Spav018415.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- -
- Assembly
- GCA_947532125.1
- Location
- OX383905.1:1997396-2005782[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0066 0.36 11.7 1.8 2 23 31 52 30 52 0.95 2 13 9.7e-06 0.00053 20.6 2.9 1 23 90 113 90 113 0.97 3 13 0.054 3 8.8 1.1 1 23 115 137 115 137 0.89 4 13 9.2 5.1e+02 1.8 0.6 1 14 146 159 146 168 0.73 5 13 0.28 15 6.5 0.2 1 23 173 195 173 195 0.97 6 13 3.4e-06 0.00019 22.0 0.2 1 23 282 305 282 305 0.92 7 13 0.0078 0.43 11.4 3.1 3 23 316 337 314 337 0.96 8 13 1.9e-05 0.0011 19.6 0.3 2 23 343 364 342 364 0.97 9 13 4.5 2.4e+02 2.7 7.6 3 23 372 392 372 392 0.97 10 13 0.001 0.055 14.2 0.2 1 23 397 419 397 419 0.96 11 13 0.00065 0.036 14.8 4.2 1 23 425 447 425 447 0.97 12 13 3.7e-05 0.002 18.7 1.0 1 23 453 475 453 475 0.98 13 13 1.1e-05 0.0006 20.4 0.3 1 23 481 504 481 504 0.97
Sequence Information
- Coding Sequence
- ATGGCTTCACTACCACATTTAGAAGAACAAAACATTCAGGTTAGGTGCTTGCCTCCGAAGCCAACAACTATTGATTTAATTGGCGGGATATACTGCCACATCTGCAATTTAACATTTGGTAATAAAAAAGAATTTGACAGTCATTATGAGAACCATAAAACAGAGAATGAAGAAACTGTGTACACTTGCGTCATTTGTCGCAAACAGATTACAAGTTACAAAAGCTTCGTGGGACATTGCTACCTTAATCATGTTGTTAAAGACAAATTTAAATGTCAACATTGCTCTAAAATGTTTTCAAAATTAAGTAATTTAAGTCAACATGTGATTACAGTGCATACCTTCAATTGTATCACATGTCATCGAAAATTCCCATCTAAAAAAGAATTGGTTGTTCATGAAATTTTACACAAGATAGAGAAAAGTAAACCTCCATACTCTTGCCTGATTTGCAAAAAAAATATTGACAACAGCGACGTGTGTGAAATGCACATTGACGAGCACAGCACTACATCATACCCATGTCTGTTATGTGAAGAGACCCTAACCACCAAGCTCGATGCTGTTAAGCACTTAACTAAACATTTTGGCAACGTACTTAGTGAATGCAATTTGATGAAGATCTCTGAACCTCAGAATGAAGACTCCTCTATAGATATTATTGGTGGTATCCTATGTTGTTTCTGTGATGATTTGTTCAAGACAAGAACCGAGTTTGATCTTCATTTTGTGGCTGAACATAGTGACAGGGAACTCACGTACACATGTATCATCTGTAAAAAACAGTATGATAAATACATGCTGTTTGGGAACCACTGCCATTTTCATATCACAAAGAATAAGTTTGAATGTGACGACTGCGGTAAAATGTTTTCACGCCTGTCTCTCCTCGTTACTCATACCGAGGCGTACCACTCGGGCGAGGCGGTGGCTAAACCGTTCGGTTGCAACATTTGTGGACACGCGTTTAAGAGCAACAACCGCCTGGTCTACCACAGGCGTCACGTTCATTCCATGGCTGTGATCGAATGTCCTCAATGTGGTAAAATGTTCGAGTCAAATCGAGATATGTTACTCCATCTGCGCAAACACAAAAACATTCAACAGAACTGGTGCCGGCACTGCAACCTGCACTTCACCACACTCTCCTCGTGCGAGAAGCACCTCGATGTACACCGCATAAAGCACTACTCGTGTCCTATCTGCAGCAAGGAATATAAAGAGAAATATTTAATCATCAAACACCTAGCGCTCCACTTCGAATCTGTCCTGCACATCTGTAAGGTGTGCAGTAAGTCGTATAACTCCAAGGGACGACTTCAGCAGCACAAGAAAACACACGCAGCTGTAAGTAGTTACACGTGCACGTACTGCAGCAAGGGTTTCTTCAAACCTATCGACCTAAAGCAGCATCTAAACATTCATACCGGTTCAAAGCCGCACAAATGTCCGGACTGCCCGAAGTCGTTTGCCAGTTACCCGAACTGGGCGAAACATGTGCAACGCATTCACAATATCGATTATAAACTGAGAAAGCAGATTTTCATGGAATGCAACCAGATTAATAATGCTGAGGTGAATACGAACCCTGTGACCGAGGTAGCGGCTGCCGGCCCAGTACAGCACCCAGCCGTCGGGGAATACGATGAGAGCGCGATCGACAACATAGACCCTGCTACGATCCAGAAGGAGCTGCAGATGTTCTGTGAGAACAACAACGCCCAGAACTGTGAGCTGATCTTCGATATTGATGACATGCTACCAGAGAACACTGCCACGTTCGTCACCGGTACAGGGAAGGGCGGCAGCTACCCCCACCTTTTGCGCCAAGTTGTTGGTAATCGTGCCGGTGTGGAACCGTCAAACAGGCAACATTTCTGCTCCTTCCTATAA
- Protein Sequence
- MASLPHLEEQNIQVRCLPPKPTTIDLIGGIYCHICNLTFGNKKEFDSHYENHKTENEETVYTCVICRKQITSYKSFVGHCYLNHVVKDKFKCQHCSKMFSKLSNLSQHVITVHTFNCITCHRKFPSKKELVVHEILHKIEKSKPPYSCLICKKNIDNSDVCEMHIDEHSTTSYPCLLCEETLTTKLDAVKHLTKHFGNVLSECNLMKISEPQNEDSSIDIIGGILCCFCDDLFKTRTEFDLHFVAEHSDRELTYTCIICKKQYDKYMLFGNHCHFHITKNKFECDDCGKMFSRLSLLVTHTEAYHSGEAVAKPFGCNICGHAFKSNNRLVYHRRHVHSMAVIECPQCGKMFESNRDMLLHLRKHKNIQQNWCRHCNLHFTTLSSCEKHLDVHRIKHYSCPICSKEYKEKYLIIKHLALHFESVLHICKVCSKSYNSKGRLQQHKKTHAAVSSYTCTYCSKGFFKPIDLKQHLNIHTGSKPHKCPDCPKSFASYPNWAKHVQRIHNIDYKLRKQIFMECNQINNAEVNTNPVTEVAAAGPVQHPAVGEYDESAIDNIDPATIQKELQMFCENNNAQNCELIFDIDDMLPENTATFVTGTGKGGSYPHLLRQVVGNRAGVEPSNRQHFCSFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00113635;
- 90% Identity
- -
- 80% Identity
- -