Spav010302.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- -
- Assembly
- GCA_947532125.1
- Location
- OX383920.1:2602752-2610971[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00026 0.014 16.1 2.5 3 23 177 197 175 197 0.94 2 12 0.00027 0.015 16.0 4.1 1 23 214 237 214 237 0.96 3 12 2.1e-06 0.00011 22.7 0.6 1 23 242 265 242 265 0.94 4 12 0.006 0.33 11.8 0.7 2 20 280 298 279 300 0.94 5 12 0.004 0.22 12.3 4.2 1 23 313 336 313 336 0.98 6 12 0.088 4.8 8.1 1.0 6 23 347 365 345 365 0.93 7 12 0.15 8.2 7.4 2.4 6 23 382 400 377 401 0.92 8 12 0.0041 0.23 12.3 1.2 6 23 411 429 409 429 0.95 9 12 1.7e-06 9.2e-05 23.0 1.5 1 23 441 464 441 464 0.98 10 12 0.0056 0.31 11.9 2.0 5 23 474 492 472 492 0.95 11 12 0.00078 0.043 14.6 5.3 1 23 508 531 508 531 0.97 12 12 0.004 0.22 12.3 0.6 5 23 541 560 539 560 0.95
Sequence Information
- Coding Sequence
- ATGGACAGTAGTGTTCATCTAGAATCCAGTTGTGACACTTTGAGTATCATAATCCCAGGGGCACAAAGGAAGCCAACACAAACAATGAACGAAGAAATTAAAGAAGAAACAACAGTAAAATTTAAAAATAAGGAAGAATTACCTTGCCGTGACTATATGCCAGTCATTATATTCCAGTATCCATATGAGCCCTTAGACCCGTCAAAGTTTGTGAATTACTATGATGGTGAGGATTCATTGTTTGAACTGAAGGAGGAATTCCCTGAGGATGAATGCCCTCAATCAGACTGCAATATGAATAGTAAAATAGTTTCTGATAATACCAACTCATTAACACTTATACACAAACAGATAATAAAAATTGAAACTACAGAGGAGGAATTGTCATTAAATTTAAAGGAAGAAAATGAGGATAAACCATACAAGTTTAACATAAAAATGGAGATAATTGAAGAGCAAGATATATTGGTTAACACTGAAGGGACTAGCATACATTATGATGTCCTGGTAACTCCTCAAGAAGTTCACTGCAAATTGTGTGGTAGAATATTCAAAAATAGTTTTAATTTATTAAAGCACAATCAAGAACACATAAAAGTTAAAATAAAAATACCAGGGGTTAATGCAATGAATGAACTACACCAGTGCCAATATTGTGACAAACATTTTGATAACCACGATAATATGCTTATACACATCAGCATTGTTCACAACAAGAAAACACATAGATGTGAATTGTGTGGGATCCAATTCAAGAGCGCGTCGAATCTTAAACGTCACATCGTAATTTTACACAAGTGTAACATTTCTTCAAAGCAAGTAACTAGAAACAGTGTGAAATGTAAATATTGCAATGAATATTTCGAACACGGATATACATTGTATAAACATATGGAACTATGTCGTACTGGTAAGGGGGATGAGGGAACTAAAATGTTCAAGTGTGACTCATGCGATTGCGTTAGTACAAGCAAACGTACTTTAAAAATGCATATAAAAAGAACTCATTATGAATATGGGGGAACGTTTGCATGTTGGTGCGGCGAGCAGTTCCGTACACCGATACACTTGAGTGAACACAAGAGCTCACGACATGGTACCAAGAGGAAAAATAAAGAAGATGGAGTATTCAAATGCATATGTTGCGAGGCGGTATTTAATGAGAAACCGTATTTATCGAGGCACATGAGGAGAGTTCATCATAATTACGGGAGAATGTTTAACTGTTGGTGCGGGAAAAAGTTCCGAACGCCGTTATATTTACGCGTGCATAAAAAACGGCAGCACAGTGGCAATAATAAAGCTACAGATATTAACAAATTTCAATGCGACTATTGCCAGAAAGTCTTCAAAACCAAAAGTATTTTATTAAGACATATAAAAACTATTCATTATGATTACGATAATGTATTTGAATGTATGTGTGGGAAAAAGTTCCGAACTCCGATACACTTAAGTGACCATAAAAGTCGGCACTGTCGGCAGCAGGATGGCAACATTAAAGATGCAAATAACGGCAAGTTCCAATGTGACTATTGCCACAAATGTTTCACAGCCAAACATGTTCTAGCATTACATATACAAAGTATTCATTATGATTATGACAAAGTGTTTGAATGTTGGTGCGGGAAAAACTACCGTACACCGATACACTTAGGTGTTCATATGAAACGGCAGCATAAAGGCAAAATTAAAAATGCATAA
- Protein Sequence
- MDSSVHLESSCDTLSIIIPGAQRKPTQTMNEEIKEETTVKFKNKEELPCRDYMPVIIFQYPYEPLDPSKFVNYYDGEDSLFELKEEFPEDECPQSDCNMNSKIVSDNTNSLTLIHKQIIKIETTEEELSLNLKEENEDKPYKFNIKMEIIEEQDILVNTEGTSIHYDVLVTPQEVHCKLCGRIFKNSFNLLKHNQEHIKVKIKIPGVNAMNELHQCQYCDKHFDNHDNMLIHISIVHNKKTHRCELCGIQFKSASNLKRHIVILHKCNISSKQVTRNSVKCKYCNEYFEHGYTLYKHMELCRTGKGDEGTKMFKCDSCDCVSTSKRTLKMHIKRTHYEYGGTFACWCGEQFRTPIHLSEHKSSRHGTKRKNKEDGVFKCICCEAVFNEKPYLSRHMRRVHHNYGRMFNCWCGKKFRTPLYLRVHKKRQHSGNNKATDINKFQCDYCQKVFKTKSILLRHIKTIHYDYDNVFECMCGKKFRTPIHLSDHKSRHCRQQDGNIKDANNGKFQCDYCHKCFTAKHVLALHIQSIHYDYDKVFECWCGKNYRTPIHLGVHMKRQHKGKIKNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -