Spav010835.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- -
- Assembly
- GCA_947532125.1
- Location
- OX383920.1:9560658-9571909[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 9.7 5.3e+02 1.7 0.5 2 23 41 63 40 63 0.90 2 27 1.5 84 4.2 0.7 3 23 134 154 133 154 0.97 3 27 0.076 4.2 8.3 5.3 2 21 159 178 158 183 0.92 4 27 0.031 1.7 9.5 0.7 2 19 189 206 189 209 0.93 5 27 1.5 80 4.3 0.1 1 23 216 239 216 239 0.89 6 27 0.029 1.6 9.6 0.1 2 23 318 340 317 340 0.90 7 27 0.97 54 4.8 1.5 3 23 364 384 363 384 0.96 8 27 1.6e-06 8.7e-05 23.0 1.7 1 23 388 411 388 411 0.96 9 27 0.23 13 6.8 0.4 3 20 418 435 416 437 0.89 10 27 9.8 5.4e+02 1.7 0.5 1 13 474 486 474 488 0.84 11 27 2.4 1.3e+02 3.6 0.5 2 23 567 589 566 589 0.92 12 27 0.35 19 6.2 2.1 2 23 616 637 615 637 0.95 13 27 0.29 16 6.5 2.0 1 21 641 661 641 664 0.95 14 27 0.84 46 5.0 1.4 1 21 668 688 668 689 0.93 15 27 3.4 1.9e+02 3.1 1.1 1 23 696 719 693 719 0.86 16 27 0.0071 0.39 11.6 1.4 1 23 726 749 726 749 0.96 17 27 4 2.2e+02 2.9 2.2 1 23 754 776 754 776 0.93 18 27 0.03 1.6 9.6 0.4 3 23 830 851 829 851 0.96 19 27 0.03 1.6 9.6 0.1 3 23 923 943 921 943 0.95 20 27 0.0028 0.15 12.8 1.2 1 21 947 967 947 968 0.96 21 27 0.27 15 6.6 0.2 1 23 1009 1032 1009 1032 0.96 22 27 0.0052 0.28 12.0 0.8 2 23 1104 1125 1103 1125 0.95 23 27 0.00028 0.015 16.0 0.0 1 23 1129 1152 1129 1152 0.97 24 27 0.04 2.2 9.2 0.5 1 23 1156 1179 1156 1179 0.98 25 27 5.9 3.2e+02 2.4 0.4 1 23 1184 1209 1184 1209 0.87 26 27 0.00088 0.049 14.4 3.7 1 23 1218 1241 1218 1241 0.97 27 27 0.00021 0.011 16.4 0.5 1 23 1251 1274 1251 1274 0.97
Sequence Information
- Coding Sequence
- ATGACCAAGAACATTTCTTTTGTTCTAGAGCAAAATCCGATGTACGTCGCGAAACAGAACGCCAAGATCTTAGTTCAGTACACAACAGCGTATCCGTTTAGGCTCCCAGAAAGCACTATGGTTTGCGTTTATTGCTGTGAGAATTACCCGGACCCTAATGTATTCAGAAAGCACATGGAAGACTCTCATAAAGACTTCAAAGTGGCTTTGGCTTTTGCACATATCCATGAAGGTTACATCAAAGTTGACTGCACAGACCTACGATGCAGAATATGTGATGATCAGTTAGATAAAATACAAGCAGCCGCGATGCATTTGAAAACAGTACACAACAAAAACGTTGACTTTGACTATGACATTGGTTTACAGCCGTTTAAAGTCAAAACCGATATGCTTTTGTGTGGAGTTTGCGAGTATAAAGCGCCCAATATATGCACACTTAGCAGGCACATACAGAAGCATTTTTTGCAATGTACTTGCGAGTCCTGCGGTAAATCTTATGCGACGGCGACATCTCTGTCGTATCATATTAAGTACGGTTGCTGTCATGCAACCAAACAACGTCGATGTAGGAAGTGTAAAAAAAACTTCGATACTCCAGAACAGATGAGAGTCCATTTTGAGAGTTCGAAAATTTGTTGCCTATACATTTGCAGTGTGTGCGGTGACCGTTTCGAAAATTGGAAAATTAAACAAGATCATATGGAAGTAGCTCACGACTGTTCACCGCAATCCATCGCGAGGCGCAATGCGTCGATCTTAGTGCAACACACGACAGCGTATCCGTTCAGACTGCCCGAAGCCACTATCATGTGCGTCTTCTGCTGTGATGACTTCCAACAGGCAGCTCGGTTTAGGGAACATATGGAAAACGAACATCAGAGTTTGAAAGTAGAAATTGCATTTGCCCATTGCCATGAAGGGTATATTAAGGCAGACTGCACTGACCTTCGTTGTAAACTTTGCAATCAGAAATTTCCAGACTTACGCTCTGTTGCAAAACATATAGTTGAAGCGCATGGCGTTATATTCAATTTTGAGTCAGATTTAGGTATTCATCCATTTAAATTCGATAACGAGAAACTATTATGCGGGAACTGTGATAGAAATTTTCCGTGTTTGCGTCAGCTGAGTAAGCACATTGGCTCACATTACAAAAACTTCACGTGCGAAGGTTGTGGAAAATCTTACACGACGAAGAATTCTCTCCAACAGCATTTAAGATTTTCTCATAAGACAGATGAGCAGATTTGCAGGAAATGTAGAAAGACTTTCAGTTCACTGGAGGCGAAAAAAGTACATGTAACCTCGTCGCAAAAATGCTGGAAGTATCAGTGTCATTCATGCTCGCAGAGGTTCATGGCGTGGAAATGTAAACAGGATCATTTAGTGGAAGTACACGGGCAGAATAAGAAGAAGTACTCGTGTCCCGAGTGCGTTGAGGAATTTCATTCTAGAAAAACGGAACCGCATATAAAGGCGAAAAGGAATGCTGAGGTTGTATTGAAATTCTCGACCGCTTATCCATTCAGAGTGAAGACGAAGACCTTGATATGCGTTTACTGCTGCGACGAGTTTGAAGACCCTCAAGATTTTAGACGGCACGTTGACGAAAACCATGAAACTTGCACAATATCAACTGCGTTCGCCCATGTTGGCACACGAAAGGAGTACTTGAAGGTTGACTGTACCAATCTGAGGTGCCGGTTATGCTCTGAACCTACAAAATCCATCGAAGACATGGCCAGGCATATCCACGATTCGCACAAATGTAAATTAACGGCACATTTGAACCTCGATTACGATATAGGCATGCAACCATATAAGCTGGATAAGGATAAATGGTACTGTTTCATTTGCGACATGAAACTGCCCTCGTTAAATAAATTGTGTCGCCATACAACCAGTCATTATCTAGACTATACTTGTGATACATGTGGTAGGCGATATTTAACAATTGAGGCGTTGAAATACCATATCAGGTGCAGGCATACCGGTCAGTTTATGTGTAGGAAGTGCTGGACTGATTTCCCATCGTCAACTCACAAGAGGGATCACGTCAAAAGCTCTAAATCTTGTTGGCCATTCGCGTGTATCTATTGCGGTGAACGGTTTCTATCGTGGGAGCATAAGCAGAAACATTTGGTGTTGATGCACGGATGTCCGGAGACAACGTACACGTGTCCCGATTGCGCTCAAGTGTTCCAATCGCGGAAACTGTTCTACAACCACTATAAGCTTTCGCATACGGATGACAACTTCATATGCAGCTGCTGCGGACTCAAGTTTGAGTCTAAGAAACGGATGGAAGATCATAGATTGGgtcatacggGGTCTACACTGCGAATACGCGGACGTAGAGACAGTGAGACTGAAACAAAAAAGAAAATAGTTCTTGTCTATCAGTCGCCTCAGCGGCGTAATGCCGAACTAATATTAAAGTTCTCCACGGCTTTCCCTTTTAAAACACGTTTTAGTCAAATCCTCTGTGCGTATTGTCACGGGGAATTCAACTCTTTGGCCGATTTAAGGTATCATATGAAAGGCGAGCATCTTAATTCGGATTTTGGTAACGTCTTCTATAGAATCAAAGACAATTTAATTAAAATCGATATAACTGGTTTGAAATGTAAGATATGCTTGGCTGACATACAAGATGTAGATTTGTTGATGAATCATTTATTTCGAGAACACGACAAGCCAGTTAAGTTTAATGCTAGATATGGCGTCTTACCTTATAAGCAGAATGTAGACGGTAAATGGATCTGCGTGTATTGTCCTAAAATCTTTACAGAATTTATACCTTTCAAGCGACACATAGGTACGCATTTCATGAATTTTAGTTGCGAAAAATGCGGAACTATGTTTGTGTCGGATCACGCACTCAGAGACCACCATCGTCAAGTAAAATGCTTTAGAACCGCCTATAAACCACGCAACGGGAAGGTTATGAAGCCACGGACCAATGCTGAGATTATTTTGCAATGCTCTACCGCGTGTCCATTTAGAACTTGGAAGACAAATTTTAACTGTGTTTTCTGCCGGCTTCAGACCAGCGATCCTATCTCTTTGAGAGGCCATATGGCGACACGCCATGCAAATTACGATATCCAAGGAGCTTTTTACAAGAAACTCGGCAAGGATTTTCTGAACGTTGACATAACAGATTTGCAATGTAAATTATGCTTCATGCCTATAGAACAGTTTGATATTTTGACTTATCATTTGAAGAATGATCACCAACAGGCAATCAATTTAGATGCTCAAATAGGTGTCTTACCGTTTAGGTTAAACGATGGTTCGGTTTGGAAATGTACGATCTGTCCAAATGAGTTTAAAGATTTCATGTCTTTGAAAAAGCATACGTCGGAACATTTTCAAAATTACGTCTGCGATACTTGCGGAGAGGGATTTATAACTGAATCGTCTATGATAGCTCACACAAAAATACCTCATGAGAATAAGTACAGTTGCAGTCGCTGTGTGGCTACTTTTTCTTCGTTAGACGAGAGGAATATACATGTAAAAACTCAGCATACATCGATGCCCTATATGTGTATGTATTGTAAAGAAAAACCACGTTTTGCGAACTGGGAACTACGCAAGAAGCATCTCATGGAAATACACAATTACAAAACCGGGACGGATAAATACGAGTGTACGACTTGTCAAAAGTCATTTAAGACACGATCCGGGAAGTATAATCACATGACGAGAACGCATAGGATGAAAAAAGATACTGAACTTAATTACCCCTGTCCTAGTTGTCCTAAAGCGTTTACCACGAAGTTGTTCCTGGACAAACATATGGCTAAAAAACATTTCGATGTCTGA
- Protein Sequence
- MTKNISFVLEQNPMYVAKQNAKILVQYTTAYPFRLPESTMVCVYCCENYPDPNVFRKHMEDSHKDFKVALAFAHIHEGYIKVDCTDLRCRICDDQLDKIQAAAMHLKTVHNKNVDFDYDIGLQPFKVKTDMLLCGVCEYKAPNICTLSRHIQKHFLQCTCESCGKSYATATSLSYHIKYGCCHATKQRRCRKCKKNFDTPEQMRVHFESSKICCLYICSVCGDRFENWKIKQDHMEVAHDCSPQSIARRNASILVQHTTAYPFRLPEATIMCVFCCDDFQQAARFREHMENEHQSLKVEIAFAHCHEGYIKADCTDLRCKLCNQKFPDLRSVAKHIVEAHGVIFNFESDLGIHPFKFDNEKLLCGNCDRNFPCLRQLSKHIGSHYKNFTCEGCGKSYTTKNSLQQHLRFSHKTDEQICRKCRKTFSSLEAKKVHVTSSQKCWKYQCHSCSQRFMAWKCKQDHLVEVHGQNKKKYSCPECVEEFHSRKTEPHIKAKRNAEVVLKFSTAYPFRVKTKTLICVYCCDEFEDPQDFRRHVDENHETCTISTAFAHVGTRKEYLKVDCTNLRCRLCSEPTKSIEDMARHIHDSHKCKLTAHLNLDYDIGMQPYKLDKDKWYCFICDMKLPSLNKLCRHTTSHYLDYTCDTCGRRYLTIEALKYHIRCRHTGQFMCRKCWTDFPSSTHKRDHVKSSKSCWPFACIYCGERFLSWEHKQKHLVLMHGCPETTYTCPDCAQVFQSRKLFYNHYKLSHTDDNFICSCCGLKFESKKRMEDHRLGHTGSTLRIRGRRDSETETKKKIVLVYQSPQRRNAELILKFSTAFPFKTRFSQILCAYCHGEFNSLADLRYHMKGEHLNSDFGNVFYRIKDNLIKIDITGLKCKICLADIQDVDLLMNHLFREHDKPVKFNARYGVLPYKQNVDGKWICVYCPKIFTEFIPFKRHIGTHFMNFSCEKCGTMFVSDHALRDHHRQVKCFRTAYKPRNGKVMKPRTNAEIILQCSTACPFRTWKTNFNCVFCRLQTSDPISLRGHMATRHANYDIQGAFYKKLGKDFLNVDITDLQCKLCFMPIEQFDILTYHLKNDHQQAINLDAQIGVLPFRLNDGSVWKCTICPNEFKDFMSLKKHTSEHFQNYVCDTCGEGFITESSMIAHTKIPHENKYSCSRCVATFSSLDERNIHVKTQHTSMPYMCMYCKEKPRFANWELRKKHLMEIHNYKTGTDKYECTTCQKSFKTRSGKYNHMTRTHRMKKDTELNYPCPSCPKAFTTKLFLDKHMAKKHFDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -