Spav003086.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- -
- Assembly
- GCA_947532125.1
- Location
- OX383921.1:2601951-2639845[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.044 2.4 9.1 0.1 2 23 478 499 477 499 0.94 2 17 0.064 3.5 8.6 0.2 1 23 509 532 509 532 0.95 3 17 1.1 58 4.7 0.5 2 21 627 646 627 647 0.93 4 17 0.024 1.3 9.9 1.9 2 23 711 732 710 732 0.95 5 17 4.3 2.4e+02 2.8 0.4 1 21 744 765 744 768 0.77 6 17 0.00021 0.012 16.3 1.6 2 23 775 798 774 798 0.97 7 17 0.089 4.9 8.1 0.2 1 23 804 826 804 826 0.93 8 17 0.0013 0.074 13.8 3.4 1 23 832 854 832 854 0.98 9 17 0.049 2.7 8.9 0.1 2 20 865 883 864 885 0.90 10 17 0.1 5.5 7.9 0.2 1 23 964 986 964 986 0.97 11 17 2.6 1.4e+02 3.5 7.2 1 23 993 1015 993 1015 0.95 12 17 0.0018 0.097 13.5 1.8 1 23 1054 1077 1054 1077 0.95 13 17 0.017 0.96 10.3 0.3 1 23 1084 1107 1084 1107 0.96 14 17 0.022 1.2 10.0 0.1 2 23 1124 1146 1123 1146 0.95 15 17 0.0023 0.12 13.1 2.0 1 23 1197 1219 1197 1219 0.98 16 17 0.00049 0.027 15.2 0.1 1 23 1225 1247 1225 1247 0.98 17 17 0.0008 0.044 14.5 0.6 3 23 1255 1276 1253 1276 0.95
Sequence Information
- Coding Sequence
- ATGAGTGAATCATTGCCACCGCTGATGCTCTGCATGGAGAATGCTATTGGTGAAGAAGTTACATTAAGGATAGAACCTGAAGATGATTTTCATACATTTTTAGAAAAGGCCAAATCTATATTGGGTAGTGATATTGATATAAACTCAATAACAGGAAACCAAGTTGTCTCTCTAACTGACAACATATATCAATTCCTATCAAACGCTGAACATAATCCAGCAATTAATCAGACATTAGAACGAAATGGCTCTAACGATCTAGTATATATTCTGGATGATGGTACTCAGATTAGAGCTTCACAGATACATTTTGACAATGACGACCCACCTGTAGATTTGACAACGGAAAAGATACCCTTTGTGAAATACGTTAATAATCCTGGAGAAGAGTTGGAAGTAGAGAATGATGAATATGAAAAAACAGTAACATATAATATCGTTGGAAGCCCAGTTTTGCGGCGATCAAGCGGTAATTCGAGTCCGAAATCTTTTACCAGCACTTTACCTTTCAAATTGGTATGCAACAATACTTCGGGATTTGAAGCACAATTCACAAAGTATTTAAAAGCAAATACTACAAAAACTTACGCCACTTTAAACAATGCTAGCAACAGAAATATGTCACCCAAGAGTCTGATACGCGATAATTATACAAAATATGACGATAAATATGAACATAGAAACGATAATTTCACTTATACAAGAGAAGATGTTTTAAATATGTTCAAAAATTCTCCCGTGAACTGTTTACCTTACGAAGGGTTTGGCGAAAGAAAACATGTCAGAAAGACAGATCCATTTCGAATTCATAAGACTTACAGACCAGTTTCGTACGATATTGATGGACTTTTGATTAGCGATAATGGGAATCACATATGTTTTATATGCGATAAGAAGGTCGAAAAAGAGAAACTATTTTTATTCGATAACGAGGACCAAAAAATTTATAGATGTTCCCCGCAAAAGAAGTCAGAGACACAGTTGAAGATTATATGCGAGTATTGTTTGACTGAAAACTTCATGCCGTGTCGAATGAAGAGCGCTAACCAATTCTTGGGACCTGACGAGTATTTGGTGATAAGAAATAACCAGCAGTTTATATTTAAGAAAGTCAAAGATATAGATTTAAAAAAAAGTTTCTCTGTATCTAATGTCGAAGGTAATGACAATAAAAAAACAGTTATCGATGAATTTGTCAAAGTAGAGATCGGATCCGATGGAGAGATCATAACCAAGCCGGTGGATGAGAAGTCTGATGACGTTATAATATTGAAAGAAGAAAAAAGGGATGGTAGTTCGAGCGACGTTGAGATAATAGAACCGGAAACTGAAATCGATACGATAATAGACAATTTGGAGGACGCTGATGAGGATGTGAAAGAGTTTTTAGGGAAGTATCAGTGTGATAGCAAATCTAATATGGAAGAATTGAAATGCAGATTCTGTGAAAAAGTTTTCGCTGATATATCAGAAGTGATGAACCATGGTGAAATCCACAAGCACAATTTGGATGACGGTCAGCTTTTCCCTTGCTTGCTATGTGATTACGGCTATGCTCATTTAAAATGGTTGAAGGGTCATCTCAAGGCTGCTCATGAGAAAAATGAGAAAGCTGTTAAAGTGGAGACTGATGGTGCGACTGATAATAGTAAGAGCGAAAATCCTGATAAACCCCAAGAAGAATTAAAATTGGAAGTGCACGCCGAAGTGATACAAATAAAGACTGAGGTCAACCAAGAAGACGCGAAAAGTAGTGATGATGAAATTTGGATCGTTCAGACGGCTGATGATGAAGCTAGCGAACAATTGCAGAACCTGCTCAATGCAGCCAAGGTCGTCGACGAGGAAGGGACCGCCGTGAAAAGTAAAAAATCGCCAAAATGTCTTAACTGCAGTCAAATATTCCCAACGGTCGAAGCGTTGGCAACACATAGATGTCGCCGGCGTGGTAGGAAACGGAAACAAGCAGGCAACACCGACAATACTATACGCATACCGACTAAAGAAGATTTCATAAAGAGAGCTCAAGGCCGGCCAAGATTTATAGACACATCCACTGATAACAGTTTGCTAGTGGAGAGAATAAGAAAAAATAAAACAAAAGAGCCTACATCAGACCCGCAGATACTCACCTGCGACAACTGCAACGAGTCGTTCACGTCTAAAGTTAGACTCAAGTTTCATATgcagttccacgAGGCCACATCGATGGTAACGTCTGACGGGCAGTACGCCTGTCCCGACTGTCCAGAATCGAAATTCCCTACGGAGACGGCGCTGTTCGATCACGTACACTTCCAGCACGACAAGCAAAAACGTTGGCAGTGTCCGGTCCGCGACTGCGGGAAGACCTTTCATTTGCGAGCAACCCTGACTAAACACAGTCGCACACACACCGACACACGGCGCTACGTGTGCGTCACGTGCGGAAAGAGGTTCCTCGATAAACAGACCCTCGACGAACATGGAGTCACTCATCTGCAGATAAAGCCGTTCGAATGCCACATATGCAGGAAGCAGTTGACGAGGCGGTCGCGGCTGAGGATGCACTTGCGCGCCCACGAGGAGGAACTCGCTCCGACCCTGCTGCTGGTCTGCCGGCGATGCGGCCGGGCCTTCCGTGACCCTAACCATGCACAGGAGCACGCTGCGACCTCAACGGAGTGTATAGAAGCGTTTGTCAACGAGCTGAAAGAGGAACCCGAAGAGCCTGATGTCCAGCTGTCGCCCACCAGTGGGATAGTTAGACATACGGTCCAGATTATAGAATCACCGAAAAAAAGTAAGCCGATACCGAGGCAAGTGGCGAGCCCACTGGCCGAGCCACTACTCGCGCAAGTAGCTGACGAGGCGAAGACCATCATCCGGGTTGTGGAGATCGAGAAGGCATTCAGATGCGAATATTGTGAAGATGTTTTCTATTTGGAGGAGAGCCTGAACGAGCATCGCGCCATACACAAGGGCGTGAAAAATCCCTTCACTTGTCACATTTGTAAAGTCAGTTTCGCGACTTATTCAAGATGTACGACGCATAAAACAACTCACGGGTTCTACAAGCGACCCTTGGCTGATGTCAAGAAGCAGACGGAGGCTCGGGTGGAGGCGGGGCCCTCCGCCACTGGAATCCTCGGCTACGGTGATTTCCCTGTCGTCAAACATTTCCTTTGCGAGGATTGCGGCCGCTCGTACCTCCACTGGACGTACCTTCAAGTCCATCGGCGCATGAAACACGCAAACGAGAACTTCACGTACGCGTGTAGCCAGTGTGAAATGACCTTCCCCAATAGCTGGAGCGTGGCGTATCATCGTAAGAAGATCCACGGGAAATCCGGACCTATGGCTTGCACCAGTAAAGAAAGTTATAGGATCCAATGTCGGGACTGTGAGGAAGTGTTGCCGAATAAGACGGCTTTGTACAAGCATAGGAAAGAAGCACATAGTGACTGCTCATCCAAGGTTAAAAGGCAAGGTATAGCCACTTCAACGGCATGTGAAATTCACCAAGCCGTTGGACAAGACAAGGCATGTTCTGGCTGCAATCGAGTTTCTCAAAGCGCTGAGGCAACAAACATCAGGGATGTCCGGCCGCATCGTTGCCCGGTTTGTGATCACGGGTTCCGCACAGTTTCACTGAGGAACGAACACCTGAGGATCCATACCGGGGAGCGGCCCTATCCCTGTGACCTCTGCCCGCTTGCCTTTAGACGATCGACGGCTATGCGCAATCATAGATTAATACACAGTGGAGTACGCGCCTGGGCTTGTGCTCGCTGCCCGAAGCGTTTCCGCATACGTTCTGAATTGCGCACGCATCTGCGGCTCAAACATCCCGTCAGCATGCTCGTCATAGAGGTTGATGGTTTGAACCCGACACACGAGGACATTATGAATGTTTTGGCTGTCAATGAAATCTCAAGAGAAAAAGTCAGTGAGATCACCAGGATATCGTTTTCGAAGGGCACATCGAGCATAGTTCCGAACAGTGCCAGGGCTTTGTCCATGTTAAGTCACGTACCACGCACTCAAGTGGCTTGCGGAAGACCAGCTCCGGAACGAATTGTGGAAGATTACCGACCGGCTCGCCGTGGTAGGGGTTTGTGTAAAGCCCCAGGCAGATTTCAACTGCCTTTTTCATCTGGATCACTTCCTGCTGAGGAGCAGGCCGTTAGGACACCGACACACAATACCGAAGTGGGGGAGGAGGTGCCGGATTTGAACGTGCGACTTATGCTCAGTGACGGTTCACTTGTCGACGGTACCCAAATGGTTCAGTTACAATTTGACGATACCATGCTTTTAGAGTAA
- Protein Sequence
- MSESLPPLMLCMENAIGEEVTLRIEPEDDFHTFLEKAKSILGSDIDINSITGNQVVSLTDNIYQFLSNAEHNPAINQTLERNGSNDLVYILDDGTQIRASQIHFDNDDPPVDLTTEKIPFVKYVNNPGEELEVENDEYEKTVTYNIVGSPVLRRSSGNSSPKSFTSTLPFKLVCNNTSGFEAQFTKYLKANTTKTYATLNNASNRNMSPKSLIRDNYTKYDDKYEHRNDNFTYTREDVLNMFKNSPVNCLPYEGFGERKHVRKTDPFRIHKTYRPVSYDIDGLLISDNGNHICFICDKKVEKEKLFLFDNEDQKIYRCSPQKKSETQLKIICEYCLTENFMPCRMKSANQFLGPDEYLVIRNNQQFIFKKVKDIDLKKSFSVSNVEGNDNKKTVIDEFVKVEIGSDGEIITKPVDEKSDDVIILKEEKRDGSSSDVEIIEPETEIDTIIDNLEDADEDVKEFLGKYQCDSKSNMEELKCRFCEKVFADISEVMNHGEIHKHNLDDGQLFPCLLCDYGYAHLKWLKGHLKAAHEKNEKAVKVETDGATDNSKSENPDKPQEELKLEVHAEVIQIKTEVNQEDAKSSDDEIWIVQTADDEASEQLQNLLNAAKVVDEEGTAVKSKKSPKCLNCSQIFPTVEALATHRCRRRGRKRKQAGNTDNTIRIPTKEDFIKRAQGRPRFIDTSTDNSLLVERIRKNKTKEPTSDPQILTCDNCNESFTSKVRLKFHMQFHEATSMVTSDGQYACPDCPESKFPTETALFDHVHFQHDKQKRWQCPVRDCGKTFHLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFECHICRKQLTRRSRLRMHLRAHEEELAPTLLLVCRRCGRAFRDPNHAQEHAATSTECIEAFVNELKEEPEEPDVQLSPTSGIVRHTVQIIESPKKSKPIPRQVASPLAEPLLAQVADEAKTIIRVVEIEKAFRCEYCEDVFYLEESLNEHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRPLADVKKQTEARVEAGPSATGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFTYACSQCEMTFPNSWSVAYHRKKIHGKSGPMACTSKESYRIQCRDCEEVLPNKTALYKHRKEAHSDCSSKVKRQGIATSTACEIHQAVGQDKACSGCNRVSQSAEATNIRDVRPHRCPVCDHGFRTVSLRNEHLRIHTGERPYPCDLCPLAFRRSTAMRNHRLIHSGVRAWACARCPKRFRIRSELRTHLRLKHPVSMLVIEVDGLNPTHEDIMNVLAVNEISREKVSEITRISFSKGTSSIVPNSARALSMLSHVPRTQVACGRPAPERIVEDYRPARRGRGLCKAPGRFQLPFSSGSLPAEEQAVRTPTHNTEVGEEVPDLNVRLMLSDGSLVDGTQMVQLQFDDTMLLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -