Spav011945.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- -
- Assembly
- GCA_947532125.1
- Location
- OX383923.1:4603670-4621958[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.013 0.71 10.7 3.4 1 21 285 305 285 306 0.94 2 13 0.0004 0.022 15.5 0.3 3 23 319 340 318 340 0.97 3 13 0.2 11 7.0 0.1 1 15 377 391 377 397 0.82 4 13 7.4 4.1e+02 2.1 0.6 1 10 433 442 433 445 0.96 5 13 0.93 51 4.9 0.4 1 14 626 639 626 646 0.75 6 13 2.6 1.4e+02 3.5 2.2 1 23 668 691 668 691 0.90 7 13 0.019 1 10.2 0.8 2 23 812 833 812 833 0.95 8 13 0.00045 0.025 15.3 0.9 2 23 849 870 848 870 0.97 9 13 6.9e-06 0.00038 21.0 4.5 1 23 876 898 876 898 0.98 10 13 0.011 0.58 11.0 0.1 2 23 904 925 903 925 0.96 11 13 0.0076 0.42 11.4 0.8 2 23 932 954 931 954 0.96 12 13 7 3.8e+02 2.1 0.1 1 20 961 980 961 980 0.80 13 13 6.6e-05 0.0036 17.9 0.5 3 23 993 1014 992 1014 0.97
Sequence Information
- Coding Sequence
- ATGGCGGAGCGTAGTAAATTGCAAACTACCCAAAGCAAATTACCAACAAGAGATGGTTTGGATTCGGAGGATAAAAATATTTACGATTTGCAGAACGACATTGATATGCAGATTAACAATATTAAAATTGAAGTTCTGGACAATGAATATCTAGATGAAGAAGAACTGACTGTCAAATCACCATTACAATTCTCCATCAAAGTGGAAGTCGAGGAATACAATGAAAAATCTTATAATATTAATTTGGAAGATGATAACACTACAATGTTTTTCCCAGTGAAGGAGCTGAGTGTTCCTTGTGAAGACCAGTCTTCTCCAGCTGACTACGTACTAGAGAGATTAAGTGTGACTAATTCAGAAATTAATAGTAAATCCAAATCTAAAAATACATTATACTTATATGAAGGGAACGAAACAGATGTTTGTTTAGAAGCTGATCATATAGCAAGAACGTCAAGAAACATTATAGATAAAATCCTTGCTATAGAAGTGAGAAATTTATGCGGAGTCCTTGCAAAACCGAAGCAGGAATTCACTCTGTTACATTCACAAATATATTCCATATACAAAAAATGGAAAAATTGGTGTAGCACAACGAAAACGTACGAACAACCATTATTTTATAAATGTTACAAATGTGAAAAATCTTGGTGGTACTTAGGACCGTTTGTGGAACACGCGAAAGAACATGTTTCAGAAGTATATACAATATATCTGGAAACAACCAAAACATTTTTGTGTAACATAGTATTGGCTAGTAATGACTCTGAATCAGAAAGGTTCATATACACTGAAGGGGACTGTTGGAGGTGTAATAAACCTTATATGTTCCATGAGAAGACTAATCTATGCTACAAATGTAAGGGTTGTCAGAAATATTTTTTCAAATGTAGCACGTTACAGGATCATGAAAATATTTGCTCAGAGATTACACACAGTAAAAGTAGCGTTGCTTGTGAGATTTGCAAAAATGTATTTGAGTCTTATAGCGATTTGGAAAGACATCGTCTTACAAGTCACATTGTTAGATCAGACTTGTTCATATGGACTACATATAAGAATTGCTTAATCTGTACCAGGAAACATTATATCAATGACAGCGAGGTATGTTCAAAGAAATGTTACAAGTATGTGTGTGAATTGTGCTCCAGGAGATTTACCAGCCAACTCTTAGTTGACAGTCATAAATTATGCTCACAAAGTAATGTAGAATGTACAGTGTGCAACACTATTCTACCGAAACATTGCATGAAGATAAAACACTATACTAGCCATACCAACAAGTTTAAATTGGTTTACAAATGTTCTTTGTGTACGTACGTGTTCTTGTTTTGGGAGCAGAACTCCATGTTAAATCATCAATGTCTATGGCATAAGAGTAAGGATAAACAAGACAGTTATTTTGAATTGGTTTTAATACCAACGAAATGCATGAAAAAACTGAAGATGGTTGATCCTGAGCCTATTGCGTTTTTTGCGACAGGGTATGATGATGCTGCAGACAAGGTAACGACAGTGAACATGTACGAAGATGAACCTGTCAGTGTGTATGAAATAAAACAAGAAGTTGTTGATAATGAGGAAAGTGATGAAGACGTCGATGAATATATCATCGAGGAATGTAACTCCACGTATGATGATATGATGGCAAATATTTTCCAGGTGTCAGGAACAAGCAATAATCAAATAGAAACTCAAATCAAAACTGAGGTTACGGACTCGAGCGATGTAGACCTTGCAAACATTTCGAGGGTCACCGACGACGGTGAAGAACCACGGTTGGTGATCGATATTAGGGAGCAGGAGGAAGGCAAGATCGATATGAAGGAGAGAAAGAAGAGGAAGAAAGGTTTCAGAAAACGTGCTCCCAAGATTTACACGTGCAACATATGTGGTTACAAGGCCATACACAAGGATTATAGGGAGCATATACAGACTGAATGCTTAACGATTCGTAAAACGAAAATATATCTCGAGAGGGCATCAAAATTACATAGACCACATAAGTGCAGATGGTGTAAGGTCTCCTTCATATCACTGAACGGATACCTCTATCACTTCGCGAAAACTCACGGGTACAAGGAATTCACCTGCCCGGTCTGTCTTCTCGATTTCAATGTTGTGCAGAGGAACAAGATGGCGCCTCATTTCATATTGCATGTCAAGCAGATGTTTTTGAAAGTAAAGGTTATAAATAGAGAGAATGCCGCAACTGTTGCATCGGACATGCGTTACGAATGCAAAGTGTGCAGAGAAGTCGTGGAGAACCCCGACTTCTTTCCTCATTGGGAGAGTCATTTTAAAGTTAAGCATGTGGACAATGAGAAGATAGTTCATTATGGGGATAATATTCCAAATGTGACGCCGTCGAATGTTGATATTGAAGATTTGATAAAGAAACTGCTGATAATACGTCCGAACTACACGCACCGCACGTGTACTATATGCGACAGACGTTTCAACAGGATCAATGACAGCAAACGGCATATCATAGAGCACCTTCTGAACGACGCTTACAAGAAAAAAATCCACTACAGGTGTTTGAGATGCCAGATATGCAAAGAGAGGTTCATGAAACCGGATGCTTACAAGAAACATCTCCGGGAGCACGCCTCCCTGCCGATATACAAGTGCGGTTTGTGCAACAAGTGCTTCAGCGACTCGAGTAATTTTGTGAAACATAAAAAAATTCACAATATCAAAGTTCTAGTCTGCGATATATGCAATAACAAATACCAGGCCAAAGCGTCCCTAGAGAAACATATGGAGGTACACAACGCGACGAAACCGATAACTTGCAAGTTATGTTCGAAGATATTCTACATCGAGTCCGCTTACAAGAAACACAACCGGACCGTTCACGAGAGGAACCGAGCTAAGTTCAGTTGCTTGACGTGCGACATCAAGTTCAACGCGCTGAGGGACAAGTGGGACCACATGTGGCTCGTCCACAACGAGCGCAAGTACAACGCGGACTGTCCGGTCTGCGGGAAGAGTTTCAGGAAGTTCCAGGACGTCCGGACCCACGTACGGACGGAACACGTCTCGGTCGACGTTAAGCAGATGAGGCTGTCCGACCTGCGCAGAGGGGATCTCCAGAAGTATTTAAAAGACAGCTGCAGCCTGAAGCTCGGTGCTAAGGAGACTCTGATAGTTTATGATTGA
- Protein Sequence
- MAERSKLQTTQSKLPTRDGLDSEDKNIYDLQNDIDMQINNIKIEVLDNEYLDEEELTVKSPLQFSIKVEVEEYNEKSYNINLEDDNTTMFFPVKELSVPCEDQSSPADYVLERLSVTNSEINSKSKSKNTLYLYEGNETDVCLEADHIARTSRNIIDKILAIEVRNLCGVLAKPKQEFTLLHSQIYSIYKKWKNWCSTTKTYEQPLFYKCYKCEKSWWYLGPFVEHAKEHVSEVYTIYLETTKTFLCNIVLASNDSESERFIYTEGDCWRCNKPYMFHEKTNLCYKCKGCQKYFFKCSTLQDHENICSEITHSKSSVACEICKNVFESYSDLERHRLTSHIVRSDLFIWTTYKNCLICTRKHYINDSEVCSKKCYKYVCELCSRRFTSQLLVDSHKLCSQSNVECTVCNTILPKHCMKIKHYTSHTNKFKLVYKCSLCTYVFLFWEQNSMLNHQCLWHKSKDKQDSYFELVLIPTKCMKKLKMVDPEPIAFFATGYDDAADKVTTVNMYEDEPVSVYEIKQEVVDNEESDEDVDEYIIEECNSTYDDMMANIFQVSGTSNNQIETQIKTEVTDSSDVDLANISRVTDDGEEPRLVIDIREQEEGKIDMKERKKRKKGFRKRAPKIYTCNICGYKAIHKDYREHIQTECLTIRKTKIYLERASKLHRPHKCRWCKVSFISLNGYLYHFAKTHGYKEFTCPVCLLDFNVVQRNKMAPHFILHVKQMFLKVKVINRENAATVASDMRYECKVCREVVENPDFFPHWESHFKVKHVDNEKIVHYGDNIPNVTPSNVDIEDLIKKLLIIRPNYTHRTCTICDRRFNRINDSKRHIIEHLLNDAYKKKIHYRCLRCQICKERFMKPDAYKKHLREHASLPIYKCGLCNKCFSDSSNFVKHKKIHNIKVLVCDICNNKYQAKASLEKHMEVHNATKPITCKLCSKIFYIESAYKKHNRTVHERNRAKFSCLTCDIKFNALRDKWDHMWLVHNERKYNADCPVCGKSFRKFQDVRTHVRTEHVSVDVKQMRLSDLRRGDLQKYLKDSCSLKLGAKETLIVYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -