Spav012138.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- -
- Assembly
- GCA_947532125.1
- Location
- OX383923.1:8075690-8086007[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.002 0.11 13.3 3.6 1 19 252 270 252 275 0.91 2 11 0.0022 0.12 13.2 1.4 2 23 283 304 282 304 0.97 3 11 0.42 23 6.0 2.6 1 23 308 330 308 330 0.97 4 11 0.0013 0.07 13.9 5.4 1 23 335 357 335 358 0.94 5 11 0.75 41 5.2 0.0 3 23 365 386 365 386 0.97 6 11 0.36 20 6.2 0.2 3 19 395 411 394 413 0.93 7 11 0.00012 0.0068 17.1 0.2 2 23 425 447 424 447 0.93 8 11 6.7e-05 0.0037 17.9 2.2 1 23 454 477 454 477 0.98 9 11 0.0011 0.061 14.1 1.2 2 23 491 512 490 512 0.96 10 11 7.5e-07 4.1e-05 24.1 0.9 1 23 518 540 518 540 0.99 11 11 0.00011 0.0058 17.3 0.1 1 21 546 566 546 567 0.92
Sequence Information
- Coding Sequence
- ATGAATGATGATATAAAATGTGATATATTGATATGCCGCGGGTGTCTCAGTTCGGGCCGTATGTACAATATACATGAGAATCGTCTCGCAGACATCTACAGCATGCTTGTCGGCGAGTCTGTGTCTCCCTGTGACAATCTTCCACAGCACTTATGTCATATGTGCAAAGCTCTACTTGTCAAATATGCAGCGTTCAGAAGAATGTGTCAGGAATCCCAATGTATTCTTCTAGAGTCAATAAAAGATGATATCATGACATCACAGGGTATAACAAATATGTGTAAACTCGAAAAACCTTCATATGTAACTTCAAAAACAGTAATAACTCAATATCCGGAATCCGAAATCAAAATAGCCGAGGTTCTGATCAACACTACCCTCGTATATGAAGAATCGAAAATCAAACTGGAAGATATCTCACCACCTGAGTCGGTTGGAAGTGATTTTAGTAATGGATGTAATGATACCTTGGAACCTACGTCAATTATAACCTCAAATATAACCTCAAAAAATGAGAAGAAGAGTAAAATAAGAAAGAAGAAAGCAGTAAAAAGAGAAGTTATTAATAAAACCGATAAAGTTTACAAACGTGCACAACGTTTAGATCGTATAAAAGGTAAATATTTTGAAACCAAAGAAAATATGTCAACTTTCGAAAGTTTGTACGATGTCGAAGTAGTCATACTTAGTAAAGAACAGCAAATGAAAGACGTGCTGGATAGGAAATTGAGTTATAACTATCAGAACGGGCCATTCAAATGTGATGACTGTTACAAAGGTTTTATAGATGAGGATAATTTCAAGAAACATTGCAAAGCTCAGCATGATCCGAGTCGAGGGAATATTGTATGCGAATTCTGCCGGTTCCGATACAAGGACAAACGAGGACTGAACCAACACTTGAAGAGTCACAGGTTGAAGTTCGTATGCCGGCAGTGCAAATACGTGTCACGGACCACATTTAACGCGAAGGAACACTTTAAGATGCACGGAGGACAAATGCACGATTGTAAAAAGTGTGAGAAATCTTACGAAAAGCTGTCGACATACTTGACGCACATGCGCATCCACCACCCTGAGGAGTTGTCGTGGTGCGAGCTCTGCGGGGACCCGTTCATCGGGGAGTTTGGCCTCAACGCTCACAAGAAGCGAGCGCATCGAGACTTGAAGTTCCCAGCGGATTGCGAACGCTGCGGGGTGCGGTTCACGAGCGGACACGCGTTCGAATCCCACGCGGAGTTATCGCGCGACGTGTCCTGCGACGCGCTCTCCTCGTGTGCCCACTGCGGTCGCGTGTTCGACTCCCCGGTCGAGCTGCGCGATCACTTGCTCGAGAACCATCGGAGCGATAAGAAATATTACGAATGCTTCAAGTGCAACAAGACCTTCGCGAGGGAGTCCCTGTACAGTGCGCATTTCAGAAGGATGCACGTCGAGGAAACGAAGCGGAGGTGCGTCCTCCAGCCCTGGGTCTGCGAAGTCTGCGGGAAGACTCTCCCGAACAAGTGCCGCTTGATGTACCATCAGCGGAACCACACGGGCGAGAAGCCGTACCAGTGCCCCGACTGTCCCAAGAGTTTCACCATGAGGAAGTTACTCAGGTCGCACAGCCGCGTCCACTCGAGCGAGCGGCCGTACGCTTGTAAGTACTGTCCCAAGACGTTCAAGGGTCCTTCAGCTTTAAGGGGACACGAGAACGTGAGTTAA
- Protein Sequence
- MNDDIKCDILICRGCLSSGRMYNIHENRLADIYSMLVGESVSPCDNLPQHLCHMCKALLVKYAAFRRMCQESQCILLESIKDDIMTSQGITNMCKLEKPSYVTSKTVITQYPESEIKIAEVLINTTLVYEESKIKLEDISPPESVGSDFSNGCNDTLEPTSIITSNITSKNEKKSKIRKKKAVKREVINKTDKVYKRAQRLDRIKGKYFETKENMSTFESLYDVEVVILSKEQQMKDVLDRKLSYNYQNGPFKCDDCYKGFIDEDNFKKHCKAQHDPSRGNIVCEFCRFRYKDKRGLNQHLKSHRLKFVCRQCKYVSRTTFNAKEHFKMHGGQMHDCKKCEKSYEKLSTYLTHMRIHHPEELSWCELCGDPFIGEFGLNAHKKRAHRDLKFPADCERCGVRFTSGHAFESHAELSRDVSCDALSSCAHCGRVFDSPVELRDHLLENHRSDKKYYECFKCNKTFARESLYSAHFRRMHVEETKRRCVLQPWVCEVCGKTLPNKCRLMYHQRNHTGEKPYQCPDCPKSFTMRKLLRSHSRVHSSERPYACKYCPKTFKGPSALRGHENVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01316735;
- 90% Identity
- -
- 80% Identity
- -