Spav019866.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- -
- Assembly
- GCA_947532125.1
- Location
- OX383895.1:20999483-21004038[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0098 0.54 11.1 1.4 1 23 243 266 243 266 0.94 2 17 3.4e-05 0.0018 18.9 3.2 1 23 271 293 271 293 0.98 3 17 2.3 1.3e+02 3.6 0.3 2 23 297 318 296 318 0.90 4 17 0.35 19 6.2 0.1 1 23 323 346 323 346 0.93 5 17 0.9 49 4.9 0.8 5 23 410 429 407 429 0.92 6 17 8.7e-05 0.0048 17.6 1.3 1 23 435 458 435 458 0.95 7 17 0.006 0.33 11.8 0.8 3 21 463 481 462 482 0.94 8 17 0.22 12 6.9 1.5 1 22 490 511 490 513 0.89 9 17 0.14 7.6 7.5 0.7 1 23 518 541 518 541 0.93 10 17 0.016 0.85 10.5 0.2 2 23 554 575 553 575 0.92 11 17 0.002 0.11 13.3 2.4 1 23 581 603 581 603 0.98 12 17 0.00017 0.0094 16.6 1.6 1 23 638 660 638 660 0.97 13 17 0.0049 0.27 12.0 0.3 3 23 665 684 664 684 0.97 14 17 0.01 0.57 11.0 2.2 2 23 702 724 701 724 0.96 15 17 0.00013 0.007 17.1 3.4 1 23 730 752 730 752 0.98 16 17 4.5e-05 0.0025 18.5 4.8 2 23 759 780 758 780 0.96 17 17 0.0017 0.094 13.5 0.8 1 23 786 809 786 809 0.95
Sequence Information
- Coding Sequence
- ATGGAAGACGATCTAGAGAATGAGATATCAAAAACCAAAAATATTGAATGGCTAAAAAATAAACTAACGGCTGTATGGAATTCGTCAAAGTTTTGCGGAATGTGTTTGAATAACTCTGGAAATTTAAATTCCGTTAACATGGAGTTTGTGGTGGGTAGTCAGAAAGACTCAAAGTCGCTGATAGACGTTATGAATTATGTATTTAAAGACGATATTGAAAACATAATGTCGAGTACTTACGTGTGTGACTTTTGTACAGAAAAAACGCTACAGTCCTATCTGTTCATTCATAACACGAAACAATTATCTAAAATCATCAGCAACTGCGTCATGGACATTTATAGCAAAGTCGTAGACGTTCGAGATCAAGTCTTAGAATCATTTGACTGGGAAAATGCGAATATCATGATCGTTTTGGAAAATGATACAGAATTATACGAGGAAATAGATGATATTGCAAACGTTACCGAAATTGTTCCAAGAGATAAACCTATTGTTAAAAAACGTGTAACGCCGAAAATAGAAAAGTCTGTAAAAGTAAATGAAGATATACACAATCACGTAAAAACAAGACCTCTTGAGAGAAAAGATGTTGTAAAAACAGCTGATCAACCTAAATTGGCAAATAGAGATAGAACTCCAAATATAAGCTTTGAGAAAGGAAAAATTGTTGTAAAGCCTATGAAAACAATAACAAGCTTACCATCCGTACCAAGTTACACTACGTACAAATGCAAAAACTGCCCGGATATATTCACAACATACAGGTCATTGAAGGAACATGAAAAAGCCAAACACAAATCACAAATATACCAATGCAAATTATGCGATAAATCGTATAATACACAACAATACCTTAACCTTCATTATAAAAACCATTCAAAGTCACGTTGCAAAATCTGTCAGATAATATTAAGCGAAAAAGACCTTTTTATTCATTTAAAAGAGACTCATCCCCATTTAGTATATCCCTGTCAATTCTGTGAACTCGTATACTATACCGAAGAAGCTTTGGGCACACATTTCAAAGCGGATCACTTAATTAATAACACAGCATCCCAATCGCAATGCATCATGTGTTTAAAGGAAATGAGCAAAATGGATTTAAAAGCTCATAAATGTAAATTTAGCTGTTCAGATTGTTTTGTTATGCCGTGTATCCATTACAGCTACTTAATCGCTTACAGGGAGCAAATTTTGAAGCATGCCACTAAAGTAAACTGTATTGATTGTGACTATATCACTCACAGGAAGGAATATCTCGTGACTCATGTCAACAGAGAGCATTTAGATTATCATCCATTTACATGCAATGATTGCGGTATGCAGTTTTACACAAAATTGAGCTTGAAGAACCATATAGAACAATATCACATTGATAACATATGTACATATTGCGATAATACGTTTAAAAATCGAAACCTTTTATATGAACATAGGAAATCTTGCAAATTAACTATTAGAGCATTTAATTGTAATAAATGTTTAGCATCGTTTGATAAAGAGGAAGACTTTACCAAACATGAATTCTTAAGGCACAGCAACGGAGGATTCGTCTGTAAATTATGCAACAGAAGATTTCTAGAAGAAATACATTTGGAAGAGCATCGAGTTACCGCACACAGCAGTATACAATTTAAAAAGAGACGTAAAAATATTGAATGCTCCCTGTGTGATATAAAGTTTAATAACGTCAAAGAGTTAGTGAAACATGAAGAGTTTCATGGACCTAATTCAATATACCCTTGTAGAAAATGCGATAAACAATTTTACAGTTTGAAGAAGTTATACATGCATCAAGCGAGACATTATGATAGAATCGCTTGTAGCGGTTGTAAGAAGAGAATTATCTCAGTTTTCTACCCACAACATGCTGTGCGCTGTGTATACAAGAGAGATGCCAGTCAAATCCACATCTGTGAAGTGTGTGGTAAATCGTTCCATCTAGAAACTCTCCTGCAAGCACATCAGAAGATCCACACGAGAGTCGATTGTACGGAGTGCGGGAAGACCGTAAAAGCTTCAAACATCCAAAATCACATGAAAGCCCATGCCGGAATAAGTTACGTAGCAGATAAACCAGTGAAAACTTTCCCGAAAATTGAATGTGAAGTCTGCGGTCACATGCTGAGGAAGAAGTGTGATTTGGACGCGCATATGAATAGGTTTCATCTGAAAATTAAACCGTACGTTTGTCATATATGTAACAAAAGTTTTTGCGGTAAAGCACGTCTGAGCGAACATCTATTGACGCATACAAACAGTAACGCTTGCTACTGTACAATATGCGGAAAAAAGTTTGCCAATAAGGTGTGTTTGAAAATGCACCTACGTATACATACCGGAGAGTGCCCTTACGCTTGTGACATTTGCGGAGAGAAGTTCAGATCATCGAGTATTATGAAAACGCACAGACTTAAGAAGCATTTAGAGAAGACTGTGGCATGTCCGTCGTGTGATAGCATGTTTCATATCGTTCGAGAAATGCGTCATCATTTCAAAAATGTACACTGGAAGGTTAAAAATAAGCCGTTTAACTACAAAGAGGCAGTACCCCCGGAGTACTACTATCTGTTCGAAGATGGAAGATTGCCGAAAGTTGGTTCAGACGAGACTACTGAAATAGTATAA
- Protein Sequence
- MEDDLENEISKTKNIEWLKNKLTAVWNSSKFCGMCLNNSGNLNSVNMEFVVGSQKDSKSLIDVMNYVFKDDIENIMSSTYVCDFCTEKTLQSYLFIHNTKQLSKIISNCVMDIYSKVVDVRDQVLESFDWENANIMIVLENDTELYEEIDDIANVTEIVPRDKPIVKKRVTPKIEKSVKVNEDIHNHVKTRPLERKDVVKTADQPKLANRDRTPNISFEKGKIVVKPMKTITSLPSVPSYTTYKCKNCPDIFTTYRSLKEHEKAKHKSQIYQCKLCDKSYNTQQYLNLHYKNHSKSRCKICQIILSEKDLFIHLKETHPHLVYPCQFCELVYYTEEALGTHFKADHLINNTASQSQCIMCLKEMSKMDLKAHKCKFSCSDCFVMPCIHYSYLIAYREQILKHATKVNCIDCDYITHRKEYLVTHVNREHLDYHPFTCNDCGMQFYTKLSLKNHIEQYHIDNICTYCDNTFKNRNLLYEHRKSCKLTIRAFNCNKCLASFDKEEDFTKHEFLRHSNGGFVCKLCNRRFLEEIHLEEHRVTAHSSIQFKKRRKNIECSLCDIKFNNVKELVKHEEFHGPNSIYPCRKCDKQFYSLKKLYMHQARHYDRIACSGCKKRIISVFYPQHAVRCVYKRDASQIHICEVCGKSFHLETLLQAHQKIHTRVDCTECGKTVKASNIQNHMKAHAGISYVADKPVKTFPKIECEVCGHMLRKKCDLDAHMNRFHLKIKPYVCHICNKSFCGKARLSEHLLTHTNSNACYCTICGKKFANKVCLKMHLRIHTGECPYACDICGEKFRSSSIMKTHRLKKHLEKTVACPSCDSMFHIVREMRHHFKNVHWKVKNKPFNYKEAVPPEYYYLFEDGRLPKVGSDETTEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01312471;
- 90% Identity
- -
- 80% Identity
- -