Spyr024419.1
Basic Information
- Insect
- Scaeva pyrastri
- Gene Symbol
- -
- Assembly
- GCA_905146935.1
- Location
- LR989928.1:14216342-14220950[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0013 0.16 13.3 0.6 1 23 300 322 300 322 0.98 2 15 1.3e-05 0.0017 19.5 4.0 1 23 328 350 328 350 0.98 3 15 0.0014 0.18 13.1 1.8 1 23 356 379 356 379 0.93 4 15 0.00016 0.021 16.1 0.4 3 23 385 405 384 405 0.97 5 15 0.05 6.5 8.2 1.2 1 23 413 436 413 436 0.91 6 15 0.00066 0.086 14.1 0.3 3 23 445 466 443 466 0.94 7 15 0.007 0.9 10.9 0.3 1 16 472 487 472 488 0.87 8 15 0.45 58 5.3 0.3 2 23 682 704 681 704 0.91 9 15 0.15 19 6.8 0.2 6 23 713 730 713 730 0.98 10 15 1.1e-06 0.00015 22.9 2.5 1 23 764 786 764 786 0.99 11 15 0.00015 0.02 16.1 0.6 1 23 792 815 792 815 0.93 12 15 0.00067 0.087 14.1 0.4 3 23 823 843 822 843 0.97 13 15 9.9e-05 0.013 16.8 0.2 2 23 852 874 851 874 0.96 14 15 0.008 1 10.7 0.6 1 23 881 904 881 904 0.92 15 15 0.0074 0.95 10.9 0.1 1 17 910 926 910 927 0.89
Sequence Information
- Coding Sequence
- ATGAAGTGCATTCTTTGTTTAAAAATACCTGACAAATTAATTGATATATTCGGAGAACAGGGTCTCCATCTCGATATGAAATCCATAATTGCAAAACATTTTTGGCTCGAGCCGAAGCAAGAGGATAACAATTCCAAATTTATATGTTCGTCATGTTGGATATCAGTTGATACATTTCACAAATTCTATGAACAAATAAAAGAAGCTCATTGTACGTTCCAAGAAATAAAACCTGCAGTCACAGAAAATGATTTCCAAGATACAGGAACCATGTCCAACGATATACATTTTAGTGACAACAACATGTACTTGGACGAAGATATCAAAGTTGAAGACTACGAATCAACTAATTTCCCAACGGAGCTAGAATGTCACATAAATCCCTTAGAAATATCGGTAAAAAGTTATGAAAGAGACATTAACATTAAGTCTGACTCAGAGTCTGAAATGCCTCTATCTGAATTATCTAAACAACTTTATAAAAAAAGTAAAGTGAAAGAAAAAAGTTGCAAGGCCAACACTGAACCACCGAAAAAGATTCGACCAAAACTAAAGACTCTAAAGAAAGCAAACTCTGGATCACAGCCACGTTCTGATAGCACAGACCCAAATGAAGAAAAACTTCATATTCATGAAGGCAAATGGCTAGCCACTTGTTATGCAGAAGAGACTTATTCAAAACCAATTAGCTCAGAAGAGTTAGATAAGTACTTAAAACTGAATATAGAACTTTTGTGTGGAGTTTGCCAAATGCCAATGGACGAATTTGCATCCCTTCATCCGCATTTCGTTAAGTATCATGATAAAATCAAACCATTTGTAACTTGTTGTGGAAGAAAACTTAAATATCGTGCTCATATAATTGATCATAGCTTAGTGCATAAGATACCTGAGTATTTTAAGTGTGACAAATGCTCTAAAGTCTGGCCATCTCGTCGGAATCTAAAAGAACATTTATCAATACACAATAAGAGCTTTATTTACCACTGTGACAAATGCAATAAAAGTTTTTGTAGTAAACCTGCTCTTGAGCGCCACCAGGAAGTACACTTCGTCGAAAAACCATTCAAATGTGATATCTGTGATAAATACTACGCAACGGAATACCGACTAAAACAACACACCTACAATATGCATCAATATAAGAAAATTTGTGAACAATGTGGTCAAGTATTTAAAGAAAAGGAAACATTTGTACGGCATCTTTTGAAGCATACAAATGAACCGAAACCATTTTTTGAATGTAAAATATGTGGAGCTAGACTATCGAGTAAGAAAATACTACAGAAACATAACAAATTTCAGCATCTGGAAAATTCAATCGAACAAAATTGTAATCTGTGTGGAATCACAGTTAAAAGCTTACAAGCTCTTAAACGACACATGAATTTTGTTCATAAATATCAGCGTGAACACAAGTGTACAATGTGCGATAAGGCCTTCAAAAGGGCTCTTACACTTAAGCCAAATGAAGACGATTCAAGTTCAAATTCGATATGTTCCACTTGCTGGACGTCATTGTCATCATTTCATAAATTCTATGAAGAGATCAAAATAGCCCATTGTTCGAAAATGGAAATTAAACCAGCAAATGATGAAGATGAGGATCTCGAAGTTGAGGCCAATTCGAGTGAACATCGTTTAGAAGATGATTGTAACGGTATTCTATACCAAGCCATAAAAGTGGAATTAAAAGAGGAAACCAATAATGAACGAGCGGAGACCGATGCTTCTGCCGAAAGAATCAAAAGTCCAATAGAAGAACAACTTAAATACTGCCAAGATGAAGTGGATAAAGATGAAGATTTGGATTCTGACTCTGAAATCCCTCTCTCGAAGCTAACCAAAAAATGCCAAGAAGAAAAAGAAACTCCTGATAGTAGTTCGAGCACGATATGGGTAGGCAAAAGTGAAGACACTCAAGACCAAAAGATTCATATTGAAGATGGAAAGTGGCTAGCCACTTGTTTTGGCGAAGAAACTAGCGATAAGCCGATAAGTCACAAGGAGTTGGATAAGTTTATCAAACTTAATTTTGAACTCACATGCGAAATGTGTCGAATACCAATGAAAGACTTCTCAGCCCTCCAGAAACACTTCAAAGATGCCCATAGTACGAAGACTTTTGTGACTTGCTGTGATAGAAAGTTCTCTGTACGTAGTCGTTTAGTTGACCACATTTTGCTTCATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACACATGATTGTGCATGACAAAAAATACGACTTCCAGTGTGACAAGTGCGATAAGACTTTTTACCGAAAACAACTTTTGGACCGTCACATGGATACCCACGTATTGGATAGAAAATTTAAATGCGATATATGTGATAAACTTTTTACATCGAAATTTTCTCTCGGTCAACACATCTACGGTGTTCATAAAGGTGGTTATAAGAAAATTTGCGAGCAATGTGGCAAAGTTTCTCGTGATCATGAAGCTTTTGTCCGTCATCAGTTGATACATACAAATCAACCAAAACCATTTGTCGAATGTCCTAAATGCGGTATCAAGCTTGTCGACAAAAATGGCTTACGTAAACATATGCAATCTCAGCATCCCGATGAAACACGTGAACACATTTGCACTCAATGCGGAATTGTGACCAATACAATTTTTGCGTTGCGACGGCATATATCGTTTATGCACAAAAAAAATCGTGACCATAAGTGTCCGGTGTGTGAGAAAGCATTTAAGAGAGCTCTAACTTTAAGGCAAGAAATTAATATTATATACCGACGGTATTGTTATGAAATTTGTAAGTGCTTTTGTTATTAA
- Protein Sequence
- MKCILCLKIPDKLIDIFGEQGLHLDMKSIIAKHFWLEPKQEDNNSKFICSSCWISVDTFHKFYEQIKEAHCTFQEIKPAVTENDFQDTGTMSNDIHFSDNNMYLDEDIKVEDYESTNFPTELECHINPLEISVKSYERDINIKSDSESEMPLSELSKQLYKKSKVKEKSCKANTEPPKKIRPKLKTLKKANSGSQPRSDSTDPNEEKLHIHEGKWLATCYAEETYSKPISSEELDKYLKLNIELLCGVCQMPMDEFASLHPHFVKYHDKIKPFVTCCGRKLKYRAHIIDHSLVHKIPEYFKCDKCSKVWPSRRNLKEHLSIHNKSFIYHCDKCNKSFCSKPALERHQEVHFVEKPFKCDICDKYYATEYRLKQHTYNMHQYKKICEQCGQVFKEKETFVRHLLKHTNEPKPFFECKICGARLSSKKILQKHNKFQHLENSIEQNCNLCGITVKSLQALKRHMNFVHKYQREHKCTMCDKAFKRALTLKPNEDDSSSNSICSTCWTSLSSFHKFYEEIKIAHCSKMEIKPANDEDEDLEVEANSSEHRLEDDCNGILYQAIKVELKEETNNERAETDASAERIKSPIEEQLKYCQDEVDKDEDLDSDSEIPLSKLTKKCQEEKETPDSSSSTIWVGKSEDTQDQKIHIEDGKWLATCFGEETSDKPISHKELDKFIKLNFELTCEMCRIPMKDFSALQKHFKDAHSTKTFVTCCDRKFSVRSRLVDHILLHXXXXXXXXXXXXXXXXXXXXXXKHMIVHDKKYDFQCDKCDKTFYRKQLLDRHMDTHVLDRKFKCDICDKLFTSKFSLGQHIYGVHKGGYKKICEQCGKVSRDHEAFVRHQLIHTNQPKPFVECPKCGIKLVDKNGLRKHMQSQHPDETREHICTQCGIVTNTIFALRRHISFMHKKNRDHKCPVCEKAFKRALTLRQEINIIYRRYCYEICKCFCY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -