 323 345 323 345 0.97 7 13 0.021 2.7 9.4 0.4 2 23 352 374 351 374 0.93 8 13 0.019 2.5 9.5 4.3 2 23 382 404 381 404 0.92 9 13 6.5e-05 0.0084 17.3 0.1 1 23 441 463 441 463 0.99 10 13 4.2e-05 0.0054 17.9 3.8 1 23 469 492 469 492 0.93 11 13 0.00013 0.016 16.4 2.9 1 23 498 521 498 521 0.95 12 13 0.00078 0.1 13.9 3.0 1 23 527 549 527 549 0.97 13 13 0.00051 0.066 14.5 0.7 1 23 555 578 555 578 0.94
Sequence Information
- Coding Sequence
- ATGAGCGTAGCAGAAAAGACTTGTAGAACCTGTGGCAAAACTTTTGACTTTGAAGATGCATCAAACCTTTGTGAGCTTTATAATGCAAAGGAATATGAAAATGAAATAAAAATGATTTTGGAAGAATTTGATATATGGAATTTAAATATATCTCAGAATGATGGCCTACCTCAAAAAATTTGCCTTACATGCTTCGATAGCTTTTGTCAAATTCACAACTTTCGTTTGATGTGTATTGAGGCACAAATGAACTTTGGAGAAATGTGTACGGGATTGGAAATAATTATTAAACAAGAATTGTGTGACGACGATGATGATTATTTGCACCAGAATTACGATGGTGAGGAGTTCATAATTGTTAAAGAGCGTTATTCATTTCCTGGTGACGAGCTTTTGAAAACATCAATATCGGATGAAGAATTAATTGTTTTCAATTCTGATAAAGTTGTTGAAAATAGTGAAAATATAGAAAATCCTTCCAAAGAAAATGAAATCGAAATAGATACAAATGAGCTCGATTTGAAACAACATCGATGCGACTATTGTATGGGATTTGTGAGTTTTGATGACCCAGATGAGCTCAATACCCACTATAATGCACTACATTCATCTAATTTACCATATCCGTGCCCTAAGTGCGATTCACGTTTTGACAAGAAATCAAAGCGAAACAGTCATGCCCGTTGCCACTTTGATGTGACTCCTCTGCAATGTAAACAATGTGGCAAGAAGTTTCGAGGAGACGAACAGATGATGGCACAACATATCGCATACTATCACGTAGATAAAAATCGAGAGTGCTCAATATGTAACTCAAAGTTTGAAAATATTTCATTGAAAAGATATTACTATCACATGAAGTGGCATAACGATTCCAAGCTCCTGAAGTGCAAGTTTTGTGACAAGAAATTCATTCAAAGTCCACACTTGCAATGCCACGAAAGGACTCATACAGGTGATACACAATACATATGTCAAGAATGTGGATTAGGGTGCAAGAACTCAATGCTTCTGAAGAAGCACATTCTTTTGCATGAAAAGAAGGAACTAGTGGAGTGCCCAAAATGTCCTAAAAGGTATTTCACTCGAGTTGGTATTAAGCTGCATAATAAGAAAGTCCATGATCCAAATAAGAAACCTGTATATTGTGAGATCTGCAATAAACATTTTGGCTATCCACATGATTTAGTTACTCACAATCACAAAAAACACGGAGCCCCTGCTCCAAAAGCTGTAAAACGGACAGCACGGCCAATAACAGCCGCATCTGCTGCACTAAAAATAATAAAAAAACACAAAAAAAGAGAATTTATAAAGCCCTATAAATGTGATAAGTGTGAAGAAGCGTATGTGCTAGAAGTACAATTAATAAGGCACATGAAAGTTCATGACGAGTACAGACCCTATCGGTGCGAATTCTGTCCGAAATGTTTCAAACGAGAAGCACACTTAAAAATGCATGTAGACAACATACATTTCAATAAAAAACCACACAAGTGTTTAATTTGTGGAGCGGCATTCGCACAAAAAAGTCATTTATTCGATCACCATGCTGTAAAGCATGAAAATAAAAGAAAACACGAATGTAAAATTTGCCAAAAGAAGTTTGGAACCTACCAGGTACTGAAGACGCATATGTTTATACATTCAAACGAAAGACCACATGTTTGCAAAGTATGCAATAAGGGCTTTAAACAAATGATAGTACTTAAGTCCCACATGGCTAATGTTCATTTTACGAAGAAGAAAAATCGGCGAACTAGAGCACAACAAATAGAAGGGAACCAATTCATAGAAGAATTTTCACAGCTAGCAAATTAA
- Protein Sequence
- MSVAEKTCRTCGKTFDFEDASNLCELYNAKEYENEIKMILEEFDIWNLNISQNDGLPQKICLTCFDSFCQIHNFRLMCIEAQMNFGEMCTGLEIIIKQELCDDDDDYLHQNYDGEEFIIVKERYSFPGDELLKTSISDEELIVFNSDKVVENSENIENPSKENEIEIDTNELDLKQHRCDYCMGFVSFDDPDELNTHYNALHSSNLPYPCPKCDSRFDKKSKRNSHARCHFDVTPLQCKQCGKKFRGDEQMMAQHIAYYHVDKNRECSICNSKFENISLKRYYYHMKWHNDSKLLKCKFCDKKFIQSPHLQCHERTHTGDTQYICQECGLGCKNSMLLKKHILLHEKKELVECPKCPKRYFTRVGIKLHNKKVHDPNKKPVYCEICNKHFGYPHDLVTHNHKKHGAPAPKAVKRTARPITAASAALKIIKKHKKREFIKPYKCDKCEEAYVLEVQLIRHMKVHDEYRPYRCEFCPKCFKREAHLKMHVDNIHFNKKPHKCLICGAAFAQKSHLFDHHAVKHENKRKHECKICQKKFGTYQVLKTHMFIHSNERPHVCKVCNKGFKQMIVLKSHMANVHFTKKKNRRTRAQQIEGNQFIEEFSQLAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -