Spyr024420.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scaeva pyrastri
Gene Symbol
-
Assembly
GCA_905146935.1
Location
LR989928.1:14221286-14225648[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.12 16 7.0 0.4 2 23 228 250 227 250 0.92
2 16 4.9 6.3e+02 2.0 0.5 6 23 259 276 259 276 0.96
3 16 0.04 5.2 8.5 1.5 1 23 282 304 282 304 0.97
4 16 0.00019 0.025 15.9 1.1 1 23 310 333 310 333 0.93
5 16 0.00014 0.018 16.3 1.6 1 23 339 362 339 362 0.93
6 16 0.00039 0.05 14.9 2.0 3 23 370 390 369 390 0.97
7 16 0.0014 0.18 13.1 3.2 1 23 398 421 398 421 0.97
8 16 0.017 2.2 9.7 0.3 1 23 428 451 428 451 0.90
9 16 0.024 3.1 9.2 0.4 1 16 457 472 457 473 0.88
10 16 1.2 1.5e+02 3.9 2.0 2 23 676 698 675 698 0.94
11 16 6.7e-06 0.00087 20.4 2.5 1 23 730 752 730 752 0.99
12 16 0.00017 0.023 16.0 4.7 1 23 759 781 759 781 0.98
13 16 0.002 0.26 12.6 3.5 3 23 790 811 788 811 0.96
14 16 0.13 17 6.9 1.7 2 23 820 842 819 842 0.95
15 16 7.6e-05 0.0099 17.1 0.3 3 23 851 872 850 872 0.96
16 16 8.1 1.1e+03 1.3 0.3 1 12 878 890 878 892 0.83

Sequence Information

Coding Sequence
ATGCATTGTATTTTGTGTTTAAAGAAACCTAATAAATCAATAGCCCTATTCGGAGAACATGGGCTTCGTCTTGACATAAAAAGTATTATAAAAAAACACTTTTGGCTTCAGCCATGTGAAGAGGATATTAACTTCAACTTAATATGTTCAACGTGTTGGAAATCATTACTAGCCTTTCACAAGTTCTATCAAGAAATCGAGAAATCCCATCGCTTGCTTAACAAGTTAAATCCTGAAAATGAACGTAACTTAGAATCCGGAGGCGATTCAAATGATTGCCTATTTGAAAAAGAAGATGACATCCTGTATCAAGGAATTAAAATTGAATTCACTGATGAATCTGGTATTAAGTCGGATCAGGTGAATGAAACTATCGCATGTCCTTTAGAATTTGATGTAAAATCAGATCAGAATGAATTTGAAGCGAACGAAACAGAACCAGAGGAATCTGATTCAGAAATTCCCCTATCAAAGTTGACCAAACAGCTGCAGCATAAGAGCGAGGAAAGTTTAGAAAGCAATTCTATTAACAAGACGGTTGATAATGTTAAAAATACGCCGGAAGAAAAGATCCACATCCACGAAGGAAAATGGCTAGCAACGTGTTTTGGCGAAGAAACTGTTACAAAACCAATAAGCCACCATGAATTGGATAAATTCATAAAATTGAATACGGCACTTACTTGCGAGATATGTCGCATTCCAATGACAGACTTCTCAAATCTCCAGACGCACTTCAAAGATAACCACACTGTTAAGCCCTTTGTGACTTGTTGTGACAAAAAATTCGAACTTCGTTGTCGTTTGGTCGATCATATTTTGTTGCACAAACTACCTAATTATTTCACATGTGTTGTCTGTTCTAAGGTCTTATCGTGTCGTCTTAATTTAAGAAAGCACATGGTCGTTCACGACAAAAAAGAAGTTTTCCAATGTGATCAATGCGAAAAGACATTCTACCGAAAAGAGGTATTTAATCGTCATGTGTTGGACATACACACTTTGGAGAGAAAGTTTAAATGTGAGGAGTGTGATAAACTCTTTGCTTCGAAATGTTCCCTAAATACGCATATCTATGGGGTTCATAAGGGCCGTTACAAAAAAATCTGCGAGCAGTGCGGCAAAGTATCTTGTGACCAAGAGACTTTCCTTCGTCACCAAATGAAACATTCAAATGAACCACAAACGTATTTTCCATGTCCACAATGCAGCGTAAAACTTTCAACCAAACACGGATTACGCCATCACATAAGATATCAGCACTCGAAAGATACTCGAGAACACGTTTGCAATGTTTGTGGAAATATATCAACAAGTGAAGCGGCATTAAAACGGCATGTAACTTTTATGCACAAGTATAAACGTGATTTCAAGTGTACTCTGTGTGAAAAGGCGTTTAAGAGAGCTCTTACTTTGAAGCCAAATGCAGAGCTTAACAATGCCAAGTCAATTTGCTGTTCGTGTTGGAAAACTTTAGAATCTTTTGATAAGTTTTATACAACAATCGTAAAAGCCCACAGTAAACTAGCAGCTTTTGTTAAGCTCCCCGATAAGGAGAGTGATCATGAATCGACTCAGTTCGATAGTTTTTCAGACTTGTTTACAACAGTTGTTAAACAAGAAAGTTCTGAAGACTCAACCAAACTTGAGACGTCAGAAATTCCAGAAGCACCCCAACCTTCTGATTACCTTACAAAACAGTGCGATGAGAAAGACGATCACAACTACGACCTCGATTTACAAGTTCCTCTCATCAAGTTAAGTACCCGCAGTAGTTCATGGAAGGAAGATGAGGATGAGGATGAGTATGAAGAGAGCAAAGACAATGCATCATACTCAGAAGACGCTTCATCGACAATAGACAACGACAAATCGCAATTAGACTGTGATTCCGACAGCGATAGTGATTACAATGCTCCTAAGAAAAAAGCGAAAGTAAAAGTTTCATCGACAACGAATGAGTTAGGATTAAGTAAAATTCCCTGTAAGGAATTCGATAGCTTTATTAAGAAAAATATGGAACTTTCGTGCAGTTTATGCAACAAACCAGTTGAGAATTTCTTGTGCCTTAAAGAGCACTTCAAAAAAATCCACAAATCAGATGCTTTTGTAACGTGTTGCGATAGACAATGGACCAGTCGTTTTTCGCTAGTGCATCATTTACTACTTCATCAAGATCCTGATTTATATAAGTGTAAGAAATGCGGACGAGTACTGGCTAACAAGAGATCTTTTAAAAATCATATGCAATCCCATGTGACCCAGGAACGCATTCATCAGTGTACGAAATGCAAGAAAAAGTTTTCTTCCATACCAAAATTGGAGAAACATTTAAAATCACACATCCGAGTGCACACTGATCAGATATGTGAACAATGTGGTAAAGTATGCCATAGTAGGCAGAGTCTAAGTGCCCATCAGAAACGAGAACATATGGGCTTTGTTAAGCAAAGGGTGCAATGTACAAAGTGCGGAGCATATCTGTCGGACTCATCAACTTTACATTTTCATATGAAGTACCAACATCCTAAAACTAAAGTAATTAATGCTTGTCACATTTGTGGGAAGATTTCGGCGACTGCATATGGACTGAAGAGGCATATACAATATATGCATACAATGGAGCGTGTCCATAAGTGTACAATCTGTGAGGACAAGGCATTCAAGACTGCGCAGATACTCAGGGTAAGGGATAATGTTTTCTTTAAATATTTGTACTCAAATGATGAAAGCACTTTAGTTGGCATACAGTGCAGTAAACTTTTCCTTAGGCAACTTTCAATTATTATTGTTTCAACTATAACTTAA
Protein Sequence
MHCILCLKKPNKSIALFGEHGLRLDIKSIIKKHFWLQPCEEDINFNLICSTCWKSLLAFHKFYQEIEKSHRLLNKLNPENERNLESGGDSNDCLFEKEDDILYQGIKIEFTDESGIKSDQVNETIACPLEFDVKSDQNEFEANETEPEESDSEIPLSKLTKQLQHKSEESLESNSINKTVDNVKNTPEEKIHIHEGKWLATCFGEETVTKPISHHELDKFIKLNTALTCEICRIPMTDFSNLQTHFKDNHTVKPFVTCCDKKFELRCRLVDHILLHKLPNYFTCVVCSKVLSCRLNLRKHMVVHDKKEVFQCDQCEKTFYRKEVFNRHVLDIHTLERKFKCEECDKLFASKCSLNTHIYGVHKGRYKKICEQCGKVSCDQETFLRHQMKHSNEPQTYFPCPQCSVKLSTKHGLRHHIRYQHSKDTREHVCNVCGNISTSEAALKRHVTFMHKYKRDFKCTLCEKAFKRALTLKPNAELNNAKSICCSCWKTLESFDKFYTTIVKAHSKLAAFVKLPDKESDHESTQFDSFSDLFTTVVKQESSEDSTKLETSEIPEAPQPSDYLTKQCDEKDDHNYDLDLQVPLIKLSTRSSSWKEDEDEDEYEESKDNASYSEDASSTIDNDKSQLDCDSDSDSDYNAPKKKAKVKVSSTTNELGLSKIPCKEFDSFIKKNMELSCSLCNKPVENFLCLKEHFKKIHKSDAFVTCCDRQWTSRFSLVHHLLLHQDPDLYKCKKCGRVLANKRSFKNHMQSHVTQERIHQCTKCKKKFSSIPKLEKHLKSHIRVHTDQICEQCGKVCHSRQSLSAHQKREHMGFVKQRVQCTKCGAYLSDSSTLHFHMKYQHPKTKVINACHICGKISATAYGLKRHIQYMHTMERVHKCTICEDKAFKTAQILRVRDNVFFKYLYSNDESTLVGIQCSKLFLRQLSIIIVSTIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-