Spav010248.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- -
- Assembly
- GCA_947532125.1
- Location
- OX383920.1:2109086-2121890[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.47 26 5.8 2.8 2 23 143 164 142 164 0.91 2 11 2.1 1.2e+02 3.8 0.1 7 20 187 200 181 204 0.79 3 11 2.5 1.4e+02 3.5 0.1 10 22 255 267 253 267 0.91 4 11 6.3e-05 0.0035 18.0 0.4 6 23 280 298 278 298 0.96 5 11 0.00018 0.0099 16.6 3.2 1 23 320 343 320 343 0.98 6 11 0.00011 0.006 17.3 0.4 6 23 354 372 352 372 0.96 7 11 3.6e-05 0.002 18.8 2.5 1 23 394 417 394 417 0.98 8 11 0.00038 0.021 15.6 0.4 6 23 428 446 426 446 0.96 9 11 0.0017 0.091 13.5 5.4 1 23 468 491 468 491 0.98 10 11 0.00044 0.024 15.3 0.5 6 23 502 520 500 520 0.95 11 11 0.00061 0.034 14.9 2.0 1 23 542 565 542 565 0.98
Sequence Information
- Coding Sequence
- ATGTCTGCACCAATACTGAAACAAGAATTAGTAGAGTGCATAGATGAGGAAGAATCAGCTTGCAGTGTCAATGTGAATCAATTTGAGCCCTTGGAGCCATGTGAGTTTGTGAATTACTATGATAATAAGGAATATGCGTTGGTACAACTGAAGAAGGAATTACCTGAGGATGAATGTCTTCAATCTCGTGTCAGTTTGAATAGTAACATAGTTTTTGAAAACATGGAATTATCAAAATTTATAGACGATCAAAAAATAAAACATGAAAATATAGAGGATGGACTGTATTTACAAATAAACGAAGAAAATGTCAATAAAATGTACCATGTTACAAAGAAAAAAGAGAGGCTAGAAGAACCAGAATTTTTGGATAATGCTGGAGCGACTAGTATACATTATGATGTCCTGGTAACTCCTCGAGTAGTTCAGTGCAAGTTGTGTTGTCGTATATTCGAAAACAGTTTCAATTTATTAAAGCACAATTACGAACACATTAAAGTTGAAATAAACACATCAGAGGATAAAGAAATGATTGCGTTACACCAGTGCCAATATTACGACAAAGTTTTCAAAAATAGCGATAACATTCTTGCACATGTCGGTGATGTTCACAACCAGAAACAACCTAAAGACAAATTATGCCTAAAACAATTACCCAGCACCATGTACCCTGATGGTAACATTAATGGTACAAATAATGACAAACTTACTGATAAGAAGGTTGAGAAAATGAGATATATATGTGACTCAAATGAAGGTAATTTTAAAAAGAAAAATTCTTTAAGAAACCATATAAAGAAGATGCCTTATGATTACGGGAGAACGTTTGCATGTTGGTGCGGGAAAGAGTTCCGTTCACCGGCATACTTACGTGACCATATGAGGCGGCAGCATGATGGTAACATTAATGGTACAAATATTGACAAAATTACTGGTAAGGAGGTTGAGAAAATGAAATATAAATGTGACTCATGTGAAGGTACTTTTAAAAGTAAAGATTATTTAACTCGGCATACAAAGAGGAAGCATTATGATTACGGGAGAACGTTTGCTTGTTGGTGCGGGGAACGGTTCCGTACACCGGCATACTTACGTGAGCATATGAGGCGGCAGCATGATGGTAACATTAATGGTACAAATATTGACAAAATTACTGGTAAGCAGGTTGAGAAAATAAAATATAAATGTGACTCATGTGAAGGTACTTTTAAAAGTAAAGATTATTTAACTCGGCATATAAAGAGGAAGCATTATGATTACGGGAGAACGTTTGCTTGTTGGTGCGGGGAACGGTTCCGTACACCGGCATACTTACGTGGGCATATGAGGCGGCAGCATGATGGTAACATTAATGGTACAAATAATGACAAACTTACTGGTAAGGAGGTTGAGAAAATGAAATATAAATGTGACTCATGTGAAGGTACTTTTAAAAGTAAAGATTGTTTAACTCGGCATACAAAGAGAAAGCATTATGATTACGGGAGAACGTTTGCATGTTGGTGCGGGAAACAGTTCCGTACACCGGCATACTTACGTGAGCATATGACGCGGCAGCATGATGGTAACAGTAATGGTACAAATATTGACAAAATTACTGGTAAGGAGGTTGAGAAAATGAAATATAAATGTGACTCATGTGAAGGTACTTATAAAAATAAATATTATTTAACTCTGCATATAAAGAAGATGCATTATGATTAA
- Protein Sequence
- MSAPILKQELVECIDEEESACSVNVNQFEPLEPCEFVNYYDNKEYALVQLKKELPEDECLQSRVSLNSNIVFENMELSKFIDDQKIKHENIEDGLYLQINEENVNKMYHVTKKKERLEEPEFLDNAGATSIHYDVLVTPRVVQCKLCCRIFENSFNLLKHNYEHIKVEINTSEDKEMIALHQCQYYDKVFKNSDNILAHVGDVHNQKQPKDKLCLKQLPSTMYPDGNINGTNNDKLTDKKVEKMRYICDSNEGNFKKKNSLRNHIKKMPYDYGRTFACWCGKEFRSPAYLRDHMRRQHDGNINGTNIDKITGKEVEKMKYKCDSCEGTFKSKDYLTRHTKRKHYDYGRTFACWCGERFRTPAYLREHMRRQHDGNINGTNIDKITGKQVEKIKYKCDSCEGTFKSKDYLTRHIKRKHYDYGRTFACWCGERFRTPAYLRGHMRRQHDGNINGTNNDKLTGKEVEKMKYKCDSCEGTFKSKDCLTRHTKRKHYDYGRTFACWCGKQFRTPAYLREHMTRQHDGNSNGTNIDKITGKEVEKMKYKCDSCEGTYKNKYYLTLHIKKMHYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -