Spyr025098.1
Basic Information
- Insect
- Scaeva pyrastri
- Gene Symbol
- -
- Assembly
- GCA_905146935.1
- Location
- LR989928.1:21017748-21021086[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.025 3.2 9.2 0.2 2 23 178 200 177 200 0.93 2 18 1.9 2.5e+02 3.3 4.4 2 19 243 260 242 263 0.91 3 18 0.36 46 5.6 2.3 3 23 275 295 274 295 0.88 4 18 0.057 7.4 8.1 0.1 3 23 304 325 303 325 0.94 5 18 0.00021 0.028 15.7 3.0 1 23 331 353 331 353 0.98 6 18 0.12 16 7.0 6.1 1 23 359 381 359 382 0.95 7 18 6.3e-05 0.0081 17.4 1.9 2 23 389 411 389 411 0.95 8 18 0.0011 0.14 13.4 0.4 1 23 458 481 458 481 0.92 9 18 0.0029 0.37 12.2 0.4 1 23 486 508 486 508 0.99 10 18 1.2 1.6e+02 3.9 0.1 1 23 524 548 524 548 0.87 11 18 3.6e-06 0.00047 21.3 1.9 1 23 552 574 552 574 0.98 12 18 0.0022 0.28 12.5 0.9 1 23 580 603 580 603 0.96 13 18 0.026 3.4 9.1 0.1 2 23 609 631 608 631 0.95 14 18 2.1e-05 0.0028 18.9 0.3 2 23 635 657 634 657 0.96 15 18 5.9e-05 0.0077 17.4 1.1 1 23 663 686 663 686 0.96 16 18 0.00076 0.098 14.0 1.8 1 23 692 714 692 714 0.98 17 18 0.00034 0.044 15.1 4.1 1 23 720 742 720 742 0.98 18 18 0.0053 0.69 11.3 0.0 1 23 748 773 748 773 0.96
Sequence Information
- Coding Sequence
- ATGAAATTCAATTGCTTGCGATGTAGTGTTTCACTCTCAAGCGAGTTCCAATTGATTTTCGATGAAACTGGCATCGAATTGCAACTGGACAAACTTCTGGCCGAACACTTTGAGATCTCTGTTGTCAGAGATCCTGATACAACTCAAGCCCTTTGCGATGAGTGTGTTAATAAGCTTATAGAGCTCTACGATACTCAAGTATATAATGAGGAAAAACTAGAACCCATCGAGATCGAGAATGATGAAAGCAATCATACTGAAGAAAAGTCACCCTCCGTTGTCTACGCCGAAGCCCACGACGACGACAACGATGATGATATGATTATAGAAGAAATTGAAAACGATGGAGAATTTGAAGAACTTATTGAAGAATCAACTACCACTGATAACGAAGAGTTTTTTGGGTTTAAGGAAATCGAAGTGAAACAAGCAGATAACTTTGGTGATAATTTGGATATTATAAATTTTAAAGAATATCTAAGTAATGTTATTAAAAGTGACTTGGAGCGAATAGTTTTTGACCAAAATTCTGTCTGCAAACTTTGTGACGAATCCTTAAACAGTCACGATAATGTTCTTGCACATATTTTGGACAATCATCAATCTGAAACTGAACAATATCCATGCATTTTTTGTATGGAAGAAAAACATTTTGATTCAATCAACGATCTGGCTTATCATATTGTCTTAAAGCACTATGACTTAAATTCTATTGCCATTTATTGTATTTGTCCGGAGTGCAATTCAAGATTTTCATCGTTTTTAGAATTCAATAAACATTCTTGTTATAAAAAGAATATCGGCAGTCGTTTGCAACAAGATTGCACTGAATGTTCGAAAACGTTTATTTCAAATAAAAGGTACCGTTTTCATTTACAATTTCACCTGAAGAAACAAAGACCAAAAGCTTGTTTTATCTGTGATATTTTATTTTCTGATGAAAATGATTTTTTTGAACATATTATGTTTTCTCATGAAAAAGATGACCCATTCGTGTGTAAAAAATGTGATCGAGTATGCACAACAAAACAGCTTTACGAGGATCATATAAAACTACACGATGCTGTTAGATCATTTCACTGTCCGCACTGTTCAAAGTCTTATTTGTATAATCAAATGCTAGTAAATCATATTCAACAACATCACTCAAACGACCTTTCGAATGAGTGTAAAATCTGCAAGAAATCTCTTGCCAATAGACATCTTCTAACACGACACATGCAGTTGGTACATCAGAAAGAAACCGAAAGTGATGTCTTTGTATGTTTAGCATGCGGCCTTATTGGAATCTCTGAAGATGATACAATGTTCCACAAAGACGATGATAAATGTCCAGGGGCGGAAATTAGTATCGAGTGTTTGAAAATTGCTTATGCTTGTGAGTTCTGTGAGCTTGCTTTCAAAAGTGTCGATAATTTGAAACAACATAGAACGGCCACGCATGAGGATAACATTTTCAAGTGCTGGATTTGTGAGGGTGCATATTCGGAGTACAAAAAGCTGAAAACCCACATTCTCACGCACACTTATCTTGAACCAATACAAAAATCGTTTCCAATCAACAGGCATTATGTGTGCAATATTGGTCCATGCAATCAAACCTATCTTACATGGCCATCTTTAAGAGCTCATAAGTCACGTCATGCAACCAAATTTACTTGTGAAATTTGCACTCAAACATTCACCACCGAGTCAAAGCTCAATACACATCTAAAGTCTCATGATACTAATGAGGAATATCCTTGTCAATTTTGTTCAAAAATGTGTGTTTCGCAAATGTCGCTTGCTGTGCATATCGCACGAAAACACAATAACAACTCCAAAACATGTCCAACTTGTAATTCATCTTTAAACTCGGAGGAAGCCTTAAAAGAGCATATCGAAAGTATACACACGGAGATGACATGTGACCAATGTGGCAAGATAACGAAGAACAAACGTAATCTAGCAGTTCATATTCAAATGATTCATGGCCAAGTAAAGAGATTCTTTTGTTCTGTATGCAATAAGGGTTACTTTAATAAAAGCGATTTGAAAATTCACGAAAAAACTGCCCACGAAGAATCCAACAAGTTCAAATGTCAATATTGCAACTTTAGCTCAAGCTATGAGGCTTCGTTTAAAGCTCACATACTTAAGCATAACCAAAATAAACCCTTTAAATGCGAAGAATGTTCAAGAGAGTTCACTCGAAAAGCCTGTTATAGATTACATTTACTTAGACATTCTGATGACAAACCATATGTGTGTCCAGTTGAGCTATGTGGACGAAGTTTTGTAATGCCAGGGATTTTAAATTCGCATATTAAAAATTCTCATCCCGAATGTAAGGAAAGCAAAGTGAAAAGAACTGCAACACGTCCAGCTAAAAGGAAAAGAATCAATGAAAAACCTATAAATGAAGACTTGGAATCCGCCAACTCGTCTGATTACTTTAAGACGGAGGTTTATTCTGAAAGTGAATATTTAGATGAAGAAGGTGGAATTGTTATATTTGATGGAACTGAAGCTGAAGAAGAAATTATTTTGACCGAAGAAAATATGTATATAGATTAA
- Protein Sequence
- MKFNCLRCSVSLSSEFQLIFDETGIELQLDKLLAEHFEISVVRDPDTTQALCDECVNKLIELYDTQVYNEEKLEPIEIENDESNHTEEKSPSVVYAEAHDDDNDDDMIIEEIENDGEFEELIEESTTTDNEEFFGFKEIEVKQADNFGDNLDIINFKEYLSNVIKSDLERIVFDQNSVCKLCDESLNSHDNVLAHILDNHQSETEQYPCIFCMEEKHFDSINDLAYHIVLKHYDLNSIAIYCICPECNSRFSSFLEFNKHSCYKKNIGSRLQQDCTECSKTFISNKRYRFHLQFHLKKQRPKACFICDILFSDENDFFEHIMFSHEKDDPFVCKKCDRVCTTKQLYEDHIKLHDAVRSFHCPHCSKSYLYNQMLVNHIQQHHSNDLSNECKICKKSLANRHLLTRHMQLVHQKETESDVFVCLACGLIGISEDDTMFHKDDDKCPGAEISIECLKIAYACEFCELAFKSVDNLKQHRTATHEDNIFKCWICEGAYSEYKKLKTHILTHTYLEPIQKSFPINRHYVCNIGPCNQTYLTWPSLRAHKSRHATKFTCEICTQTFTTESKLNTHLKSHDTNEEYPCQFCSKMCVSQMSLAVHIARKHNNNSKTCPTCNSSLNSEEALKEHIESIHTEMTCDQCGKITKNKRNLAVHIQMIHGQVKRFFCSVCNKGYFNKSDLKIHEKTAHEESNKFKCQYCNFSSSYEASFKAHILKHNQNKPFKCEECSREFTRKACYRLHLLRHSDDKPYVCPVELCGRSFVMPGILNSHIKNSHPECKESKVKRTATRPAKRKRINEKPINEDLESANSSDYFKTEVYSESEYLDEEGGIVIFDGTEAEEEIILTEENMYID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00694025;
- 90% Identity
- -
- 80% Identity
- -